diff --git a/nixos/doc/manual/README b/nixos/doc/manual/README
deleted file mode 100644
index 120c127d7af2..000000000000
--- a/nixos/doc/manual/README
+++ /dev/null
@@ -1,3 +0,0 @@
-Moved to: ./contributing-to-this-manual.xml. Link:
-
-https://nixos.org/manual/nixos/unstable/#chap-contributing
diff --git a/nixos/doc/manual/README.md b/nixos/doc/manual/README.md
new file mode 100644
index 000000000000..bc649761df69
--- /dev/null
+++ b/nixos/doc/manual/README.md
@@ -0,0 +1,3 @@
+[Moved to ./contributing-to-this-manual.chapter.md](./contributing-to-this-manual.chapter.md). Link:
+
+https://nixos.org/manual/nixos/unstable/#chap-contributing
diff --git a/pkgs/applications/editors/emacs/elisp-packages/ebuild-mode/default.nix b/pkgs/applications/editors/emacs/elisp-packages/ebuild-mode/default.nix
index 1e4036b4c27d..f3adf4b9ea79 100644
--- a/pkgs/applications/editors/emacs/elisp-packages/ebuild-mode/default.nix
+++ b/pkgs/applications/editors/emacs/elisp-packages/ebuild-mode/default.nix
@@ -5,7 +5,7 @@ trivialBuild rec {
   version = "1.52";
 
   src = fetchurl {
-    url = "https://dev.gentoo.org/~ulm/emacs/ebuild-mode-${version}.tar.xz";
+    url = "https://dev.gentoo.org/~ulm/emacs/${pname}-${version}.tar.xz";
     sha256 = "10nikbbwh612qlnms2i31963a0h3ccyg85vrxlizdpsqs4cjpg6h";
   };
 
diff --git a/pkgs/applications/editors/emacs/elisp-packages/elpa-generated.nix b/pkgs/applications/editors/emacs/elisp-packages/elpa-generated.nix
index 8a87889e7028..10a4a2cab5ef 100644
--- a/pkgs/applications/editors/emacs/elisp-packages/elpa-generated.nix
+++ b/pkgs/applications/editors/emacs/elisp-packages/elpa-generated.nix
@@ -125,20 +125,16 @@
           license = lib.licenses.free;
         };
       }) {};
-    aggressive-indent = callPackage ({ cl-lib ? null
-                                     , elpaBuild
-                                     , emacs
-                                     , fetchurl
-                                     , lib }:
+    aggressive-indent = callPackage ({ elpaBuild, emacs, fetchurl, lib }:
       elpaBuild {
         pname = "aggressive-indent";
         ename = "aggressive-indent";
-        version = "1.8.3";
+        version = "1.10.0";
         src = fetchurl {
-          url = "https://elpa.gnu.org/packages/aggressive-indent-1.8.3.el";
-          sha256 = "0jnzccl50x0wapprgwxinp99pwwa6j43q6msn4gv437j7swy8wnj";
+          url = "https://elpa.gnu.org/packages/aggressive-indent-1.10.0.tar";
+          sha256 = "166jk1z0vw481lfi3gbg7f9vsgwfv8fiyxpkfphgvgcmf5phv4q1";
         };
-        packageRequires = [ cl-lib emacs ];
+        packageRequires = [ emacs ];
         meta = {
           homepage = "https://elpa.gnu.org/packages/aggressive-indent.html";
           license = lib.licenses.free;
@@ -670,10 +666,10 @@
       elpaBuild {
         pname = "corfu";
         ename = "corfu";
-        version = "0.9";
+        version = "0.10";
         src = fetchurl {
-          url = "https://elpa.gnu.org/packages/corfu-0.9.tar";
-          sha256 = "0710bq07j6w6zm49ci1bbx580frdbc62b3hbxwzkwm5204nf78bf";
+          url = "https://elpa.gnu.org/packages/corfu-0.10.tar";
+          sha256 = "0sqr4cld84vgfnf0fjgvbbix1p23s0n2xsszfap6d8a2xzzpp044";
         };
         packageRequires = [ emacs ];
         meta = {
@@ -775,10 +771,10 @@
       elpaBuild {
         pname = "dash";
         ename = "dash";
-        version = "2.18.1";
+        version = "2.19.0";
         src = fetchurl {
-          url = "https://elpa.gnu.org/packages/dash-2.18.1.tar";
-          sha256 = "17mrvmrfh5c3kri4r3gf1c3gz4i5vl9ac60grpx4103b56y4cgra";
+          url = "https://elpa.gnu.org/packages/dash-2.19.0.tar";
+          sha256 = "0qszjs60xxqjiqf5f2bgmnbx5jiqii4ghcydwg500za0n2j0f5sx";
         };
         packageRequires = [ emacs ];
         meta = {
@@ -1015,10 +1011,10 @@
       elpaBuild {
         pname = "ebdb";
         ename = "ebdb";
-        version = "0.6.24";
+        version = "0.7";
         src = fetchurl {
-          url = "https://elpa.gnu.org/packages/ebdb-0.6.24.tar";
-          sha256 = "0156rh6fkv2yp509h6i8qzh4gsda2mcmfrxl4r6ywn1z5ahijc3r";
+          url = "https://elpa.gnu.org/packages/ebdb-0.7.tar";
+          sha256 = "0q4ywgh87d6hjac3031s21w91gld2hh7s8nbva94dnzwn6y9d0v1";
         };
         packageRequires = [ cl-lib emacs seq ];
         meta = {
@@ -1075,10 +1071,10 @@
       elpaBuild {
         pname = "eev";
         ename = "eev";
-        version = "20210618";
+        version = "20210710";
         src = fetchurl {
-          url = "https://elpa.gnu.org/packages/eev-20210618.tar";
-          sha256 = "13sb9shpj9fhns8sl3dxdgnn8z4wf14mgi4s87k5x4nrr012sscf";
+          url = "https://elpa.gnu.org/packages/eev-20210710.tar";
+          sha256 = "19k5yncyjg7afvkx54k9mplm86jyr3svjjyprrj1frdi219i5piw";
         };
         packageRequires = [ emacs ];
         meta = {
@@ -2321,10 +2317,10 @@
       elpaBuild {
         pname = "modus-themes";
         ename = "modus-themes";
-        version = "1.4.0";
+        version = "1.5.0";
         src = fetchurl {
-          url = "https://elpa.gnu.org/packages/modus-themes-1.4.0.tar";
-          sha256 = "0ssckl06jk08vaq4g7sxpzvc3ybm339fzbn9qw21w82v1l60rzpm";
