From a6520f6136e424982376ebd38ce5cb94e70efc23 Mon Sep 17 00:00:00 2001
From: Peter Hoeg <peter@hoeg.com>
Date: Mon, 24 Dec 2018 13:20:37 +0800
Subject: [PATCH 01/39] uchiwa: 1.3.1 -> 1.5.0

---
 pkgs/servers/monitoring/uchiwa/bower-packages.nix | 4 ++--
 pkgs/servers/monitoring/uchiwa/src.nix            | 4 ++--
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkgs/servers/monitoring/uchiwa/bower-packages.nix b/pkgs/servers/monitoring/uchiwa/bower-packages.nix
index a8180c5de3dc..40789fa34f8d 100644
--- a/pkgs/servers/monitoring/uchiwa/bower-packages.nix
+++ b/pkgs/servers/monitoring/uchiwa/bower-packages.nix
@@ -1,7 +1,7 @@
 # Generated by bower2nix v3.2.0 (https://github.com/rvl/bower2nix)
 { fetchbower, buildEnv }:
 buildEnv { name = "bower-env"; ignoreCollisions = true; paths = [
-  (fetchbower "uchiwa-web" "1.3.1" "1.3.1" "0vhfwm4z3d4v4p2vfq1vvk4fifxm43f8lyccwpgmw153z4gj14gk")
+  (fetchbower "uchiwa-web" "1.5.0" "1.5.0" "0z7g4nb7cm5w5l8w1856sbib15sx022mqpap9d49s6ppnn53vcs1")
   (fetchbower "angular" "1.6.10" "~1.6.3" "0ag8xddsgxx5yka4wjq4ala4y6z3x2g1vc3x7a1n291fzz26p7ws")
   (fetchbower "angular-bootstrap" "2.2.0" "~2.2.0" "11r2nlwp6xrim2y6lnrr8v064mx3bmlxchqpg1i803v9zxz3q53d")
   (fetchbower "angular-cookies" "1.6.10" "~1.6.3" "0bjgmz5jnw06dfxhq9sajj62fk0b3v4j9p7nb45x8bl8rzkf25pn")
@@ -19,7 +19,7 @@ buildEnv { name = "bower-env"; ignoreCollisions = true; paths = [
   (fetchbower "highlightjs" "9.1.0" "~9.1.0" "0ld1da3h416a5j8v3v50rrpm4xwvvq8k8y2vwncvaqm9cqddz4s3")
   (fetchbower "moment" "2.16.0" "~2.16.0" "1mji892i60f2aw3vhl6878acrcgh0ycn3r4af0ivnjf8az2b9n71")
   (fetchbower "moment-picker" "0.9.11" "~0.9.7" "0p2g6rp2kcixydrga9lfihg4bxb598rvpi8n8l59mp549diy7vsb")
-  (fetchbower "ua-parser-js" "0.7.18" "~0.7.12" "0qi7y5yrsdh2brpmwx0xs53bzr4pja5x1k2875x6zh259ag3zdkn")
+  (fetchbower "ua-parser-js" "0.7.19" "~0.7.12" "0s1yaspccz234hm772hlybjsi0kndzwpjx5lzy3y1s4wfk248ks4")
   (fetchbower "jsoneditor" "5.5.11" "~5.5.10" "1gfsf8jqnd3hb3r9s9246mg40iqxk2ix8k4bjnrsbfmg6cd3xw6x")
   (fetchbower "jquery" "3.3.1" ">= 1.9.0" "1l891s3vgnpi1g8ksplid9jvrvnnv6lci8vraix4ssy50i264rkx")
 ]; }
diff --git a/pkgs/servers/monitoring/uchiwa/src.nix b/pkgs/servers/monitoring/uchiwa/src.nix
index 51c343d01da8..cf5376318b45 100644
--- a/pkgs/servers/monitoring/uchiwa/src.nix
+++ b/pkgs/servers/monitoring/uchiwa/src.nix
@@ -1,4 +1,4 @@
 {
-    version = "1.3.1-1";
-    sha256  = "1cjb7k19iy79hh9gbjx67yrz44y92s516d0h403bf6w272g23yzi";
+    version = "1.5.0-1";
+    sha256  = "05idwiv47zav46wi1hfly6rylpw8qryr12xlz47ic04ggdlga13b";
 }

From 60be98f697300ef673b2dc8a612bdb189175837a Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Mon, 24 Dec 2018 06:43:47 -0800
Subject: [PATCH 02/39] skrooge: 2.16.2 -> 2.17.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/skrooge/versions
---
 pkgs/applications/office/skrooge/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/office/skrooge/default.nix b/pkgs/applications/office/skrooge/default.nix
index 070ef4845d83..5168b2fef533 100644
--- a/pkgs/applications/office/skrooge/default.nix
+++ b/pkgs/applications/office/skrooge/default.nix
@@ -7,11 +7,11 @@
 
 mkDerivation rec {
   name = "skrooge-${version}";
-  version = "2.16.2";
+  version = "2.17.0";
 
   src = fetchurl {
     url = "http://download.kde.org/stable/skrooge/${name}.tar.xz";
-    sha256 = "0idvqbra8a71jb5kq9y5v377l7k3shf4z7w71apc3rjvb4l0jkhj";
+    sha256 = "0v83bcabchsz5fs0iv5i75ps01sga48hq4cx29dajcq3kf9xgwhr";
   };
 
   nativeBuildInputs = [

From 1a40a8e00001b78603c8eb7fa82d83f17f9171f6 Mon Sep 17 00:00:00 2001
From: obadz <obadz-git@obadz.com>
Date: Mon, 24 Dec 2018 23:31:40 +0000
Subject: [PATCH 03/39] gtk-sharp: wrap output executables

Fixes the below build error in gnome-sharp which appeared after #52712

/nix/store/wsqld4bccm0bwjnn1gj9cr32qscz4qk7-gtk-sharp-2.12.10/bin/gapi2-fixup --api=art-api.xml --metadata=./Art.metadata  --symbols=./art-symbols.xml
rm -f generated/* &&    \
/nix/store/wsqld4bccm0bwjnn1gj9cr32qscz4qk7-gtk-sharp-2.12.10/bin/gapi2-codegen --generate art-api.xml \
-I:/nix/store/wsqld4bccm0bwjnn1gj9cr32qscz4qk7-gtk-sharp-2.12.10/lib/pkgconfig/../../share/gapi-2.0/pango-api.xml -I:/nix/store/wsqld4bccm0bwjnn1gj9cr32qscz4qk7-gtk-sharp-2.12.10/lib/pkgconfig/../../share/gapi-2.0/atk-api.xml -I:/nix/store/wsqld4bccm0bwjnn1gj9cr32qscz4qk7-gtk-sharp-2.12.10/lib/pkgconfig/../../share/gapi-2.0/gdk-api.xml -I:/nix/store/wsqld4bccm0bwjnn1gj9cr32qscz4qk7-gtk-sharp-2.12.10/lib/pkgconfig/../../share/gapi-2.0/gtk-api.xml -I:/nix/store/wsqld4bccm0bwjnn1gj9cr32qscz4qk7-gtk-sharp-2.12.10/lib/pkgconfig/../../share/gapi-2.0/glib-api.xml      \
--outdir=generated --customdir=. --assembly-name=art-sharp      \
--gluelib-name=artsharpglue-2 --glue-filename=glue/generated.c          \
--glue-includes=                                                \
&& touch generated-stamp

Unhandled Exception:
System.MissingMethodException: Method 'string.Split' not found.
  at GtkSharp.Generation.SimpleGen..ctor (System.String ctype, System.String type, System.String default_value) [0x00000] in <d117698e7b8a4f9b867143c99aa161ba>:0
  at GtkSharp.Generation.SymbolTable..ctor () [0x00011] in <d117698e7b8a4f9b867143c99aa161ba>:0
  at GtkSharp.Generation.SymbolTable.get_Table () [0x0000a] in <d117698e7b8a4f9b867143c99aa161ba>:0
  at GtkSharp.Generation.CodeGenerator.Main (System.String[] args) [0x0003e] in <d117698e7b8a4f9b867143c99aa161ba>:0
[ERROR] FATAL UNHANDLED EXCEPTION: System.MissingMethodException: Method 'string.Split' not found.
  at GtkSharp.Generation.SimpleGen..ctor (System.String ctype, System.String type, System.String default_value) [0x00000] in <d117698e7b8a4f9b867143c99aa161ba>:0
---
 pkgs/development/libraries/gtk-sharp/2.0.nix | 10 ++++++++++
 1 file changed, 10 insertions(+)

diff --git a/pkgs/development/libraries/gtk-sharp/2.0.nix b/pkgs/development/libraries/gtk-sharp/2.0.nix
index c037db97c044..8b360e54ef17 100644
--- a/pkgs/development/libraries/gtk-sharp/2.0.nix
+++ b/pkgs/development/libraries/gtk-sharp/2.0.nix
@@ -32,7 +32,17 @@ stdenv.mkDerivation {
     done
   '';
 
+  postInstall = ''
+    pushd $out/bin
+    for f in gapi2-*
+    do
+      substituteInPlace $f --replace mono ${mono}/bin/mono
+    done
+    popd
+  '';
+
   nativeBuildInputs = [ pkgconfig ];
+
   buildInputs = [
     mono glib pango gtk2 GConf libglade libgnomecanvas
     libgtkhtml libgnomeui libgnomeprint libgnomeprintui gtkhtml libxml2

From cd46319bdc789697f48857c33df282aa4982c7c2 Mon Sep 17 00:00:00 2001
From: obadz <obadz-git@obadz.com>
Date: Mon, 24 Dec 2018 23:57:04 +0000
Subject: [PATCH 04/39] gtk-sharp: 2.12.10 -> 2.12.45

