Merge pull request #41929 from smaret/gildas

gildas: init at 201806_a

pkgs/applications/science/astronomy/gildas/clang.patch

@@ -0,0 +1,22 @@
+diff -ruN gildas-src-jun18a/admin/define-system.sh gildas-src-jun18a.clang/admin/define-system.sh
+--- gildas-src-jun18a/admin/define-system.sh	2018-03-12 11:07:57.000000000 +0100
++++ gildas-src-jun18a.clang/admin/define-system.sh	2018-06-12 14:56:14.000000000 +0200
+@@ -218,13 +218,13 @@
+         	else
+         	    GAG_MACHINE=pc
+         	fi
+-                if which gcc > /dev/null 2>&1; then
+-                    DEFAULT_CCOMPILER=gcc
++                if which clang > /dev/null 2>&1; then
++                    DEFAULT_CCOMPILER=clang
+                 fi
+-                if which g++ > /dev/null 2>&1; then
+-                    DEFAULT_CXXCOMPILER=g++
+-                elif which clang++ > /dev/null 2>&1; then
++                if which clang++ > /dev/null 2>&1; then
+                     DEFAULT_CXXCOMPILER=clang++
++                elif which g++ > /dev/null 2>&1; then
++                    DEFAULT_CXXCOMPILER=g++
+                 fi
+         	if which ifort > /dev/null 2>&1; then
+         	    DEFAULT_FCOMPILER=ifort

pkgs/applications/science/astronomy/gildas/default.nix

@@ -0,0 +1,68 @@
+{ stdenv, fetchurl, gtk2-x11 , pkgconfig , python27 , gfortran , lesstif
+, cfitsio , getopt , perl , groff , which
+}:
+
+let
+  python27Env = python27.withPackages(ps: with ps; [ numpy ]);
+in
+
+stdenv.mkDerivation rec {
+  srcVersion = "jun18a";
+  version = "20180601_a";
+  name = "gildas-${version}";
+
+  src = fetchurl {
+    url = "http://www.iram.fr/~gildas/dist/gildas-src-${srcVersion}.tar.gz";
+    sha256 = "0k4x0g69fphb1759cwcw6bbs8imwmq0qwj6zqixxk60skk4n4jvb";
+  };
+
+  enableParallelBuilding = true;
+
+  nativeBuildInputs = [ pkgconfig groff perl getopt gfortran which ];
+
+  buildInputs = [ gtk2-x11 lesstif cfitsio python27Env ];
+
+  patches = [ ./wrapper.patch ./return-error-code.patch ./clang.patch ];
+
+  configurePhase=''
+    substituteInPlace admin/wrapper.sh --replace '%%OUT%%' $out
+    substituteInPlace admin/wrapper.sh --replace '%%PYTHONHOME%%' ${python27Env}
+    source admin/gildas-env.sh -c gfortran -o openmp
+    echo "gag_doc:        $out/share/doc/" >> kernel/etc/gag.dico.lcl
+  '';
+
+  buildPhase=''
+    make depend
+    make
+  '';
+
+  postInstall=''
+    mkdir -p $out/bin
+    cp -a ../gildas-exe-${srcVersion}/* $out
+    mv $out/$GAG_EXEC_SYSTEM $out/libexec
+    cp admin/wrapper.sh $out/bin/gildas-wrapper.sh
+    chmod 755 $out/bin/gildas-wrapper.sh
+    for i in $out/libexec/bin/* ; do
+      ln -s $out/bin/gildas-wrapper.sh $out/bin/$(basename "$i")
+    done
+  '';
+
+  meta = {
+    description = "Radioastronomy data analysis software";
+    longDescription = ''
+      GILDAS is a collection of state-of-the-art software
+      oriented toward (sub-)millimeter radioastronomical
+      applications (either single-dish or interferometer).
+      It is daily used to reduce all data acquired with the
+      IRAM 30M telescope and Plateau de Bure Interferometer
+      PDBI (except VLBI observations). GILDAS is easily
+      extensible. GILDAS is written in Fortran-90, with a
+      few parts in C/C++ (mainly keyboard interaction,
+      plotting, widgets).'';
+    homepage = http://www.iram.fr/IRAMFR/GILDAS/gildas.html;
+    license = stdenv.lib.licenses.free;
+    maintainers = [ stdenv.lib.maintainers.bzizou stdenv.lib.maintainers.smaret ];
+    platforms = stdenv.lib.platforms.all;
+  };
+
+}

pkgs/applications/science/astronomy/gildas/return-error-code.patch

@@ -0,0 +1,13 @@
+diff --new-file -r -u gildas-src-dec17a.orig/admin/gildas-env.sh gildas-src-dec17a/admin/gildas-env.sh
+--- gildas-src-dec17a.orig/admin/gildas-env.sh	2017-10-24 11:39:18.000000000 +0200
++++ gildas-src-dec17a/admin/gildas-env.sh	2017-12-01 11:17:32.051953670 +0100
+@@ -1010,6 +1010,9 @@
+     gagenv_message "$gagenv_errors error(s) and $gagenv_warnings warning(s) detected"
+     if [ $gagenv_errors -ne 0 ]; then
+         gagenv_message "GILDAS will not compile"
++	gagenv_clean
++        echo
++        \return 1
+     elif [ $gagenv_warnings -ne 0 ]; then
+         gagenv_message "GILDAS will compile with some optional features disabled"
+     else

pkgs/applications/science/astronomy/gildas/wrapper.patch

@@ -0,0 +1,19 @@
+diff --new-file -r -u gildas-src-feb17d.orig/admin/wrapper.sh gildas-src-feb17d/admin/wrapper.sh
+--- gildas-src-feb17d.orig/admin/wrapper.sh	1970-01-01 01:00:00.000000000 +0100
++++ gildas-src-feb17d/admin/wrapper.sh	2017-05-18 21:00:01.660778782 +0200
+@@ -0,0 +1,15 @@
++#!/bin/sh -e
++
++export GAG_ROOT_DIR="%%OUT%%"
++export GAG_PATH="${GAG_ROOT_DIR}/etc"
++export GAG_EXEC_SYSTEM="libexec"
++export PYTHONHOME="%%PYTHONHOME%%"
++if [ -z "\$PYTHONPATH" ]; then
++  PYTHONPATH="${GAG_ROOT_DIR}/${GAG_EXEC_SYSTEM}/python"
++else
++  PYTHONPATH="${GAG_ROOT_DIR}/${GAG_EXEC_SYSTEM}/python:${PYTHONPATH}"
++fi
++export PYTHONPATH
++export LD_LIBRARY_PATH=${GAG_ROOT_DIR}/${GAG_EXEC_SYSTEM}/lib/
++me=`basename $0`
++exec ${GAG_ROOT_DIR}/${GAG_EXEC_SYSTEM}/bin/${me} ${*}

pkgs/top-level/all-packages.nix

@@ -20727,6 +20727,8 @@ with pkgs;
 
   fityk = callPackage ../applications/science/misc/fityk { };
 
+  gildas = callPackage ../applications/science/astronomy/gildas { };
+
   gplates = callPackage ../applications/science/misc/gplates {
     boost = boost160;
     cgal = cgal.override { boost = boost160; };