+          url = "https://elpa.gnu.org/packages/modus-themes-1.5.0.tar";
+          sha256 = "0y5a7g66iiai20fvc6qff3ki792bzca87zxbmxl8hpks4a6znc80";
         };
         packageRequires = [ emacs ];
         meta = {
@@ -2889,10 +2885,10 @@
       elpaBuild {
         pname = "pyim";
         ename = "pyim";
-        version = "3.8.2";
+        version = "3.9.2";
         src = fetchurl {
-          url = "https://elpa.gnu.org/packages/pyim-3.8.2.tar";
-          sha256 = "05sgciqb0hzy07j8pvbg7h2vpa9z5z60m6pknxd3b1kpi45vaihw";
+          url = "https://elpa.gnu.org/packages/pyim-3.9.2.tar";
+          sha256 = "18m5wni1zns8fad2ll9flbfgxfy14gi03apnycajdbqxsqfp65j9";
         };
         packageRequires = [ async emacs xr ];
         meta = {
@@ -3430,10 +3426,10 @@
       elpaBuild {
         pname = "slime-volleyball";
         ename = "slime-volleyball";
-        version = "1.1.7";
+        version = "1.2.0";
         src = fetchurl {
-          url = "https://elpa.gnu.org/packages/slime-volleyball-1.1.7.tar";
-          sha256 = "0dl1x0ghfwg4vv2asz3g4plghjxpzd56fyw09vsa3s3k9xsmy3yy";
+          url = "https://elpa.gnu.org/packages/slime-volleyball-1.2.0.tar";
+          sha256 = "07xavg6xq5ckrfy5sk5k5ldb46m5w8nw1r1k006ck8f23ajaw5z2";
         };
         packageRequires = [ cl-lib ];
         meta = {
@@ -3561,16 +3557,16 @@
           license = lib.licenses.free;
         };
       }) {};
-    spinner = callPackage ({ elpaBuild, fetchurl, lib }:
+    spinner = callPackage ({ elpaBuild, emacs, fetchurl, lib }:
       elpaBuild {
         pname = "spinner";
         ename = "spinner";
-        version = "1.7.3";
+        version = "1.7.4";
         src = fetchurl {
-          url = "https://elpa.gnu.org/packages/spinner-1.7.3.el";
-          sha256 = "19kp1mmndbmw11sgvv2ggfjl4pyf5zrsbh3871f0965pw9z8vahd";
+          url = "https://elpa.gnu.org/packages/spinner-1.7.4.tar";
+          sha256 = "140kss25ijbwf8hzflbjz67ry76w2cyrh02axk95n6qcxv7jr7pv";
         };
-        packageRequires = [];
+        packageRequires = [ emacs ];
         meta = {
           homepage = "https://elpa.gnu.org/packages/spinner.html";
           license = lib.licenses.free;
@@ -3824,10 +3820,10 @@
       elpaBuild {
         pname = "transient";
         ename = "transient";
-        version = "0.3.5";
+        version = "0.3.6";
         src = fetchurl {
-          url = "https://elpa.gnu.org/packages/transient-0.3.5.tar";
-          sha256 = "15dlj21gn0zxywic9wdcp5zc8skm1s170bq7smgkpd3p3lxslf68";
+          url = "https://elpa.gnu.org/packages/transient-0.3.6.tar";
+          sha256 = "11n2551kvfjrqyk0x78bz6pirnfs126cbchiv1pchqwyk8z8c9ks";
         };
         packageRequires = [ emacs ];
         meta = {
diff --git a/pkgs/applications/editors/emacs/elisp-packages/org-generated.nix b/pkgs/applications/editors/emacs/elisp-packages/org-generated.nix
index e5f6f1aa7c9e..5d043f9de9a1 100644
--- a/pkgs/applications/editors/emacs/elisp-packages/org-generated.nix
+++ b/pkgs/applications/editors/emacs/elisp-packages/org-generated.nix
@@ -4,10 +4,10 @@
       elpaBuild {
         pname = "org";
         ename = "org";
-        version = "20210628";
+        version = "20210712";
         src = fetchurl {
-          url = "https://orgmode.org/elpa/org-20210628.tar";
-          sha256 = "1sn2yyynndk8qf43ss8bayll33r4ina8xfx4ywzcs3m1lm6xy1zl";
+          url = "https://orgmode.org/elpa/org-20210712.tar";
+          sha256 = "0xdxzfk7hvsmlyivn61ivci6hy2alxg2ysdm5xad4xxz337jrj7x";
         };
         packageRequires = [];
         meta = {
@@ -19,10 +19,10 @@
       elpaBuild {
         pname = "org-plus-contrib";
         ename = "org-plus-contrib";
-        version = "20210628";
+        version = "20210712";
         src = fetchurl {
-          url = "https://orgmode.org/elpa/org-plus-contrib-20210628.tar";
-          sha256 = "0r4kxp1hbhkwvi7939fglng8db4h4n7vigy8pd2gia3a02xcw8l5";
+          url = "https://orgmode.org/elpa/org-plus-contrib-20210712.tar";
+          sha256 = "1cdpwsfjmjplyik1r9kl4lvd5lm52zrixlfg2ml1mhh28s680k0q";
         };
         packageRequires = [];
         meta = {
diff --git a/pkgs/applications/editors/emacs/elisp-packages/recipes-archive-melpa.json b/pkgs/applications/editors/emacs/elisp-packages/recipes-archive-melpa.json
index 86d117b89561..5581a52fed47 100644
--- a/pkgs/applications/editors/emacs/elisp-packages/recipes-archive-melpa.json
+++ b/pkgs/applications/editors/emacs/elisp-packages/recipes-archive-melpa.json
@@ -25,17 +25,17 @@
  },
  {
   "ename": "0x0",
-  "commit": "982788433004ba644a372c50130613e3c56bba10",
-  "sha256": "0447s6jq57g0p5myb295930wyqk7q5qj00r8qi3l39670xsgbqdl",
-  "fetcher": "git",
-  "url": "https://git.sr.ht/~pkal/nullpointer-emacs",
+  "commit": "f725830dd12dcf466b7b1efe54b9eb3b55e5f959",
+  "sha256": "0s8q6wzzbqlpxsf9757r44lf8i8h72x4j020wmv4hvbxdvprqxq4",
+  "fetcher": "gitlab",
+  "repo": "willvaughn/emacs-0x0",
   "unstable": {
    "version": [
-    20210628,
-    1207
+    20210701,
+    839
    ],
-   "commit": "a613afa08271a75551a4d2165b4ab872b131edc0",
-   "sha256": "1ngaq8ldyv9h0g5c83y4g5z1a19z4k90dha5y4g7v3lpzmqx4jgn"
+   "commit": "63cd5eccc85e527f28e1acc89502a53245000428",