---
 pkgs/development/libraries/gtk-sharp/2.0.nix | 38 +++++++++++---------
 1 file changed, 22 insertions(+), 16 deletions(-)

diff --git a/pkgs/development/libraries/gtk-sharp/2.0.nix b/pkgs/development/libraries/gtk-sharp/2.0.nix
index 8b360e54ef17..659dc14800e1 100644
--- a/pkgs/development/libraries/gtk-sharp/2.0.nix
+++ b/pkgs/development/libraries/gtk-sharp/2.0.nix
@@ -1,4 +1,8 @@
-{ stdenv, fetchurl, pkgconfig, mono
+{ stdenv
+, lib
+, fetchFromGitHub
+, pkgconfig
+, mono
 , glib
 , pango
 , gtk2
@@ -12,26 +16,24 @@
 , libgnomeprintui ? null
 , libxml2
 , monoDLLFixer
+, autoconf
+, automake
+, libtool
+, which
 }:
 
-stdenv.mkDerivation {
-  name = "gtk-sharp-2.12.10";
+stdenv.mkDerivation rec {
+  name = "gtk-sharp-${version}";
+  version = "2.12.45";
 
   builder = ./builder.sh;
-  src = fetchurl {
-    url = mirror://gnome/sources/gtk-sharp/2.12/gtk-sharp-2.12.10.tar.gz;
-    sha256 = "1y55vc2cp4lggmbil2lb28d0gn71iq6wfyja1l9mya5xll8svzwc";
+  src = fetchFromGitHub {
+    owner = "mono";
+    repo = "gtk-sharp";
+    rev = version;
+    sha256 = "1vy6yfwkfv6bb45bzf4g6dayiqkvqqvlr02rsnhd10793hlpqlgg";
   };
 
-  # patches = [ ./dllmap-glue.patch ];
-
-  # patch bad usage of glib, which wasn't tolerated anymore
-  prePatch = ''
-    for f in glib/glue/{thread,list,slist}.c; do
-      sed -i 's,#include <glib/.*\.h>,#include <glib.h>,g' "$f"
-    done
-  '';
-
   postInstall = ''
     pushd $out/bin
     for f in gapi2-*
@@ -41,13 +43,17 @@ stdenv.mkDerivation {
     popd
   '';
 
-  nativeBuildInputs = [ pkgconfig ];
+  nativeBuildInputs = [ pkgconfig autoconf automake libtool which ];
 
   buildInputs = [
     mono glib pango gtk2 GConf libglade libgnomecanvas
     libgtkhtml libgnomeui libgnomeprint libgnomeprintui gtkhtml libxml2
   ];
 
+  preConfigure = ''
+    ./bootstrap-${lib.versions.majorMinor version}
+  '';
+
   dontStrip = true;
 
   inherit monoDLLFixer;

From f7cc6f04b23db7a1eb405ea4fbe2ac74e745e5b3 Mon Sep 17 00:00:00 2001
From: obadz <obadz-git@obadz.com>
Date: Mon, 24 Dec 2018 23:56:49 +0000
Subject: [PATCH 05/39] gnome-sharp: 2.24.1 -> 2.24.4

---
 .../libraries/gnome-sharp/Makefile.in.patch   | 11 ------
 .../libraries/gnome-sharp/default.nix         | 36 ++++++++++++++-----
 2 files changed, 27 insertions(+), 20 deletions(-)
 delete mode 100644 pkgs/development/libraries/gnome-sharp/Makefile.in.patch

diff --git a/pkgs/development/libraries/gnome-sharp/Makefile.in.patch b/pkgs/development/libraries/gnome-sharp/Makefile.in.patch
deleted file mode 100644
index 46b644f2471a..000000000000
--- a/pkgs/development/libraries/gnome-sharp/Makefile.in.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- a/sample/gnomevfs/Makefile.in	2009-03-03 16:09:52.000000000 +0000
-+++ b/sample/gnomevfs/Makefile.in	2014-10-14 13:35:51.020427244 +0100
-@@ -218,7 +218,7 @@
- 
- @ENABLE_GNOMEVFS_FALSE@EXTRA_TARGETS = 
- @ENABLE_GNOMEVFS_TRUE@@ENABLE_MONOGETOPTIONS_FALSE@EXTRA_TARGETS = 
--@ENABLE_GNOMEVFS_TRUE@@ENABLE_MONOGETOPTIONS_TRUE@EXTRA_TARGETS = TestXfer.exe
-+@ENABLE_GNOMEVFS_TRUE@@ENABLE_MONOGETOPTIONS_TRUE@EXTRA_TARGETS =
- assemblies = ../../gnomevfs/gnome-vfs-sharp.dll
- references = $(GTKSHARP_LIBS) $(addprefix /r:, $(assemblies))
- noinst_SCRIPTS = $(TARGETS) $(EXTRA_TARGETS)
diff --git a/pkgs/development/libraries/gnome-sharp/default.nix b/pkgs/development/libraries/gnome-sharp/default.nix
index d80144b3d719..db93bdf27af3 100644
--- a/pkgs/development/libraries/gnome-sharp/default.nix
+++ b/pkgs/development/libraries/gnome-sharp/default.nix
@@ -1,17 +1,35 @@
-{stdenv, fetchurl, pkgconfig, gtk2, mono, gtk-sharp-2_0, gnome2}:
+{ stdenv
+, lib
+, fetchFromGitHub
+, pkgconfig
+, gtk2
+, mono
+, gtk-sharp-2_0
+, gnome2
+, autoconf
+, automake
+, libtool
+, which
+}:
 
-stdenv.mkDerivation {
-  name = "gnome-sharp-2.24.1";
-  src = fetchurl {
-    url = http://ftp.gnome.org/pub/gnome/sources/gnome-sharp/2.24/gnome-sharp-2.24.1.tar.gz;
-    sha256 = "0cfvs7hw67fp0wimskqd0gdfx323gv6hi0c5pf59krnmhdrl6z8p";
+stdenv.mkDerivation rec {
+  name = "gnome-sharp-${version}";
+  version = "2.24.4";
+
+  src = fetchFromGitHub {
+    owner = "mono";
+    repo = "gnome-sharp";
+    rev = "${version}";
+    sha256 = "15jsm6n0sih0nf3w8vmvik97q7l3imz4vkdzmp9k7bssiz4glj1z";
   };
 
-  nativeBuildInputs = [ pkgconfig ];
+  nativeBuildInputs = [ pkgconfig autoconf automake libtool which ];
   buildInputs = [ gtk2 mono gtk-sharp-2_0 ]
-  ++ (with gnome2; [ libart_lgpl gnome_vfs libgnome libgnomecanvas libgnomeui]);
+  ++ (with gnome2; [ libart_lgpl gnome_vfs libgnome libgnomecanvas libgnomeui ]);
 
-  patches = [ ./Makefile.in.patch ];
+  preConfigure = ''
+    ./bootstrap-${lib.versions.majorMinor version}
+  '';
 
   dontStrip = true;
 

From 4ff22f224f9c5d4fdde095461e7650d76ee8315e Mon Sep 17 00:00:00 2001
From: obadz <obadz-git@obadz.com>
Date: Mon, 24 Dec 2018 23:57:12 +0000
Subject: [PATCH 06/39] mono: move a hyena and pdfmod from mono4 to mono5

Closes #52484
---
 pkgs/top-level/all-packages.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index c27289de138d..82a5fa8bc007 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -4785,7 +4785,7 @@ in
 
   fmodex = callPackage ../games/zandronum/fmod.nix { };
 
-  pdfmod = callPackage ../applications/misc/pdfmod { mono = mono4; };
+  pdfmod = callPackage ../applications/misc/pdfmod { };
 
   pdf-quench = callPackage ../applications/misc/pdf-quench { };
 
@@ -10298,7 +10298,7 @@ in
 
   hydraAntLogger = callPackage ../development/libraries/java/hydra-ant-logger { };
 
-  hyena = callPackage ../development/libraries/hyena { mono = mono4; };
+  hyena = callPackage ../development/libraries/hyena { };
 
   hyperscan = callPackage ../development/libraries/hyperscan { };
 

From 741e00fd1051bf119c13704abaadc46f046baabf Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Tue, 25 Dec 2018 10:05:38 +0100
Subject: [PATCH 07/39] python36: 3.6.7 -> 3.6.8

---
 pkgs/development/interpreters/python/cpython/3.6/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/interpreters/python/cpython/3.6/default.nix b/pkgs/development/interpreters/python/cpython/3.6/default.nix
index 4c9d0c2a8962..15a62b42959c 100644
--- a/pkgs/development/interpreters/python/cpython/3.6/default.nix
+++ b/pkgs/development/interpreters/python/cpython/3.6/default.nix
@@ -26,7 +26,7 @@ with stdenv.lib;
 
 let
   majorVersion = "3.6";
-  minorVersion = "7";
+  minorVersion = "8";
   minorVersionSuffix = "";
   version = "${majorVersion}.${minorVersion}${minorVersionSuffix}";
   libPrefix = "python${majorVersion}";
@@ -51,7 +51,7 @@ in stdenv.mkDerivation {
 
   src = fetchurl {
     url = "https://www.python.org/ftp/python/${majorVersion}.${minorVersion}/Python-${version}.tar.xz";
-    sha256 = "0zgp8nvz3rkiz5cxd42vgpah4rvw3kmg9qz9lfq36rfnm40i9zc1";
+    sha256 = "14qi6n5gpcjnwy165wi9hkfcmbadc95ny6bxxldknxwmx50n4i1m";
   };
 
   NIX_LDFLAGS = optionalString stdenv.isLinux "-lgcc_s";

From 552d8a70d4c47a6e52a8e0b26e3a2e33d5b94ca6 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Tue, 25 Dec 2018 10:05:49 +0100
Subject: [PATCH 08/39] python37: 3.7.1 -> 3.7.2