+   "sha256": "1cd0drlhi0lf1vmarcfl3vc7ldkymaj50dhqb1ajm7r0s5ps3asb"
   },
   "stable": {
    "version": [
@@ -121,6 +121,21 @@
    "sha256": "19mbfh504mli8mnf95xaych45nqnayrspymf5r80dky4jv43zzv8"
   }
  },
+ {
+  "ename": "750words",
+  "commit": "bee7108d3b0f4861ec23ab7a87ddd5fbf17952c7",
+  "sha256": "0j63ry8x617xdrffiwkwdngp6y3rik0nq2w61yf6sa097fmzpl2p",
+  "fetcher": "github",
+  "repo": "zzamboni/750words-client",
+  "unstable": {
+   "version": [
+    20210701,
+    1950
+   ],
+   "commit": "0fed7621c04debad64ea6455455494d4e6eb03fa",
+   "sha256": "1qglbfdc6526aqsba93ngw1a6hp19lqx1wlxzzy9yvggbb02mii2"
+  }
+ },
  {
   "ename": "@",
   "commit": "855ea20024b606314f8590129259747cac0bcc97",
@@ -1585,8 +1600,8 @@
   "repo": "chumpage/ack-menu",
   "unstable": {
    "version": [
-    20150504,
-    2022
+    20130107,
+    640
    ],
    "deps": [
     "mag-menu"
@@ -1936,8 +1951,8 @@
     "annotation",
     "eri"
    ],
-   "commit": "007a26fb5f7d9eb54db16484fb116d6e47c8cc5e",
-   "sha256": "1w9pra3qqmidsf5mvp0lmk9liw1ryaf8kjiawfgyyc6mzgw6nrvz"
+   "commit": "3543ef3df19228012a1ac5be766cc38fd2f65f6a",
+   "sha256": "0wlqrl8ikqc7q61i2qzmwp6h0mrv9kn5229pbsrb1ris7gxgi13b"
   },
   "stable": {
    "version": [
@@ -1979,23 +1994,20 @@
   "repo": "Malabarba/aggressive-indent-mode",
   "unstable": {
    "version": [
-    20200824,
-    2352
+    20210701,
+    2224
    ],
-   "commit": "b0ec0047aaae071ad1647159613166a253410a63",
-   "sha256": "0rz010ypy1rg8v6na05zs942ikzqg1l32inzpzqg2q2rnfa3wkx1"
+   "commit": "cb416faf61c46977c06cf9d99525b04dc109a33c",
+   "sha256": "1mlvdxs4jbxxfj57h2hc6yapgz4zzqj80k4psds116kpp0y2r5ja"
   },
   "stable": {
    "version": [
     1,
-    9,
+    10,
     0
    ],
-   "deps": [
-    "cl-lib"
-   ],
-   "commit": "d6778ae89cd2d40949aa076a43e327f7acff59c3",
-   "sha256": "0xya19w1bwpqrrqvmms0lfhqb168iv7j6kvnn49zbynnf9dhgr9w"
+   "commit": "cb416faf61c46977c06cf9d99525b04dc109a33c",
+   "sha256": "1mlvdxs4jbxxfj57h2hc6yapgz4zzqj80k4psds116kpp0y2r5ja"
   }
  },
  {
@@ -2268,11 +2280,11 @@
   "repo": "jgkamat/alda-mode",
   "unstable": {
    "version": [
-    20180608,
-    605
+    20210705,
+    654
    ],
-   "commit": "1692b9003d2c3de403251ec452c6ce43ec819c84",
-   "sha256": "0kz0b2c1np088wbmnlvznizsv8nwiidgs67cn4dz46k66g9yg3g5"
+   "commit": "4de011d572e958a377fb16daae05a1b411f0c8ad",
+   "sha256": "1x4apig2hrvvy6pjciklmz5afpq5l4rmfjahc2wvyzs79abh0icx"
   },
   "stable": {
    "version": [
@@ -2321,16 +2333,20 @@
    "deps": [
     "flycheck"
    ],
-   "commit": "bf859fdb80a46c6d0d9fd8f8540a8ae96d5c1016",
-   "sha256": "1bp3q84alqwkglifhwc5kcrb2dc22kjd3l0h9r0bh1klz70sjss4"
+   "commit": "3fad996473200fa07b0381cd66179089d10fcc6f",
+   "sha256": "0qj4cjra1kyiw8h2qm024wgy9fy3xjwik7sr1mfkhk1gbndl8m3w"
   },
   "stable": {
    "version": [
     1,
-    0
+    2,
+    1
    ],
-   "commit": "55fc849cdb7a05bbaab6f9359386d8830bdcfb87",
-   "sha256": "0v5jfmqcvridh8z7y8i5hklybfxicgmbnambi21ml34px3p9fldc"
+   "deps": [
+    "flycheck"
+   ],
+   "commit": "7b7041fd58c2b1893e4b65b18045880ecc7a1c73",
+   "sha256": "1lvhzi6fxnmpcr7xac6ri3904cqbp016ivziih3nfchdzznmzljj"
   }
  },
  {
@@ -2425,11 +2441,11 @@
   "repo": "domtronn/all-the-icons.el",
   "unstable": {
    "version": [
-    20210603,
-    1604
+    20210703,
+    2203
    ],
-   "commit": "facbde4a7be292bf9490932cbe403b443273f45d",
-   "sha256": "0lwgvgnqf7vihglm0c5bwsxbl4x7f641289cji5s7jwy2dbsqk7g"
+   "commit": "9d97c074b08000eacefc03ebc5dadbdc33888cc2",
+   "sha256": "06ya21isl47cfs4fsl8k3qzh7d27gss0snxv7mmv8a0c7rgjyx7j"
   },
   "stable": {
    "version": [
@@ -2503,8 +2519,8 @@
    "deps": [
     "all-the-icons"
    ],
-   "commit": "5a984b4d7f811e2ad08fdc461a1e89205804b7bd",
-   "sha256": "05bglgqc4q5p9zr6ylllg16crpxcnb6p51xkk5v1nljgi3n9786l"
+   "commit": "f304d283cbb815cd28b86c1cbe74b706c0678e25",
+   "sha256": "1afjcv94p8za3ri9c324j1wdg4klpcaippby3r1avwnjy5l9qpav"
   },
   "stable": {
    "version": [
@@ -2566,8 +2582,8 @@
     "all-the-icons",
     "ivy-rich"
    ],
-   "commit": "07b8c5271719afa6a4c598c2a19f4a096ca6efe8",
-   "sha256": "1blr46w08s9f3wrcarqds09is9akdsq8faghshby5fnk9s5srkq3"
+   "commit": "78ee2fb4eb43c970e12a91949f7efd26ca1834d5",
+   "sha256": "04pgr5xjk84kksck7f1y9gpvxxnsy803zq252hg1pzg1pl6bx3ga"
   },
   "stable": {
    "version": [
@@ -2633,8 +2649,8 @@
     20200723,
     1037
    ],
-   "commit": "b36c2b2bccc628da1579016381d5c3195c9e12b2",
-   "sha256": "19nqpg91in65gj59zndhncx6c1005k0wh05rprv1z6465j5gd40g"
+   "commit": "4aba676d49b0705cb4431b7e7c733ef8eac7d5aa",
+   "sha256": "1z5b5ivn81hmvndd7ari07kj1bsp9ziyxcrgf7xq21g1dfsbq8cs"
   },
   "stable": {
    "version": [
@@ -3201,8 +3217,8 @@
     20200914,
     644
    ],
-   "commit": "007a26fb5f7d9eb54db16484fb116d6e47c8cc5e",
-   "sha256": "1w9pra3qqmidsf5mvp0lmk9liw1ryaf8kjiawfgyyc6mzgw6nrvz"
+   "commit": "3543ef3df19228012a1ac5be766cc38fd2f65f6a",
+   "sha256": "0wlqrl8ikqc7q61i2qzmwp6h0mrv9kn5229pbsrb1ris7gxgi13b"
   },
   "stable": {
    "version": [
@@ -3655,8 +3671,8 @@
     20210223,
     1539
    ],
-   "commit": "a45c426b7e4a450faea004ef5b842fd37e17a7c6",
-   "sha256": "1f7bvcv4qqqa5bsfrcs69yc1phgnyrh5mbnb2hhgq72z8ymmrn7q"
+   "commit": "267a1453f58a6a6577a1d5752c876fdaa2896a6d",
+   "sha256": "0l5nfj5wz9cjpl9906w8q3p6ciwr6imf4nqh8i2s4dzip4n9w6nl"
   },
   "stable": {
    "version": [
@@ -4086,7 +4102,7 @@
   "unstable": {
    "version": [
     20210501,
-    1527
+    1536
    ],
    "commit": "9a8cd0c3d5c120bfa03187c54dba6e33f6e3ca19",
    "sha256": "1s2gdilaf38m2dg6nm4kcz5n4n455a9127pl4cbz9lg7mp3l2pg5"
@@ -4175,8 +4191,8 @@
     20201026,
     339
    ],
-   "commit": "449596a61f551ba5f8f3ff731984316e3b99faba",
-   "sha256": "0r21mxadvx4scnmx76kqnqmnvw9mx1394dvs34i5mr02nal3vhsg"
+   "commit": "375488bed4f279cf56a5c60ff236b320d3bfa169",
+   "sha256": "1kms5dkxz5ppf2iw95p4mvnkssp2iwp483mn4x0xvv53lglnjlxw"
   },
   "stable": {
    "version": [
@@ -4199,8 +4215,8 @@
     20200810,
     845
    ],
-   "commit": "79adac0149bb6083ad3a327c6bbdf56537282ee9",
-   "sha256": "1kd9fk1f3aaw0ikkbf9n6w5b2sy7v0xzsch688h8ac9rp6s2yws8"
+   "commit": "67b67de68f3d878f98c96ea7e340344aed6e6e46",
+   "sha256": "0qg04bn50s2chnwk7krdfkhq6y944fbgbwxs507qgmg4n0iyzkln"
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@@ -4482,8 +4498,8 @@
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+   "commit": "ab6f89a412ae47d257352b26f9667c3c062a7328",
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@@ -4947,22 +4963,25 @@
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+   "commit": "3425ee2eac724d1d64170a8b9d23afc18f8951a9",
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+   "deps": [
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@@ -5100,8 +5119,8 @@
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-   "sha256": "1hzh6ajccmkc2p5kcbl7vjh16rdh4nw3kmncw8ca32ij3l01rmb1"
+   "commit": "9511446c4359100d0b6433579e663852bf8f36ef",
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@@ -5305,14 +5324,11 @@
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-   "sha256": "0r99h100v43i7wr2c1jqgyzixlc1y973swwfa9cfmnaxck3ibk93"
+   "commit": "32786dc552569c7cc9970628f580b0b7b8e0b03d",
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@@ -5727,11 +5743,11 @@
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+   "commit": "7d72e6319b98b334f74b78f3d4151e92fb7dcbad",
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@@ -6078,11 +6094,11 @@
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+   "commit": "7f1db3df9bb6f4a3c9f4d3c10b9a6cf231752547",
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@@ -6296,11 +6312,11 @@
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+   "commit": "3b0a3a2200cd93497563812d4026c4d67b13e91a",
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@@ -6760,11 +6776,11 @@
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-   "sha256": "03jgfrpjlvn7fkv9grcqayphz2bjjkfh4rd6k1s7vmdpd3hm0xpb"
+   "commit": "7f328a886ba4dd01993d269eee01c8ee3d0ddf52",
+   "sha256": "1xfap2db1ncfdnv8d3vdn8gxgkzamz8vz9jsyn0jiminhy0hb2na"
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@@ -6775,11 +6791,11 @@
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-   "sha256": "0r8g5gc454mnk6jbmdx56dfjkw57003c677csb30pf15fxnxp2r4"
+   "commit": "eb389204f9dadd8a040a78e79a17732daca7e253",
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@@ -7022,14 +7038,14 @@
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-   "sha256": "0i4476gydsyandyb3r53hk8izx9jpmg03ny8f4glxcvlsm1ysvzf"
+   "commit": "f5b73bce4fcc31d55044d17949569b35dc50283b",
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@@ -7869,8 +7885,8 @@
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@@ -7879,8 +7895,8 @@
     "flycheck",
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-   "sha256": "0x1lw3cx9vx0l9xr9683p2385msny8dkp2w5l6kfa8imbyclpkp2"
+   "commit": "1e3b6a8aee9fa7c113468838c5b647080caf3703",
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@@ -8556,16 +8572,16 @@
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-   "sha256": "02l4wh4qykbk58cda8l3cyg4lpf5zjr0ss4927ac48nlxnawcrsa"
+   "commit": "25c44a39742b21122e1e2adf1f6c5828148cd3ee",
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@@ -8664,8 +8680,8 @@
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-   "sha256": "1x9vayhq5cpqglkz4bzd9iaa1p0j0qsvh5pr6vkqi2z1nrjcwi8g"
+   "commit": "a14568210e212a4dfb93898218c4df58ff204089",
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@@ -8685,18 +8701,17 @@
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-   "sha256": "1a4y3p7cwygw09b9f9j9m821aiyjiji55mrm83pvv0xzc9rhwd3h"
+   "commit": "d466eac6c4b2ee25c765e7f31e44beb38dd44e4b",
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@@ -8911,14 +8926,14 @@
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-   "sha256": "1ic6qgmcj4l7a4775wwz45qwadj4ha4z3v2qlr4s54hzzldwc9w7"
+   "commit": "a67a026db0937b26c0b7a2fcf81bf44498ad2dd1",
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@@ -9601,7 +9616,7 @@
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@@ -10154,8 +10169,8 @@
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+   "commit": "614a8d94f67cdc1eeef8371f7b6b90aef8a78158",
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@@ -10409,8 +10424,8 @@
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+   "commit": "d87317f360d64b5f68809a564d03436d2b07e96a",