---
 pkgs/development/interpreters/python/cpython/3.7/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/interpreters/python/cpython/3.7/default.nix b/pkgs/development/interpreters/python/cpython/3.7/default.nix
index 093d8599690c..800534e17d5a 100644
--- a/pkgs/development/interpreters/python/cpython/3.7/default.nix
+++ b/pkgs/development/interpreters/python/cpython/3.7/default.nix
@@ -26,7 +26,7 @@ with stdenv.lib;
 
 let
   majorVersion = "3.7";
-  minorVersion = "1";
+  minorVersion = "2";
   minorVersionSuffix = "";
   version = "${majorVersion}.${minorVersion}${minorVersionSuffix}";
   libPrefix = "python${majorVersion}";
@@ -48,7 +48,7 @@ in stdenv.mkDerivation {
 
   src = fetchurl {
     url = "https://www.python.org/ftp/python/${majorVersion}.${minorVersion}/Python-${version}.tar.xz";
-    sha256 = "0v9x4h22rh5cwpsq1mwpdi3c9lc9820lzp2nmn9g20llij72nzps";
+    sha256 = "1fzi9d2gibh0wzwidyckzbywsxcsbckgsl05ryxlifxia77fhgyq";
   };
 
   NIX_LDFLAGS = optionalString stdenv.isLinux "-lgcc_s";

From b51aaaa36c4f806ce052778a1b494dcc058af8ac Mon Sep 17 00:00:00 2001
From: Dmitry Kalinkin <dmitry.kalinkin@gmail.com>
Date: Wed, 5 Dec 2018 21:24:28 -0500
Subject: [PATCH 09/39] pythonPackages.lz4: remove in favor of
 pythonPackages.python-lz4

lz4 packages the same package as python-lz4, but an outdated version
---
 .../python-modules/lz4/default.nix            | 29 -------------------
 pkgs/top-level/python-packages.nix            |  3 +-
 2 files changed, 1 insertion(+), 31 deletions(-)
 delete mode 100644 pkgs/development/python-modules/lz4/default.nix

diff --git a/pkgs/development/python-modules/lz4/default.nix b/pkgs/development/python-modules/lz4/default.nix
deleted file mode 100644
index a9a7783fe777..000000000000
--- a/pkgs/development/python-modules/lz4/default.nix
+++ /dev/null
@@ -1,29 +0,0 @@
-{ stdenv
-, buildPythonPackage
-, fetchPypi
-, pytestrunner
-, pytest
-, psutil
-, pkgconfig
-, setuptools_scm
-}:
-
-buildPythonPackage rec {
-  pname = "lz4";
-  version = "2.1.2";
-
-  src = fetchPypi {
-    inherit pname version;
-    sha256 = "ec265f7c3fc3df706e9579bde632ceeef9278858d7ae87c376a2954d11e9ea39";
-  };
-
-  buildInputs = [ setuptools_scm pytestrunner pkgconfig ];
-  checkInputs = [ pytest psutil ];
-
-  meta = with stdenv.lib; {
-    description = "Compression library";
-    homepage = https://github.com/python-lz4/python-lz4;
-    license = licenses.bsd3;
-  };
-
-}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index b8fbcaa194c1..a64ce4e869c1 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -648,6 +648,7 @@ in {
   python-hosts = callPackage ../development/python-modules/python-hosts { };
 
   python-lz4 = callPackage ../development/python-modules/python-lz4 { };
+  lz4 = self.python-lz4; # alias 2018-12-05
 
   python-ldap-test = callPackage ../development/python-modules/python-ldap-test { };
 
@@ -3268,8 +3269,6 @@ in {
 
   ldappool = callPackage ../development/python-modules/ldappool { };
 
-  lz4 = callPackage ../development/python-modules/lz4 { };
-
   retrying = callPackage ../development/python-modules/retrying { };
 
   fasteners = callPackage ../development/python-modules/fasteners { };

From 6ef6d4339a499f30cb83ea768e8cbb3fb662469b Mon Sep 17 00:00:00 2001
From: Dmitry Kalinkin <dmitry.kalinkin@gmail.com>
Date: Wed, 5 Dec 2018 21:25:22 -0500
Subject: [PATCH 10/39] pythonPackages.python-lz4: fix license

---
 pkgs/development/python-modules/python-lz4/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/python-modules/python-lz4/default.nix b/pkgs/development/python-modules/python-lz4/default.nix
index a0fe6666d849..df95ce50a80c 100644
--- a/pkgs/development/python-modules/python-lz4/default.nix
+++ b/pkgs/development/python-modules/python-lz4/default.nix
@@ -34,7 +34,7 @@ buildPythonPackage rec {
   meta = {
      description = "LZ4 Bindings for Python";
      homepage = https://github.com/python-lz4/python-lz4;
-     license = lib.licenses.bsd0;
+     license = lib.licenses.bsd3;
      maintainers = with lib.maintainers; [ costrouc ];
   };
 }

From fdc9826c195ec0f7396a67b2979005ab9298bcb0 Mon Sep 17 00:00:00 2001
From: Dmitry Kalinkin <dmitry.kalinkin@gmail.com>
Date: Wed, 5 Dec 2018 23:20:12 -0500
Subject: [PATCH 11/39] buildbot: replace lz4 alias with proper name

lz4 used to package the same package as python-lz4, then lz4 was
removed and became an alias to python-lz4
---
 pkgs/development/python-modules/buildbot/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/buildbot/default.nix b/pkgs/development/python-modules/buildbot/default.nix
index c8bc14d3dc11..011cd879b1f3 100644
--- a/pkgs/development/python-modules/buildbot/default.nix
+++ b/pkgs/development/python-modules/buildbot/default.nix
@@ -1,7 +1,7 @@
 { stdenv, lib, buildPythonPackage, fetchPypi, makeWrapper, isPy3k,
   python, twisted, jinja2, zope_interface, future, sqlalchemy,
   sqlalchemy_migrate, dateutil, txaio, autobahn, pyjwt, treq, txrequests,
-  txgithub, pyjade, boto3, moto, mock, lz4, setuptoolsTrial, isort, pylint,
+  txgithub, pyjade, boto3, moto, mock, python-lz4, setuptoolsTrial, isort, pylint,
   flake8, buildbot-worker, buildbot-pkg, glibcLocales }:
 
 let
@@ -55,7 +55,7 @@ let
       boto3
       moto
       mock
-      lz4
+      python-lz4
       setuptoolsTrial
       isort
       pylint

From be94ca4ada66eef0850e3484b0c02db3607a7632 Mon Sep 17 00:00:00 2001
From: Dmitry Kalinkin <dmitry.kalinkin@gmail.com>
Date: Wed, 5 Dec 2018 23:20:42 -0500
Subject: [PATCH 12/39] pythonPackages.python-lz4: 2.1.0 -> 2.1.2

---
 pkgs/development/python-modules/python-lz4/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/python-lz4/default.nix b/pkgs/development/python-modules/python-lz4/default.nix
index df95ce50a80c..544d8f6254d6 100644
--- a/pkgs/development/python-modules/python-lz4/default.nix
+++ b/pkgs/development/python-modules/python-lz4/default.nix
@@ -12,14 +12,14 @@
 
 buildPythonPackage rec {
   pname = "python-lz4";
-  version = "2.1.0";
+  version = "2.1.2";
 
   # get full repository inorder to run tests
   src = fetchFromGitHub {
     owner = pname;
     repo = pname;
     rev = "v${version}";
-    sha256 = "1vjfplj37jcw1mf8l810dv76dx0raia3ylgyfy7sfsb3g17brjq6";
+    sha256 = "1kzzdfkrq9nnlh0wssa6ccncvv0sk4wmhivhgyndjxz6d6przl5d";
   };
 
   buildInputs = [ setuptools_scm pkgconfig pytestrunner ];

From c217d67be3f0919bf471143d8b7c37a2ede970bc Mon Sep 17 00:00:00 2001
From: Dmitry Kalinkin <dmitry.kalinkin@gmail.com>
Date: Thu, 6 Dec 2018 02:10:30 -0500
Subject: [PATCH 13/39] mozlz4a: replace lz4 alias with proper name

lz4 used to package the same package as python-lz4, then lz4 was
removed and became an alias to python-lz4
---
 pkgs/tools/compression/mozlz4a/default.nix | 5 +++--
 pkgs/top-level/all-packages.nix            | 4 +---
 2 files changed, 4 insertions(+), 5 deletions(-)

diff --git a/pkgs/tools/compression/mozlz4a/default.nix b/pkgs/tools/compression/mozlz4a/default.nix
index abd094836664..ce2aa9520d67 100644
--- a/pkgs/tools/compression/mozlz4a/default.nix
+++ b/pkgs/tools/compression/mozlz4a/default.nix
@@ -1,4 +1,5 @@
-{stdenv, fetchurl, python3, pylz4}:
+{ stdenv, fetchurl, python3 }:
+
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
   pname = "mozlz4a";
@@ -21,7 +22,7 @@ stdenv.mkDerivation rec {
     chmod a+x "$out/bin/mozlz4a"
   '';
 
-  buildInputs = [ pylz4 python3 ];
+  buildInputs = [ python3 python3.pkgs.python-lz4 ];
 
   meta = {
     inherit version;
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 3650e3bcb852..962f2ed34556 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -1693,9 +1693,7 @@ in
 
   mongodb-tools = callPackage ../tools/misc/mongodb-tools { };
 
-  mozlz4a = callPackage ../tools/compression/mozlz4a {
-    pylz4 = python3Packages.lz4;
-  };
+  mozlz4a = callPackage ../tools/compression/mozlz4a { };
 
   msr-tools = callPackage ../os-specific/linux/msr-tools { };
 

From 40e0d00cd61188ebef625921d1bec71f0183e78a Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Tue, 25 Dec 2018 07:48:32 -0800
Subject: [PATCH 14/39] libqmatrixclient: 0.4.0 -> 0.4.1

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/libqmatrixclient/versions
---
 pkgs/development/libraries/libqmatrixclient/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/libqmatrixclient/default.nix b/pkgs/development/libraries/libqmatrixclient/default.nix
index 2f20150ad164..db9c29469353 100644
--- a/pkgs/development/libraries/libqmatrixclient/default.nix
+++ b/pkgs/development/libraries/libqmatrixclient/default.nix
@@ -3,13 +3,13 @@
 
 stdenv.mkDerivation rec {
   name = "libqmatrixclient-${version}";
-  version = "0.4.0";
+  version = "0.4.1";
 
   src = fetchFromGitHub {
     owner  = "QMatrixClient";
     repo   = "libqmatrixclient";
     rev    = "v${version}";
-    sha256 = "1llzqjagvp91kcg26q5c4qw9aaz7wna3rh6k06rc3baivrjqf3cn";
+    sha256 = "16hi2xqlb4afspqw31c5w63qp0j4gkd6sl7j637b8cac2yigbbns";
   };
 
   buildInputs = [ qtbase ];

From be96560327748a6f1b9fc7201df522449f3f765c Mon Sep 17 00:00:00 2001
From: Kai Wohlfahrt <kai@prodo.ai>
Date: Mon, 17 Dec 2018 14:15:13 +0000
Subject: [PATCH 15/39] pythonPackages.pytorch: 0.4.1 -> 1.0.0

`thd_distributed` is broken just like `distributed` is. `cpp_extensions`
is broken upstream now, it seems? In the future it can hopefully be
re-enabled.