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@@ -10859,6 +10874,21 @@
    "sha256": "1n01h4lwfcm0skf0pgh7p87bmk4x3r6qsr5jcgm1ldafsx35x60g"
   }
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+ {
+  "ename": "chemtable",
+  "commit": "5ffceb52fe572dec4203b6cb8f48da23a698cc06",
+  "sha256": "1s1fscgp6b8haq30fxvbxrczgzzs2sh3ggq6ib3ydyxa1vp6aggp",
+  "fetcher": "github",
+  "repo": "sergiruiztrepat/chemtable",
+  "unstable": {
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+    20210713,
+    1551
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+   "commit": "05fc1449db497e715b33b8e08359fa17c3148c7b",
+   "sha256": "16sdhias8ws93lhfhbf5hm05gff1r3imphk7gdziy51xfgyml619"
+  }
+ },
  {
   "ename": "cherry-blossom-theme",
   "commit": "401ae22f11f7ee808eb696a4c1f869cd824702c0",
@@ -11041,30 +11071,30 @@
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-   "sha256": "1x8jb65pmzw3218skqmgn95bvl5wx02yghp5wmn1gd4xdhran2qc"
+   "commit": "524ba9592fc7095209e380392915b376f75bec00",
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+   "commit": "73e6d98612187aa64f4adacd26e058349cf131c6",
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@@ -11113,20 +11143,20 @@
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-   "sha256": "1x8jb65pmzw3218skqmgn95bvl5wx02yghp5wmn1gd4xdhran2qc"
+   "commit": "524ba9592fc7095209e380392915b376f75bec00",
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-   "sha256": "0fp0p1sv7jpam2vbgkv2yg7lsdlxa02213ka06cn8rb54lw7k702"
+   "commit": "73e6d98612187aa64f4adacd26e058349cf131c6",
+   "sha256": "156hj3sxjcfpwimnrykh4n3krkbzas9jg8m6xzy42rnzhx28ja6k"
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@@ -11185,8 +11215,8 @@
   "repo": "clojure-emacs/cider",
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@@ -11197,8 +11227,8 @@
     "sesman",
     "spinner"
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-   "sha256": "0nwh1pi31jrhxjxy7q92hpis5lf1k6f6l6k5vdb0y2lfsd7acqii"
+   "commit": "fe8cf244fd3426261f9f630c981a6296afd433a4",
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@@ -11383,20 +11413,20 @@
  },
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-  "sha256": "1f54d8490gfx0r0cdvgmcjdxqpni43msy0k2mgqd1qz88a4b5l07",
+  "commit": "8229522ba39b4b542421664ad3fef76439fbbfc9",
+  "sha256": "0wzpx6qpl89zixbsqyfgmda35qbjpqyq60xm61qjzi36hf9f9wcb",
   "fetcher": "github",
-  "repo": "jorgenschaefer/circe",
+  "repo": "emacs-circe/circe",
   "unstable": {
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-   "sha256": "1l6v02aa072jvhq4b9dpkprqs14py0d4jm3xvihm05lvrbf9v6c6"
+   "commit": "07d6d82cba864b1e38d3bd46654f2e1928a997c2",
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@@ -11467,8 +11497,8 @@
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@@ -11478,8 +11508,8 @@
     "s",
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-   "sha256": "1vi62fzl3bcn24j7pvb39jdf1njrdvdvwz88qlz6l0ijaxhrv0vp"
+   "commit": "dc118772ad4585c0511f4f8f25c81faf69952038",
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@@ -11545,11 +11575,20 @@
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+   "commit": "813e8c32a41f84ff099feddb5a4d5a51c5c200b5",
+   "sha256": "02482ln1458hb6z1x89b7294q4bwwdqi08h6m0mmvgd3vz2nwmqs"
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@@ -11575,36 +11614,6 @@
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- {
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-  "commit": "696c79669478b0d1c9769cc6f0fe581ee056cf32",
-  "sha256": "13qdrvpxq928p27b1xdcbsscyhqk042rwfa17037gp9h02fd42j8",
-  "fetcher": "github",
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@@ -11636,11 +11645,11 @@
   "url": "https://git.sr.ht/~pkal/clang-capf",
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-   "sha256": "1gdd674m1vbl8acwsgx6qfmx1gr7h8a6yadzp1jjaandpmc9jlrf"
+   "commit": "258863d5cd77d2c9d07cc5dfa41b20db22a178f7",
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@@ -12188,11 +12197,11 @@
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@@ -22275,14 +22291,14 @@
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@@ -22936,11 +22952,11 @@
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@@ -23066,6 +23082,15 @@
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@@ -23188,14 +23213,14 @@
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@@ -25219,20 +25244,20 @@
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@@ -26172,15 +26197,15 @@
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@@ -26254,21 +26279,11 @@
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+   "commit": "305c532b6e59f58c4afcfb76466dbfbdc4e58b9c",
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@@ -26426,11 +26441,11 @@
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@@ -27590,8 +27605,8 @@
     "emojify",
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@@ -30165,15 +30180,15 @@
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@@ -30367,28 +30382,28 @@
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@@ -31502,15 +31517,15 @@
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+   "commit": "070abb16620653fb343980fb85a13c4d55e1070b",
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@@ -32916,14 +32931,14 @@
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@@ -33463,11 +33478,11 @@
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@@ -34178,19 +34193,19 @@
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@@ -34331,19 +34346,19 @@
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@@ -34809,8 +34824,8 @@
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@@ -50798,14 +50813,14 @@
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@@ -52346,16 +52361,16 @@
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+   "commit": "9ac07ff0adbce6a402c17e789b1750f9da0d22f4",
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@@ -52740,16 +52755,16 @@
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+   "commit": "4943a4ef8d242952ade64903a05c13094de2fbf0",
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+   "commit": "97f885a550bed05f2fbdd933718313e6645a6ea1",
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@@ -53058,6 +53073,30 @@
    "sha256": "0dd257988bdar9hl2711ch5qshx9jc11fqxcvbrd7rc1va5cshs9"
   }
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+ {
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+  "commit": "0c73a3a204ffe41f7370ef5d72a02a9e1844ce24",
+  "sha256": "0h4hfy9bw30sij5r3wgpz4sqwh343bwhd207p85kp0v10vnlk62x",
+  "fetcher": "github",
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+   "commit": "c343b2085dea11b820d4da6c6183e1102ec08698",
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@@ -54775,8 +54814,8 @@
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@@ -55452,11 +55491,14 @@
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@@ -55546,11 +55588,11 @@
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@@ -55665,11 +55707,11 @@
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@@ -55854,8 +55896,8 @@
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@@ -56136,14 +56178,14 @@
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@@ -56406,8 +56448,8 @@
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@@ -56509,16 +56551,16 @@
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@@ -56653,8 +56695,8 @@
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@@ -56747,16 +56789,16 @@
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-   "sha256": "13pray3iapy6vbd1y1y7fqcnjpsvgfz2z7j1a1awzd8ifp12g9cp"
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@@ -56774,8 +56816,8 @@
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@@ -57107,8 +57149,8 @@
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@@ -59024,8 +59066,8 @@
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@@ -60748,16 +60790,16 @@
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    "deps": [
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@@ -60789,8 +60831,8 @@
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@@ -60910,14 +60952,14 @@
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@@ -61050,8 +61092,8 @@
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@@ -61176,25 +61218,25 @@
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@@ -61620,14 +61662,14 @@
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@@ -61866,8 +61908,8 @@
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@@ -62336,8 +62378,8 @@
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@@ -62539,14 +62581,14 @@
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@@ -63740,14 +63782,14 @@
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@@ -63845,14 +63887,14 @@
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@@ -64165,8 +64207,8 @@
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@@ -64189,14 +64231,15 @@
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@@ -64274,8 +64317,8 @@
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@@ -65184,8 +65227,8 @@
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@@ -65437,28 +65480,28 @@
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@@ -65606,26 +65649,26 @@
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@@ -65903,8 +65946,8 @@
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@@ -65913,8 +65956,8 @@
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@@ -66927,11 +66970,11 @@
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@@ -67468,11 +67511,11 @@
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@@ -67500,8 +67543,8 @@
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@@ -67533,8 +67576,8 @@
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@@ -67595,8 +67638,8 @@
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+   "commit": "7c4c0a7018109b2b1bcbc3f6c1486961b223e658",
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@@ -67692,11 +67735,11 @@
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@@ -67931,11 +67974,11 @@
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@@ -68138,11 +68181,11 @@
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@@ -68928,15 +68971,15 @@
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@@ -69819,8 +69862,8 @@
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@@ -70244,16 +70287,16 @@
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@@ -70477,8 +70520,8 @@