Signed-off-by: Austin Seipp <aseipp@pobox.com>
---
 pkgs/development/python-modules/pytorch/default.nix | 9 +++++----
 1 file changed, 5 insertions(+), 4 deletions(-)

diff --git a/pkgs/development/python-modules/pytorch/default.nix b/pkgs/development/python-modules/pytorch/default.nix
index b0ae9ef0cf55..d0aa2e59ffca 100644
--- a/pkgs/development/python-modules/pytorch/default.nix
+++ b/pkgs/development/python-modules/pytorch/default.nix
@@ -1,6 +1,6 @@
 { buildPythonPackage, pythonOlder,
   cudaSupport ? false, cudatoolkit ? null, cudnn ? null,
-  fetchFromGitHub, lib, numpy, pyyaml, cffi, typing, cmake,
+  fetchFromGitHub, lib, numpy, pyyaml, cffi, typing, cmake, hypothesis,
   linkFarm, symlinkJoin,
   utillinux, which }:
 
@@ -25,7 +25,7 @@ let
     "LD_LIBRARY_PATH=${cudaStub}\${LD_LIBRARY_PATH:+:$LD_LIBRARY_PATH} ";
 
 in buildPythonPackage rec {
-  version = "0.4.1";
+  version = "1.0.0";
   pname = "pytorch";
 
   src = fetchFromGitHub {
@@ -33,7 +33,7 @@ in buildPythonPackage rec {
     repo   = "pytorch";
     rev    = "v${version}";
     fetchSubmodules = true;
-    sha256 = "1cr8h47jxgfar5bamyvlayvqymnb2qvp7rr0ka2d2d4rdldf9lrp";
+    sha256 = "076cpbig4sywn9vv674c0xdg832sdrd5pk1d0725pjkm436kpvlm";
   };
 
   preConfigure = lib.optionalString cudaSupport ''
@@ -71,8 +71,9 @@ in buildPythonPackage rec {
     pyyaml
   ] ++ lib.optional (pythonOlder "3.5") typing;
 
+  checkInputs = [ hypothesis ];
   checkPhase = ''
-    ${cudaStubEnv}python test/run_test.py --exclude dataloader sparse torch utils distributed
+    ${cudaStubEnv}python test/run_test.py --exclude dataloader sparse torch utils thd_distributed distributed cpp_extensions
   '';
 
   meta = {

From c6ecb3887f2adb423939a058ff141ae4a82d7315 Mon Sep 17 00:00:00 2001
From: Austin Seipp <aseipp@pobox.com>
Date: Mon, 24 Dec 2018 05:46:51 -0600
Subject: [PATCH 16/39] pythonPackages.pytorch: fix weirdly broken wheel
 version number

Otherwise, the wheel gets built with invalid metadata -- causing
'torch >= 1.0.0' to be unsatisfiable in other python packages, for
instance.

Signed-off-by: Austin Seipp <aseipp@pobox.com>
---
 pkgs/development/python-modules/pytorch/default.nix | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/pkgs/development/python-modules/pytorch/default.nix b/pkgs/development/python-modules/pytorch/default.nix
index d0aa2e59ffca..e65626e7787a 100644
--- a/pkgs/development/python-modules/pytorch/default.nix
+++ b/pkgs/development/python-modules/pytorch/default.nix
@@ -58,6 +58,12 @@ in buildPythonPackage rec {
     done
   '';
 
+  # Override the (weirdly) wrong version set by default. See
+  # https://github.com/NixOS/nixpkgs/pull/52437#issuecomment-449718038
+  # https://github.com/pytorch/pytorch/blob/v1.0.0/setup.py#L267
+  PYTORCH_BUILD_VERSION = version;
+  PYTORCH_BUILD_NUMBER = 0;
+
   buildInputs = [
      cmake
      numpy.blas

From 6fcebb6427de9e5eb105d2057614c8adce6ad17d Mon Sep 17 00:00:00 2001
From: Austin Seipp <aseipp@pobox.com>
Date: Mon, 24 Dec 2018 19:57:30 -0600
Subject: [PATCH 17/39] pythonPackages.pytorch: fix spurious test failures

This was fixed upstream already -- these tests ensure multi-GPU
functionality works, and thus requires multiple GPUs.

Signed-off-by: Austin Seipp <aseipp@pobox.com>
---
 pkgs/development/python-modules/pytorch/default.nix | 10 +++++++++-
 1 file changed, 9 insertions(+), 1 deletion(-)

diff --git a/pkgs/development/python-modules/pytorch/default.nix b/pkgs/development/python-modules/pytorch/default.nix
index e65626e7787a..7d80e756c77b 100644
--- a/pkgs/development/python-modules/pytorch/default.nix
+++ b/pkgs/development/python-modules/pytorch/default.nix
@@ -1,4 +1,4 @@
-{ buildPythonPackage, pythonOlder,
+{ fetchurl, buildPythonPackage, pythonOlder,
   cudaSupport ? false, cudatoolkit ? null, cudnn ? null,
   fetchFromGitHub, lib, numpy, pyyaml, cffi, typing, cmake, hypothesis,
   linkFarm, symlinkJoin,
@@ -36,6 +36,14 @@ in buildPythonPackage rec {
     sha256 = "076cpbig4sywn9vv674c0xdg832sdrd5pk1d0725pjkm436kpvlm";
   };
 
+  patches =
+    [ # Skips two tests that are only meant to run on multi GPUs
+      (fetchurl {
+        url = "https://github.com/pytorch/pytorch/commit/bfa666eb0deebac21b03486e26642fd70d66e478.patch";
+        sha256 = "1fgblcj02gjc0y62svwc5gnml879q3x2z7m69c9gax79dpr37s9i";
+      })
+    ];
+
   preConfigure = lib.optionalString cudaSupport ''
     export CC=${cudatoolkit.cc}/bin/gcc CXX=${cudatoolkit.cc}/bin/g++
   '' + lib.optionalString (cudaSupport && cudnn != null) ''

From 79d21285dd91222aa4cdbbda4e33f19e2e32aa83 Mon Sep 17 00:00:00 2001
From: Austin Seipp <aseipp@pobox.com>
Date: Mon, 24 Dec 2018 19:58:04 -0600
Subject: [PATCH 18/39] pythonPackages.pytorch: meta touch up, add myself as
 maintainer

Signed-off-by: Austin Seipp <aseipp@pobox.com>
---
 pkgs/development/python-modules/pytorch/default.nix | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/pkgs/development/python-modules/pytorch/default.nix b/pkgs/development/python-modules/pytorch/default.nix
index 7d80e756c77b..11fe0b5e6c46 100644
--- a/pkgs/development/python-modules/pytorch/default.nix
+++ b/pkgs/development/python-modules/pytorch/default.nix
@@ -91,10 +91,10 @@ in buildPythonPackage rec {
   '';
 
   meta = {
-    description = "Tensors and Dynamic neural networks in Python with strong GPU acceleration.";
-    homepage = https://pytorch.org/;
-    license = lib.licenses.bsd3;
-    platforms = lib.platforms.linux;
-    maintainers = with lib.maintainers; [ teh ];
+    description = "Open source, prototype-to-production deep learning platform";
+    homepage    = https://pytorch.org/;
+    license     = lib.licenses.bsd3;
+    platforms   = lib.platforms.linux;
+    maintainers = with lib.maintainers; [ teh thoughtpolice ];
   };
 }

From 60176e005dd466727bd9bde8fbeb01f39ddee37e Mon Sep 17 00:00:00 2001
From: Austin Seipp <aseipp@pobox.com>
Date: Mon, 24 Dec 2018 19:59:40 -0600
Subject: [PATCH 19/39] pythonPackages.pytorch: add libnuma dep on Linux

Signed-off-by: Austin Seipp <aseipp@pobox.com>
---
 pkgs/development/python-modules/pytorch/default.nix | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/python-modules/pytorch/default.nix b/pkgs/development/python-modules/pytorch/default.nix
index 11fe0b5e6c46..fd3ada707624 100644
--- a/pkgs/development/python-modules/pytorch/default.nix
+++ b/pkgs/development/python-modules/pytorch/default.nix
@@ -1,6 +1,6 @@
-{ fetchurl, buildPythonPackage, pythonOlder,
+{ stdenv, fetchurl, buildPythonPackage, pythonOlder,
   cudaSupport ? false, cudatoolkit ? null, cudnn ? null,
-  fetchFromGitHub, lib, numpy, pyyaml, cffi, typing, cmake, hypothesis,
+  fetchFromGitHub, lib, numpy, pyyaml, cffi, typing, cmake, hypothesis, numactl,
   linkFarm, symlinkJoin,
   utillinux, which }:
 