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@@ -72114,11 +72157,14 @@
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@@ -72349,18 +72395,19 @@
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     "anaphora",
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     "json-rpc",
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@@ -72604,8 +72651,8 @@
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@@ -72711,11 +72758,11 @@
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@@ -72895,8 +72942,8 @@
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+   "commit": "ba67af28ddca8718ef8816b2b0dc1e5b2f5e9591",
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@@ -75666,14 +75713,14 @@
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@@ -75898,14 +75945,14 @@
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+   "commit": "46ca9f766322cff31279ecdf02251ff24a0e9431",
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@@ -76454,8 +76501,8 @@
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+   "commit": "479e0a1c3610dfe918d89a5f5a92c8aec37f131d",
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@@ -76786,15 +76827,15 @@
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@@ -76842,30 +76883,30 @@
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@@ -76959,14 +77000,14 @@
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+   "commit": "6c3a2fdb6c85253a32992a29edb976407bad4d77",
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@@ -77078,14 +77119,14 @@
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+   "commit": "40d40c1e6187ec9c13292beb3f7f319f189264d8",
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    "sha256": "1lxvcbpzpzs3vkgg4pif3k89ddmj5mamk2q18wc3gx0czs6v301d"
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+ {
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@@ -81214,14 +81273,14 @@
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+  "sha256": "16ajjq2if5jlc58a19nh8q9vgnp1d9zsqgzadkphc8g7g0ca3yaf",
+  "fetcher": "github",
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@@ -81618,14 +81710,14 @@
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@@ -82442,8 +82534,8 @@
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@@ -83640,14 +83732,14 @@
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@@ -84099,11 +84191,11 @@
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@@ -84196,15 +84288,15 @@
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+   "commit": "0869b152f82a76138daa53e953285936b9d558bd",
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+   "commit": "0869b152f82a76138daa53e953285936b9d558bd",
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+   "commit": "85c9349de2730b71c5796e342d67efee34faa9ed",
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@@ -87122,11 +87214,11 @@
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+   "commit": "b90ec9c242b303e90811deebaa2e3e684b63de91",
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@@ -88656,6 +88748,40 @@
    "sha256": "01gmggjv36jc8660xfpfy70cydabhymd17q3z16cjqvsxapbj7nf"
   }
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+ {
+  "ename": "pygn-mode",
+  "commit": "a6a83906ba07f4a0cd906e8345de036a7cdcc6e5",
+  "sha256": "0w7rrq02rjkm4bbk08fz0r5yaxzbgxrgglhbg2qz7arzvgq4l715",
+  "fetcher": "github",
+  "repo": "dwcoates/pygn-mode",
+  "unstable": {
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+    1304
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+   "deps": [
+    "ivy",
+    "nav-flash",
+    "uci-mode"
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+   "commit": "321c14c195cd2f8a31b9bf99dd318a552fbbcd6d",
+   "sha256": "1sz8riry4c4lf5n0nsd3msw5kch3ifwg5psrf4y866b0wlya7yk2"
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+  "stable": {
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+    1
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+   "deps": [
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+    "nav-flash",
+    "uci-mode"
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+   "commit": "cd06faecb40774fafa69d91085206810d686367a",
+   "sha256": "15hs87ly3gr8qcdfpsyyf8wadyhhij72kkj33hdqbbq9b74yr6qq"
+  }
+ },
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@@ -88664,15 +88790,15 @@
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@@ -89759,15 +89885,15 @@
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+   "commit": "c7aca6f1b4c34a48314bc7812c2d7edc849e3dba",
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@@ -89832,11 +89958,11 @@
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+   "commit": "83c4d6e77a1e25d3d2d124a4e90d5b084f3e15a5",
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@@ -90716,7 +90842,7 @@
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@@ -92013,8 +92139,8 @@
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-   "sha256": "0ksw9s96mmb1qlypz9mc9br9139ha5jmahi42x4i8qppcn6zs5ja"
+   "commit": "eaf177324482d0eadf0e97a892a156c2d503f245",
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@@ -93400,8 +93526,8 @@
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-   "sha256": "09dnlvi8kf683n6q3yp4gy9d4idiyg4x6rcij8d90cvygh8i30wd"
+   "commit": "6ca73bb3cce4d1db3c4f91efb83b63227eb712d1",