@@ -77,7 +77,8 @@ in buildPythonPackage rec {
      numpy.blas
      utillinux
      which
-  ] ++ lib.optionals cudaSupport [cudatoolkit_joined cudnn];
+  ] ++ lib.optionals cudaSupport [ cudatoolkit_joined cudnn ]
+    ++ lib.optionals stdenv.isLinux [ numactl ];
 
   propagatedBuildInputs = [
     cffi

From af53114a093a57649bb6c827da0618fd4b42c82e Mon Sep 17 00:00:00 2001
From: Austin Seipp <aseipp@pobox.com>
Date: Mon, 24 Dec 2018 20:00:13 -0600
Subject: [PATCH 20/39] pythonPackages.pytorch: fix Intel MKL BLAS compile
 failure

Signed-off-by: Austin Seipp <aseipp@pobox.com>
---
 pkgs/development/python-modules/pytorch/default.nix | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/pkgs/development/python-modules/pytorch/default.nix b/pkgs/development/python-modules/pytorch/default.nix
index fd3ada707624..8b9ba07ce953 100644
--- a/pkgs/development/python-modules/pytorch/default.nix
+++ b/pkgs/development/python-modules/pytorch/default.nix
@@ -72,6 +72,11 @@ in buildPythonPackage rec {
   PYTORCH_BUILD_VERSION = version;
   PYTORCH_BUILD_NUMBER = 0;
 
+  # Suppress a weird warning in mkl-dnn, part of ideep in pytorch
+  # (upstream seems to have fixed this in the wrong place?)
+  # https://github.com/intel/mkl-dnn/commit/8134d346cdb7fe1695a2aa55771071d455fae0bc
+  NIX_CFLAGS_COMPILE = lib.optionals (numpy.blasImplementation == "mkl") [ "-Wno-error=array-bounds" ];
+
   buildInputs = [
      cmake
      numpy.blas

From d30a200ab23a4dfa388ce65bd8c2831540289f32 Mon Sep 17 00:00:00 2001
From: Robert Helgesson <robert@rycee.net>
Date: Tue, 25 Dec 2018 18:11:28 +0100
Subject: [PATCH 21/39] eclipse-plugin-spotbugs: 3.1.9 -> 3.1.10

---
 pkgs/applications/editors/eclipse/plugins.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/editors/eclipse/plugins.nix b/pkgs/applications/editors/eclipse/plugins.nix
index 9595bfe4d8ba..30f381644ac1 100644
--- a/pkgs/applications/editors/eclipse/plugins.nix
+++ b/pkgs/applications/editors/eclipse/plugins.nix
@@ -555,12 +555,12 @@ rec {
 
   spotbugs = buildEclipseUpdateSite rec {
     name = "spotbugs-${version}";
-    version = "3.1.9";
+    version = "3.1.10";
 
     src = fetchzip {
       stripRoot = false;
       url = "https://github.com/spotbugs/spotbugs/releases/download/${version}/eclipsePlugin.zip";
-      sha256 = "0m68jbyaiz0rm4qq3nnwnvgndzv2c6ay6i29kh0p0vdbanggq3xz";
+      sha256 = "0xrflgw0h05z3za784ach2fx6dh04lgmfr426m1q235vv2ibds5y";
     };
 
     meta = with stdenv.lib; {

From f53e7518583cc9aa8fe6ed6b6f141d3c2f023998 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Tue, 25 Dec 2018 09:54:59 -0800
Subject: [PATCH 22/39] libhandy: 0.0.5 -> 0.0.6

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/libhandy/versions
---
 pkgs/development/libraries/libhandy/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/libhandy/default.nix b/pkgs/development/libraries/libhandy/default.nix
index 7e80ec817d19..1d07fe6ca268 100644
--- a/pkgs/development/libraries/libhandy/default.nix
+++ b/pkgs/development/libraries/libhandy/default.nix
@@ -6,7 +6,7 @@
 
 let
   pname = "libhandy";
-  version = "0.0.5";
+  version = "0.0.6";
 in stdenv.mkDerivation rec {
   name = "${pname}-${version}";
 
@@ -18,7 +18,7 @@ in stdenv.mkDerivation rec {
     owner = "Librem5";
     repo = pname;
     rev = "v${version}";
-    sha256 = "0h25ckdfx3slc2mn4vi06bhw42nrqpzn75i9d7wby9iq0cl13l08";
+    sha256 = "0gmqsxkpi288qjfdczfrbvjqyy9sbn3gligqwgqj27ask95zl1q5";
   };
 
   nativeBuildInputs = [

From e32a9ca6ff691617681c30453f8027447f0ecf1c Mon Sep 17 00:00:00 2001
From: Jan Tojnar <jtojnar@gmail.com>
Date: Tue, 25 Dec 2018 18:57:21 +0100
Subject: [PATCH 23/39] =?UTF-8?q?libuchardet:=200.0.5=20=E2=86=92=200.0.6?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 .../libraries/libuchardet/default.nix         | 28 +++++++++++--------
 1 file changed, 17 insertions(+), 11 deletions(-)

diff --git a/pkgs/development/libraries/libuchardet/default.nix b/pkgs/development/libraries/libuchardet/default.nix
index 52bc0ac5cfd4..5aa26a749e4f 100644
--- a/pkgs/development/libraries/libuchardet/default.nix
+++ b/pkgs/development/libraries/libuchardet/default.nix
@@ -1,25 +1,31 @@
-{ stdenv, fetchFromGitHub, cmake }:
+{ stdenv, fetchurl, cmake }:
 
 stdenv.mkDerivation rec {
-  name = "libuchardet-${version}";
+  pname = "uchardet";
+  version = "0.0.6";
 
-  version = "0.0.5";
+  outputs = [ "bin" "out" "man" "dev" ];
 
-  src = fetchFromGitHub {
-    owner  = "BYVoid";
-    repo   = "uchardet";
-    rev    = "v${version}";
-    sha256 = "0rkym5bhq3hn7623fy0fggw0qaghha71k8bi41ywqd2lchpahrrm";
+  src = fetchurl {
+    url = "https://www.freedesktop.org/software/${pname}/releases/${pname}-${version}.tar.xz";
+    sha256 = "0q9c02b6nmw41yfsiqsnphgc3f0yg3fj31wkccp47cmwvy634lc3";
   };
 
   buildInputs = [ cmake ];
 
-  doCheck = false; # fails all the tests (ctest)
+  cmakeFlags = [
+    "-DCMAKE_SKIP_BUILD_RPATH=OFF" # for tests
+    # TODO: move the following to CMake setup hook
+    "-DCMAKE_INSTALL_BINDIR=${placeholder "bin"}/bin"
+    "-DCMAKE_INSTALL_MANDIR=${placeholder "man"}/share/man"
+  ];
+
+  doCheck = true;
 
   meta = with stdenv.lib; {
     description = "Mozilla's Universal Charset Detector C/C++ API";
-    homepage    = https://www.byvoid.com/zht/project/uchardet;
-    license     = licenses.mpl11;
+    homepage = https://www.freedesktop.org/wiki/Software/uchardet/;
+    license = licenses.mpl11;
     maintainers = with maintainers; [ cstrahan ];
     platforms = with platforms; unix;
   };

From 1f6b0950614594557d121f4cfbe75f382961b2ff Mon Sep 17 00:00:00 2001
From: Jan Tojnar <jtojnar@gmail.com>
Date: Sun, 18 Nov 2018 11:49:00 +0100
Subject: [PATCH 24/39] gtest: build shared library

Arch provides shared library as well.
---
 pkgs/development/libraries/gtest/default.nix | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/pkgs/development/libraries/gtest/default.nix b/pkgs/development/libraries/gtest/default.nix
index cf4069871d1d..06fffc4f5240 100644
--- a/pkgs/development/libraries/gtest/default.nix
+++ b/pkgs/development/libraries/gtest/default.nix
@@ -3,6 +3,8 @@ stdenv.mkDerivation rec {
   name = "gtest-${version}";
   version = "1.8.1";
 
+  outputs = [ "out" "dev" ];
+
   src = fetchFromGitHub {
     owner = "google";
     repo = "googletest";
@@ -12,6 +14,10 @@ stdenv.mkDerivation rec {
 
   nativeBuildInputs = [ cmake ninja ];
 
+  cmakeFlags = [
+    "-DBUILD_SHARED_LIBS=ON"
+  ];
+
   meta = with stdenv.lib; {
     description = "Google's framework for writing C++ tests";
     homepage = https://github.com/google/googletest;

From c1e10bd2582ed85466ed401228acf2112a2ecdd0 Mon Sep 17 00:00:00 2001
From: Alexandre Peyroux <alex@px.io>
Date: Tue, 25 Dec 2018 23:28:59 +0100
Subject: [PATCH 25/39] masterpdfeditor: 5.1.60 -> 5.2.20

---
 pkgs/applications/misc/masterpdfeditor/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/misc/masterpdfeditor/default.nix b/pkgs/applications/misc/masterpdfeditor/default.nix
index 1cb472ff0194..2928d271efcf 100644
--- a/pkgs/applications/misc/masterpdfeditor/default.nix
+++ b/pkgs/applications/misc/masterpdfeditor/default.nix
@@ -1,14 +1,14 @@
 { stdenv, fetchurl, sane-backends, qtbase, qtsvg, nss, autoPatchelfHook, lib, makeWrapper }:
 
 let
-  version = "5.1.60";
+  version = "5.2.20";
 
 in stdenv.mkDerivation {
   name = "masterpdfeditor-${version}";
 
   src = fetchurl {
     url = "https://code-industry.net/public/master-pdf-editor-${version}_qt5.amd64.tar.gz";
-    sha256 = "0br5f04klzpbd25igbjjj1dqasmrcrw2zsan5bv0ydnr2lmpb2fz";
+    sha256 = "1399zv3m7a2rxvmy213f5yii3krsqyahpwdzsw8j535xrb9f3z1m";
   };
 
   nativeBuildInputs = [ autoPatchelfHook makeWrapper ];

From 981ecaad30658e4614b0b393ec23139dd6ace440 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Tue, 25 Dec 2018 15:08:33 -0800
Subject: [PATCH 26/39] girara: 0.3.1 -> 0.3.2

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/girara/versions
---
 pkgs/applications/misc/girara/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/misc/girara/default.nix b/pkgs/applications/misc/girara/default.nix
index 0dfeac3cf8b2..919f20f13983 100644
--- a/pkgs/applications/misc/girara/default.nix
+++ b/pkgs/applications/misc/girara/default.nix
@@ -3,11 +3,11 @@
 
 stdenv.mkDerivation rec {
   name = "girara-${version}";
-  version = "0.3.1";
+  version = "0.3.2";
 
   src = fetchurl {
     url = "https://pwmt.org/projects/girara/download/${name}.tar.xz";
-    sha256 = "1ddwap5q5cnfdr1q1b110wy7mw1z3khn86k01jl8lqmn02n9nh1w";
+    sha256 = "1kc6n1mxjxa7wvwnqy94qfg8l9jvx9qrvrr2kc7m4g0z20x3a00p";
   };
 
   nativeBuildInputs = [ meson ninja pkgconfig gettext ];

From c65edd687f11a5b16b79bc90b129ccdf9b8bc902 Mon Sep 17 00:00:00 2001
From: worldofpeace <worldofpeace@users.noreply.github.com>
Date: Thu, 20 Dec 2018 12:46:05 -0500
Subject: [PATCH 27/39] geoclue2: correct sysconfdir

---
 nixos/modules/services/desktops/geoclue2.nix  |  2 +
 ...d-option-for-installation-sysconfdir.patch | 55 +++++++++++++++++++
 .../development/libraries/geoclue/default.nix |  6 ++
 3 files changed, 63 insertions(+)
 create mode 100644 pkgs/development/libraries/geoclue/add-option-for-installation-sysconfdir.patch

diff --git a/nixos/modules/services/desktops/geoclue2.nix b/nixos/modules/services/desktops/geoclue2.nix
index dafb0af20756..840aa5294ed0 100644
--- a/nixos/modules/services/desktops/geoclue2.nix
+++ b/nixos/modules/services/desktops/geoclue2.nix
@@ -61,6 +61,8 @@ in
         wantedBy = [ "default.target" ];
       };
     };
+
+    environment.etc."geoclue/geoclue.conf".source = "${package}/etc/geoclue/geoclue.conf";
   };
 
 }
diff --git a/pkgs/development/libraries/geoclue/add-option-for-installation-sysconfdir.patch b/pkgs/development/libraries/geoclue/add-option-for-installation-sysconfdir.patch
new file mode 100644
index 000000000000..629ea102971b
--- /dev/null
+++ b/pkgs/development/libraries/geoclue/add-option-for-installation-sysconfdir.patch
@@ -0,0 +1,55 @@
+--- a/data/meson.build
++++ b/data/meson.build
+@@ -7,7 +7,7 @@
+         conf.set('demo_agent', '')
+     endif
+ 
+-    conf_dir = join_paths(get_option('sysconfdir'), 'geoclue')
++    conf_dir = join_paths(sysconfdir_install, 'geoclue')
+     configure_file(output: 'geoclue.conf',
+                    input: 'geoclue.conf.in',
+                    configuration: conf,
+@@ -26,7 +26,7 @@
+     # DBus Service policy file
+     dbus_service_dir = get_option('dbus-sys-dir')
+     if dbus_service_dir  == ''
+-        dbus_service_dir = join_paths(get_option('sysconfdir'), 'dbus-1', 'system.d')
++        dbus_service_dir = join_paths(sysconfdir_install, 'dbus-1', 'system.d')
+     endif
+     configure_file(output: 'org.freedesktop.GeoClue2.conf',
+                    input: 'org.freedesktop.GeoClue2.conf.in',
+--- a/demo/meson.build
++++ b/demo/meson.build
+@@ -56,8 +56,7 @@
+                                    install_dir: desktop_dir)
+ 
+     # Also install in the autostart directory.
+-    autostart_dir = join_paths(get_option('prefix'),
+-                               get_option('sysconfdir'),
++    autostart_dir = join_paths(sysconfdir_install,
+                                'xdg', 'autostart')
+     meson.add_install_script('install-file.py',
+                              desktop_file.full_path(),
+--- a/meson.build
++++ b/meson.build
+@@ -22,6 +22,11 @@
+ datadir = join_paths(get_option('prefix'), get_option('datadir'))
+ conf.set_quoted('LOCALEDIR', datadir + '/locale')
+ conf.set_quoted('SYSCONFDIR', get_option('sysconfdir'))
++if get_option('sysconfdir_install') != ''
++  sysconfdir_install = join_paths(get_option('prefix'), get_option('sysconfdir_install'))
++else
++  sysconfdir_install = get_option('sysconfdir')
++endif
+ 
+ configure_file(output: 'config.h', configuration : conf)
+ configinc = include_directories('.')
+--- a/meson_options.txt
++++ b/meson_options.txt
+@@ -34,3 +34,6 @@
+ option('dbus-srv-user',
+        type: 'string', value: 'root',
+        description: 'The user (existing) as which the service will run')
++option('sysconfdir_install',
++       type: 'string', value: '',
++       description: 'sysconfdir to use during installation')
diff --git a/pkgs/development/libraries/geoclue/default.nix b/pkgs/development/libraries/geoclue/default.nix
index f2eeb9ae40b8..5e83ba71c1bc 100644
--- a/pkgs/development/libraries/geoclue/default.nix
+++ b/pkgs/development/libraries/geoclue/default.nix
@@ -17,6 +17,10 @@ stdenv.mkDerivation rec {
     sha256 = "0vww6irijw5ss7vawkdi5z5wdpcgw4iqljn5vs3vbd4y3d0lzrbs";
   };
 
+  patches = [
+    ./add-option-for-installation-sysconfdir.patch
+  ];
+
   outputs = [ "out" "dev" "devdoc" ];
 
   nativeBuildInputs = [
@@ -36,6 +40,8 @@ stdenv.mkDerivation rec {
   mesonFlags = [
     "-Dsystemd-system-unit-dir=${placeholder "out"}/etc/systemd/system"
     "-Ddemo-agent=${if withDemoAgent then "true" else "false"}"
+    "--sysconfdir=/etc"
+    "-Dsysconfdir_install=${placeholder "out"}/etc"
   ] ++ optionals stdenv.isDarwin [
     "-D3g-source=false"
     "-Dcdma-source=false"

From 5f9cd7475cac34ec55e55d28b46891ed4d33855f Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Tue, 25 Dec 2018 16:46:38 -0800
Subject: [PATCH 28/39] jsonnet: 0.11.2 -> 0.12.1 (#52874)

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/jsonnet/versions
---
 pkgs/development/compilers/jsonnet/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/compilers/jsonnet/default.nix b/pkgs/development/compilers/jsonnet/default.nix
index 15eec4134acf..6104ffc7aaa3 100644
--- a/pkgs/development/compilers/jsonnet/default.nix
+++ b/pkgs/development/compilers/jsonnet/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   name = "jsonnet-${version}";
-  version = "0.11.2";
+  version = "0.12.1";
 
   src = fetchFromGitHub {
     rev = "v${version}";
     owner = "google";
     repo = "jsonnet";
-    sha256 = "05rl5i4g36k2ikxv4sw726mha1qf5bb66wiqpi0s09wj9azm7vym";
+    sha256 = "13a0sf1k8ivxhc28w0d0axzr0sj3jccl9sjq6l0dkyzrnmbxzmkb";
   };
 
   enableParallelBuilding = true;

From f2eb5692506d54ffddaf2410313293d6d58d6d8b Mon Sep 17 00:00:00 2001
From: Orivej Desh <orivej@gmx.fr>
Date: Tue, 25 Dec 2018 23:53:00 +0000
Subject: [PATCH 29/39] psi-plus: 1.4.404 -> 1.4.504

---
 .../networking/instant-messengers/psi-plus/default.nix        | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/networking/instant-messengers/psi-plus/default.nix b/pkgs/applications/networking/instant-messengers/psi-plus/default.nix
index d01019a56197..e1a2fb40c5ae 100644
--- a/pkgs/applications/networking/instant-messengers/psi-plus/default.nix
+++ b/pkgs/applications/networking/instant-messengers/psi-plus/default.nix
@@ -5,13 +5,13 @@
 
 stdenv.mkDerivation rec {
   name = "psi-plus-${version}";
-  version = "1.4.404";
+  version = "1.4.504";
 
   src = fetchFromGitHub {
     owner = "psi-plus";
     repo = "psi-plus-snapshots";
     rev = "${version}";
-    sha256 = "05dcr1i7ic6nff70w4zfpdcmwf19kkhgxm7mcznmlr484d5i1v2m";
+    sha256 = "1nv1ynad2gcn7r8mm2w3kixmahaql7xax1lccsqyxqmj1r0klk8q";
   };
 
   resources = fetchFromGitHub {

From c6f90688045073c5624b65e42e0a4be1564b7c2c Mon Sep 17 00:00:00 2001
From: Orivej Desh <orivej@gmx.fr>
Date: Tue, 25 Dec 2018 23:10:21 +0000
Subject: [PATCH 30/39] pythonPackages.parsel: fix for Python 2

---
 pkgs/development/python-modules/parsel/default.nix | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/python-modules/parsel/default.nix b/pkgs/development/python-modules/parsel/default.nix
index 0135b98cbda7..9ebd5e9b9ea2 100644
--- a/pkgs/development/python-modules/parsel/default.nix
+++ b/pkgs/development/python-modules/parsel/default.nix
@@ -1,8 +1,9 @@
-{ stdenv
+{ lib
 , buildPythonPackage
 , fetchPypi
 , pytest
 , pytestrunner
+, functools32
 , six
 , w3lib
 , lxml
@@ -19,13 +20,13 @@ buildPythonPackage rec {
   };
 
   buildInputs = [ pytest pytestrunner ];
-  propagatedBuildInputs = [ six w3lib lxml cssselect ];
+  propagatedBuildInputs = [ functools32 six w3lib lxml cssselect ];
 
   checkPhase = ''
     py.test
   '';
 
-  meta = with stdenv.lib; {
+  meta = with lib; {
     homepage = "https://github.com/scrapy/parsel";
     description = "Parsel is a library to extract data from HTML and XML using XPath and CSS selectors";
     license = licenses.bsd3;

From 6137c6de6c521ee70e69d2a1edf49155ee13d823 Mon Sep 17 00:00:00 2001
From: Orivej Desh <orivej@gmx.fr>
Date: Wed, 26 Dec 2018 01:09:06 +0000
Subject: [PATCH 31/39] pythonPackages.secretstorage: fix license

---
 pkgs/development/python-modules/secretstorage/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/python-modules/secretstorage/default.nix b/pkgs/development/python-modules/secretstorage/default.nix
index c0df4d4a878e..bff45c7f2c3c 100644
--- a/pkgs/development/python-modules/secretstorage/default.nix
+++ b/pkgs/development/python-modules/secretstorage/default.nix
@@ -24,7 +24,7 @@ buildPythonPackage rec {
   meta = with lib; {
     homepage = https://github.com/mitya57/secretstorage;
     description = "Python bindings to FreeDesktop.org Secret Service API";
-    license = licenses.bsdOriginal;
+    license = licenses.bsd3;
     maintainers = with maintainers; [ teto ];
   };
 }

From 84d133c8451646d4a55a2365b16983d08e41461a Mon Sep 17 00:00:00 2001
From: Orivej Desh <orivej@gmx.fr>
Date: Tue, 25 Dec 2018 23:09:53 +0000
Subject: [PATCH 32/39] pythonPackages.secretstorage: init at 2.3.1 for Python
 2

---
 .../python-modules/secretstorage/2.nix        | 24 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  4 +++-
 2 files changed, 27 insertions(+), 1 deletion(-)
 create mode 100644 pkgs/development/python-modules/secretstorage/2.nix

diff --git a/pkgs/development/python-modules/secretstorage/2.nix b/pkgs/development/python-modules/secretstorage/2.nix
new file mode 100644
index 000000000000..8fa044e638a4
--- /dev/null
+++ b/pkgs/development/python-modules/secretstorage/2.nix
@@ -0,0 +1,24 @@
+{ lib, fetchPypi, buildPythonPackage, cryptography, dbus-python }:
+
+buildPythonPackage rec {
+  pname = "secretstorage";
+  version = "2.3.1";
+
+  src = fetchPypi {
+    pname = "SecretStorage";
+    inherit version;
+    sha256 = "1di9gx4m27brs6ar774m64s017iz742mnmw39kvfc8skfs3mrxis";
+  };
+
+  propagatedBuildInputs = [ cryptography dbus-python ];
+
+  # Needs a D-Bus Sesison
+  doCheck = false;
+
+  meta = with lib; {
+    homepage = https://github.com/mitya57/secretstorage;
+    description = "Python bindings to FreeDesktop.org Secret Service API";
+    license = licenses.bsd3;
+    maintainers = with maintainers; [ orivej ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index a64ce4e869c1..d3e384d8ed26 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -4258,7 +4258,9 @@ in {
 
   blessings = callPackage ../development/python-modules/blessings { };
 
-  secretstorage = callPackage ../development/python-modules/secretstorage { };
+  secretstorage = if isPy3k
+    then callPackage ../development/python-modules/secretstorage { }
+    else callPackage ../development/python-modules/secretstorage/2.nix { };
 
   semantic = callPackage ../development/python-modules/semantic { };
 

From 3fd67fbb42d94fefe32af5955a546d146b5f7eb8 Mon Sep 17 00:00:00 2001
From: Orivej Desh <orivej@gmx.fr>
Date: Wed, 26 Dec 2018 02:26:46 +0000
Subject: [PATCH 33/39] pythonPackages.taskw: fix build

Broken by 8600798172e6a4c526d593ec8da48ce28cf0d15c in #49741.
---
 .../python-modules/taskw/default.nix          |  3 +-
 ...emplate-for-taskwarrior-install-path.patch | 42 ++-----------------
 2 files changed, 6 insertions(+), 39 deletions(-)

diff --git a/pkgs/development/python-modules/taskw/default.nix b/pkgs/development/python-modules/taskw/default.nix
index 328eb158eefb..d2d12ca0b962 100644
--- a/pkgs/development/python-modules/taskw/default.nix
+++ b/pkgs/development/python-modules/taskw/default.nix
@@ -5,6 +5,7 @@
 , tox
 , six
 , dateutil
+, kitchen
 , pytz
 , pkgs
 }:
@@ -28,7 +29,7 @@ buildPythonPackage rec {
   doCheck = false;
 
   buildInputs = [ nose pkgs.taskwarrior tox ];
-  propagatedBuildInputs = [ six dateutil pytz ];
+  propagatedBuildInputs = [ six dateutil kitchen pytz ];
 
   meta = with stdenv.lib; {
     homepage =  https://github.com/ralphbean/taskw;
diff --git a/pkgs/development/python-modules/taskw/use-template-for-taskwarrior-install-path.patch b/pkgs/development/python-modules/taskw/use-template-for-taskwarrior-install-path.patch
index 006d964d4016..8c7685c9d03b 100644
--- a/pkgs/development/python-modules/taskw/use-template-for-taskwarrior-install-path.patch
+++ b/pkgs/development/python-modules/taskw/use-template-for-taskwarrior-install-path.patch
@@ -4,45 +4,11 @@ Date:   Sun Nov 16 15:19:38 2014 +0100
 
     Use a template for taskwarrior install path.
 
-diff --git a/taskw/warrior.py b/taskw/warrior.py
-index 21dde88..e0509f2 100644
 --- a/taskw/warrior.py
 +++ b/taskw/warrior.py
-@@ -451,17 +451,17 @@ class TaskWarriorShellout(TaskWarriorBase):
-     def _execute(self, *args):
-         """ Execute a given taskwarrior command with arguments
- 
-         Returns a 2-tuple of stdout and stderr (respectively).
- 
-         """
-         command = (
-             [
+@@ -449 +449 @@ class TaskWarriorShellout(TaskWarriorBase):
 -                'task',
 +                '@@taskwarrior@@/bin/task',
-                 'rc:%s' % self.config_filename,
-             ]
-             + self.get_configuration_override_args()
-             + [six.text_type(arg) for arg in args]
-         )
- 
-         # subprocess is expecting bytestrings only, so nuke unicode if present
-         for i in range(len(command)):
-@@ -525,17 +525,17 @@ class TaskWarriorShellout(TaskWarriorBase):
-         except OSError:
-             # OSError is raised if subprocess.Popen fails to find
-             # the executable.
-             return False
- 
-     @classmethod
-     def get_version(cls):
-         taskwarrior_version = subprocess.Popen(
--            ['task', '--version'],
-+            ['@@taskwarrior@@/bin/task', '--version'],
-             stdout=subprocess.PIPE
-         ).communicate()[0]
-         return LooseVersion(taskwarrior_version.decode())
- 
-     def sync(self, init=False):
-         if self.get_version() < LooseVersion('2.3'):
-             raise UnsupportedVersionException(
-                 "'sync' requires version 2.3 of taskwarrior or later."
+@@ -553 +553 @@ class TaskWarriorShellout(TaskWarriorBase):
+-                ['task', '--version'],
++                ['@@taskwarrior@@/bin/task', '--version'],

From 4f909b59b46e273cfb0682df6131e3e3124e0833 Mon Sep 17 00:00:00 2001
From: Orivej Desh <orivej@gmx.fr>
Date: Wed, 26 Dec 2018 02:30:48 +0000
Subject: [PATCH 34/39] pythonPackages.goobook: fix build

Broken by e42495282650010acabaad76e5b7f27de4315665 in #49741.
---
 pkgs/development/python-modules/goobook/default.nix | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/pkgs/development/python-modules/goobook/default.nix b/pkgs/development/python-modules/goobook/default.nix
index 599132f0f2c2..4a3c3dc3bcb7 100644
--- a/pkgs/development/python-modules/goobook/default.nix
+++ b/pkgs/development/python-modules/goobook/default.nix
@@ -4,6 +4,7 @@
 , isPy3k
 , oauth2client
 , gdata
+, google_api_python_client
 , simplejson
 , httplib2
 , keyring
@@ -21,7 +22,7 @@ buildPythonPackage rec {
     sha256 = "139a98d646d5c5963670944d5cfcc1a107677ee11fa98329221bd600457fda6d";
   };
 
-  propagatedBuildInputs = [ oauth2client gdata simplejson httplib2 keyring six rsa ];
+  propagatedBuildInputs = [ oauth2client gdata google_api_python_client simplejson httplib2 keyring six rsa ];
 
   preConfigure = ''
     sed -i '/distribute/d' setup.py

From 669705c6205a7feccf4c3ff52a8e5448571b87d1 Mon Sep 17 00:00:00 2001
From: Orivej Desh <orivej@gmx.fr>
Date: Wed, 26 Dec 2018 02:33:07 +0000
Subject: [PATCH 35/39] pythonPackages.ofxparse: fix build

Broken by 0fde2cf4e140d6ca93303bb4622195176ffa94b2 in #49741.
---
 pkgs/development/python-modules/ofxparse/default.nix | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/pkgs/development/python-modules/ofxparse/default.nix b/pkgs/development/python-modules/ofxparse/default.nix
index fbbd3899420b..377138877c9c 100644
--- a/pkgs/development/python-modules/ofxparse/default.nix
+++ b/pkgs/development/python-modules/ofxparse/default.nix
@@ -3,6 +3,7 @@
 , fetchPypi
 , six
 , beautifulsoup4
+, lxml
 }:
 
 buildPythonPackage rec {
@@ -14,7 +15,7 @@ buildPythonPackage rec {
     sha256 = "d8c81fd5089332106da1a2e8919c412c7c677f08af04d557ca767701a04e0918";
   };
 
-  propagatedBuildInputs = [ six beautifulsoup4 ];
+  propagatedBuildInputs = [ six beautifulsoup4 lxml ];
 
   meta = with stdenv.lib; {
     homepage = "http://sites.google.com/site/ofxparse";

From 2102ff090d07fc388eccb2be75c3cdf50369c0da Mon Sep 17 00:00:00 2001
From: Orivej Desh <orivej@gmx.fr>
Date: Wed, 26 Dec 2018 02:41:38 +0000
Subject: [PATCH 36/39] pythonPackages.jsonrpclib-pelix: disable tests

Version 0.3.2 has started to advertise the tests in setup.py, but there are no
tests in the PyPI distribution.
---
 pkgs/development/python-modules/jsonrpclib-pelix/default.nix | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/pkgs/development/python-modules/jsonrpclib-pelix/default.nix b/pkgs/development/python-modules/jsonrpclib-pelix/default.nix
index 2e3ef0545984..5e6d6ceab9b0 100644
--- a/pkgs/development/python-modules/jsonrpclib-pelix/default.nix
+++ b/pkgs/development/python-modules/jsonrpclib-pelix/default.nix
@@ -12,6 +12,8 @@ buildPythonPackage rec {
     sha256 = "14d288d1b3d3273cf96a729dd21a2470851c4962be8509f3dd62f0137ff90339";
   };
 
+  doCheck = false; # test_suite="tests" in setup.py but no tests in pypi.
+
   meta = with lib; {
     description = "JSON RPC client library - Pelix compatible fork";
     homepage = https://pypi.python.org/pypi/jsonrpclib-pelix/;

From 483b87ba090b8db10b92fb908c48eb530c15245f Mon Sep 17 00:00:00 2001
From: Orivej Desh <orivej@gmx.fr>
Date: Tue, 25 Dec 2018 23:06:37 +0000
Subject: [PATCH 37/39] pythonPackages.qrcode: disable tests with Python 3

They fail since qrcode 6.0:
https://hydra.nixos.org/job/nixpkgs/trunk/python37Packages.qrcode.x86_64-linux

Upstream issue: https://github.com/lincolnloop/python-qrcode/issues/163
---
 pkgs/development/python-modules/qrcode/default.nix | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/pkgs/development/python-modules/qrcode/default.nix b/pkgs/development/python-modules/qrcode/default.nix
index ca751e4ce783..fedff05d8133 100644
--- a/pkgs/development/python-modules/qrcode/default.nix
+++ b/pkgs/development/python-modules/qrcode/default.nix
@@ -1,5 +1,6 @@
 { stdenv
 , buildPythonPackage
+, isPy27
 , fetchPypi
 , six
 , pillow
@@ -18,6 +19,7 @@ buildPythonPackage rec {
 
   propagatedBuildInputs = [ six pillow pymaging_png ];
   checkInputs = [ mock ];
+  doCheck = isPy27; # https://github.com/lincolnloop/python-qrcode/issues/163
 
   meta = with stdenv.lib; {
     description = "Quick Response code generation for Python";

From 8b12b17df3a8b5141e7a848641933cec28818ffa Mon Sep 17 00:00:00 2001
From: Craig Younkins <cyounkins@gmail.com>
Date: Fri, 30 Nov 2018 01:19:05 +0000
Subject: [PATCH 38/39] treewide: Fix broken Gmane URLs

---
 nixos/doc/manual/release-notes/rl-1412.xml      | 2 +-
 pkgs/build-support/fetchgit/nix-prefetch-git    | 2 +-
 pkgs/development/libraries/adns/default.nix     | 2 +-
 pkgs/development/tools/misc/dejagnu/default.nix | 2 +-
 pkgs/os-specific/linux/ati-drivers/default.nix  | 2 +-
 pkgs/tools/misc/coreutils/default.nix           | 4 ++--
 6 files changed, 7 insertions(+), 7 deletions(-)

diff --git a/nixos/doc/manual/release-notes/rl-1412.xml b/nixos/doc/manual/release-notes/rl-1412.xml
index 4d93aa644c1d..139f61c2a550 100644
--- a/nixos/doc/manual/release-notes/rl-1412.xml
+++ b/nixos/doc/manual/release-notes/rl-1412.xml
@@ -17,7 +17,7 @@
    </listitem>
    <listitem>
     <para>
-     <link xlink:href="http://thread.gmane.org/gmane.linux.distributions.nixos/15165">
+     <link xlink:href="https://www.mail-archive.com/nix-dev@lists.science.uu.nl/msg13957.html">
      Nix has been updated to 1.8.</link>
     </para>
    </listitem>
diff --git a/pkgs/build-support/fetchgit/nix-prefetch-git b/pkgs/build-support/fetchgit/nix-prefetch-git
index 34dfe67df4bd..fa4e504c908f 100755
--- a/pkgs/build-support/fetchgit/nix-prefetch-git
+++ b/pkgs/build-support/fetchgit/nix-prefetch-git
@@ -152,7 +152,7 @@ checkout_ref(){
     if "$deepClone"; then
         # The caller explicitly asked for a deep clone.  Deep clones
         # allow "git describe" and similar tools to work.  See
-        # http://thread.gmane.org/gmane.linux.distributions.nixos/3569
+        # https://marc.info/?l=nix-dev&m=139641582514772
         # for a discussion.
         return 1
     fi
diff --git a/pkgs/development/libraries/adns/default.nix b/pkgs/development/libraries/adns/default.nix
index 0f0e30ef0f3b..76e49768d53d 100644
--- a/pkgs/development/libraries/adns/default.nix
+++ b/pkgs/development/libraries/adns/default.nix
@@ -18,7 +18,7 @@ stdenv.mkDerivation {
   preConfigure =
     stdenv.lib.optionalString stdenv.isDarwin "sed -i -e 's|-Wl,-soname=$(SHLIBSONAME)||' configure";
 
-  # http://thread.gmane.org/gmane.linux.distributions.nixos/1328 for details.
+  # https://www.mail-archive.com/nix-dev@cs.uu.nl/msg01347.html for details.
   doCheck = false;
 
   postInstall = stdenv.lib.optionalString stdenv.isDarwin ''
diff --git a/pkgs/development/tools/misc/dejagnu/default.nix b/pkgs/development/tools/misc/dejagnu/default.nix
index 26eaf707b2bd..c04031bc41db 100644
--- a/pkgs/development/tools/misc/dejagnu/default.nix
+++ b/pkgs/development/tools/misc/dejagnu/default.nix
@@ -14,7 +14,7 @@ stdenv.mkDerivation rec {
 
   # Note: The test-suite *requires* /dev/pts among the `build-chroot-dirs' of
   # the build daemon when building in a chroot.  See
-  # <http://thread.gmane.org/gmane.linux.distributions.nixos/1036> for
+  # <https://www.mail-archive.com/nix-dev@cs.uu.nl/msg01056.html> for
   # details.
 
   # The test-suite needs to have a non-empty stdin:
diff --git a/pkgs/os-specific/linux/ati-drivers/default.nix b/pkgs/os-specific/linux/ati-drivers/default.nix
index cda7e03cd066..bc35d14321b4 100644
--- a/pkgs/os-specific/linux/ati-drivers/default.nix
+++ b/pkgs/os-specific/linux/ati-drivers/default.nix
@@ -19,7 +19,7 @@ with stdenv.lib;
 # make sure libglx.so of ati is used. xorg.xorgserver does provide it as well
 # which is a problem because it doesn't contain the xorgserver patch supporting
 # the XORG_DRI_DRIVER_PATH env var.
-# See http://thread.gmane.org/gmane.linux.distributions.nixos/4145 for a
+# See https://marc.info/?l=nix-dev&m=139641585515351 for a
 # workaround (TODO)
 
 # The gentoo ebuild contains much more "magic" and is usually a great resource to
diff --git a/pkgs/tools/misc/coreutils/default.nix b/pkgs/tools/misc/coreutils/default.nix
index 0ddfad65a7a1..c252a8748bce 100644
--- a/pkgs/tools/misc/coreutils/default.nix
+++ b/pkgs/tools/misc/coreutils/default.nix
@@ -63,8 +63,8 @@ stdenv.mkDerivation rec {
     ++ optional (stdenv.hostPlatform != stdenv.buildPlatform && stdenv.hostPlatform.libc != "glibc") libiconv;
 
   # The tests are known broken on Cygwin
-  # (http://thread.gmane.org/gmane.comp.gnu.core-utils.bugs/19025),
-  # Darwin (http://thread.gmane.org/gmane.comp.gnu.core-utils.bugs/19351),
+  # (http://article.gmane.org/gmane.comp.gnu.core-utils.bugs/19025),
+  # Darwin (http://article.gmane.org/gmane.comp.gnu.core-utils.bugs/19351),
   # and {Open,Free}BSD.
   # With non-standard storeDir: https://github.com/NixOS/nix/issues/512
   doCheck = stdenv.hostPlatform == stdenv.buildPlatform

From 4543559aead7172e6da78325bb1b760ddb729df2 Mon Sep 17 00:00:00 2001
From: Craig Younkins <cyounkins@gmail.com>
Date: Fri, 30 Nov 2018 01:19:05 +0000
Subject: [PATCH 39/39] net-snmp: Fix broken Gmane URL

Fixes: #52898
Fixes: #51260
---
 pkgs/servers/monitoring/net-snmp/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/servers/monitoring/net-snmp/default.nix b/pkgs/servers/monitoring/net-snmp/default.nix
index 0e7a53306eb4..d86eac719a60 100644
--- a/pkgs/servers/monitoring/net-snmp/default.nix
+++ b/pkgs/servers/monitoring/net-snmp/default.nix
@@ -28,7 +28,7 @@ stdenv.mkDerivation rec {
       perlarchname=$(perl -e 'use Config; print $Config{archname};')
       installFlags="INSTALLSITEARCH=$out/lib/perl5/site_perl/$perlversion/$perlarchname INSTALLSITEMAN3DIR=$out/share/man/man3"
 
-      # http://comments.gmane.org/gmane.network.net-snmp.user/32434
+      # http://article.gmane.org/gmane.network.net-snmp.user/32434
       substituteInPlace "man/Makefile.in" --replace 'grep -vE' '@EGREP@ -v'
     '';