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@@ -93708,8 +93834,8 @@
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@@ -93871,8 +93997,8 @@
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+   "commit": "cff035686cc9505d114115646e4d98edac307512",
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@@ -94371,8 +94497,8 @@
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@@ -94452,8 +94578,8 @@
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+   "commit": "46eefd5b3f4a6f24b2f88c8aa18cce0abb32edb1",
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@@ -94690,11 +94816,11 @@
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    "version": [
@@ -104964,8 +105090,8 @@
   "repo": "Alexander-Miller/treemacs",
   "unstable": {
    "version": [
-    20210606,
-    1918
+    20210713,
+    2032
    ],
    "deps": [
     "ace-window",
@@ -104977,8 +105103,8 @@
     "pfuture",
     "s"
    ],
-   "commit": "2655a8976d56719add893cec45a18e018626842d",
-   "sha256": "060m6gwwvv82p7jry6viqzdf5fw6ljq4gbdkmqc5ilpkrcnmscv8"
+   "commit": "e4a85e3266581b8a8f526dbf4142c26d6e76d294",
+   "sha256": "1bjjz504a6nyh8ymqj4zbakp7b2006r0ayid5akc6yzpmyrsb4rl"
   },
   "stable": {
    "version": [
@@ -105014,8 +105140,8 @@
     "all-the-icons",
     "treemacs"
    ],
-   "commit": "2655a8976d56719add893cec45a18e018626842d",
-   "sha256": "060m6gwwvv82p7jry6viqzdf5fw6ljq4gbdkmqc5ilpkrcnmscv8"
+   "commit": "a6f9e9f1cea3502b3ead082fd208c4011a55add0",
+   "sha256": "1g004yj613x6qr06gaffb6rp2n47ximb1w8776l0s6w8d40msyyg"
   }
  },
  {
@@ -105033,8 +105159,8 @@
     "evil",
     "treemacs"
    ],
-   "commit": "2655a8976d56719add893cec45a18e018626842d",
-   "sha256": "060m6gwwvv82p7jry6viqzdf5fw6ljq4gbdkmqc5ilpkrcnmscv8"
+   "commit": "e4a85e3266581b8a8f526dbf4142c26d6e76d294",
+   "sha256": "1bjjz504a6nyh8ymqj4zbakp7b2006r0ayid5akc6yzpmyrsb4rl"
   },
   "stable": {
    "version": [
@@ -105063,8 +105189,8 @@
    "deps": [
     "treemacs"
    ],
-   "commit": "2655a8976d56719add893cec45a18e018626842d",
-   "sha256": "060m6gwwvv82p7jry6viqzdf5fw6ljq4gbdkmqc5ilpkrcnmscv8"
+   "commit": "e4a85e3266581b8a8f526dbf4142c26d6e76d294",
+   "sha256": "1bjjz504a6nyh8ymqj4zbakp7b2006r0ayid5akc6yzpmyrsb4rl"
   },
   "stable": {
    "version": [
@@ -105095,8 +105221,8 @@
     "pfuture",
     "treemacs"
    ],
-   "commit": "2655a8976d56719add893cec45a18e018626842d",
-   "sha256": "060m6gwwvv82p7jry6viqzdf5fw6ljq4gbdkmqc5ilpkrcnmscv8"
+   "commit": "e4a85e3266581b8a8f526dbf4142c26d6e76d294",
+   "sha256": "1bjjz504a6nyh8ymqj4zbakp7b2006r0ayid5akc6yzpmyrsb4rl"
   },
   "stable": {
    "version": [
@@ -105128,8 +105254,8 @@
     "persp-mode",
     "treemacs"
    ],
-   "commit": "2655a8976d56719add893cec45a18e018626842d",
-   "sha256": "060m6gwwvv82p7jry6viqzdf5fw6ljq4gbdkmqc5ilpkrcnmscv8"
+   "commit": "e4a85e3266581b8a8f526dbf4142c26d6e76d294",
+   "sha256": "1bjjz504a6nyh8ymqj4zbakp7b2006r0ayid5akc6yzpmyrsb4rl"
   },
   "stable": {
    "version": [
@@ -105161,8 +105287,8 @@
     "perspective",
     "treemacs"
    ],
-   "commit": "2655a8976d56719add893cec45a18e018626842d",
-   "sha256": "060m6gwwvv82p7jry6viqzdf5fw6ljq4gbdkmqc5ilpkrcnmscv8"
+   "commit": "a6f9e9f1cea3502b3ead082fd208c4011a55add0",
+   "sha256": "1g004yj613x6qr06gaffb6rp2n47ximb1w8776l0s6w8d40msyyg"
   }
  },
  {
@@ -105180,8 +105306,8 @@
     "projectile",
     "treemacs"
    ],
-   "commit": "2655a8976d56719add893cec45a18e018626842d",
-   "sha256": "060m6gwwvv82p7jry6viqzdf5fw6ljq4gbdkmqc5ilpkrcnmscv8"
+   "commit": "e4a85e3266581b8a8f526dbf4142c26d6e76d294",
+   "sha256": "1bjjz504a6nyh8ymqj4zbakp7b2006r0ayid5akc6yzpmyrsb4rl"
   },
   "stable": {
    "version": [
@@ -105389,15 +105515,15 @@
   "repo": "alphapapa/ts.el",
   "unstable": {
    "version": [
-    20201212,
-    1041
+    20210705,
+    341
    ],
    "deps": [
     "dash",
     "s"
    ],
-   "commit": "b7ca357a0ed57694e0b25ec1b1ca12e24a4ce541",
-   "sha256": "12p4k8x1p0h94xcdis7m0vkzf41k5k3ijkaj838ywb7i74myfdxb"
+   "commit": "b6814e7e688781a586a775ef3504b9252af65b93",
+   "sha256": "1bf39qx8k7nn1dj1fp6j47zr1lp28ccrj6ciz7z3dk040rlxnv11"
   },
   "stable": {
    "version": [
@@ -105518,14 +105644,14 @@
   "repo": "ocaml/tuareg",
   "unstable": {
    "version": [
-    20210628,
-    1257
+    20210709,
+    321
    ],
    "deps": [
     "caml"
    ],
-   "commit": "2e8482e23f45f0e6246a8d075a3b8696c5f49070",
-   "sha256": "04wblkb0jqzq67p1d96i284wfqv3ddffrwz3i3wf537wyi8bmn4k"
+   "commit": "b59c422759506402f990b089dbaa91c0578e2c2e",
+   "sha256": "1maqyhy82ayfiv95ng4bpgxrvjkkz331pw4ld1x99jpwqljpwqzc"
   },
   "stable": {
    "version": [
@@ -106159,8 +106285,8 @@
     20200719,
     618
    ],
-   "commit": "d4edb2cc110f1679ebc82cb52a4242cbc74636db",
-   "sha256": "0agn2j0qd516kxqx1bh6ajpandi8vz7zas966nw88yhv8m8hlzb2"
+   "commit": "741ab716ada8e71a94a9dae3daa4236298d29bd7",
+   "sha256": "1ibjwmvx4p7kchxlnfpqxj4p3k99nwxwhzk4m2b1yyswpiad2k0z"
   },
   "stable": {
    "version": [
@@ -107033,8 +107159,8 @@
    "deps": [
     "exec-path-from-shell"
    ],
-   "commit": "43499194224483b27628fdf99f6f9ff6e731d844",
-   "sha256": "1j6vkg0z7m8yzrgy0innq7r2d5pchbqs3y5gf51qdzsfqdmff3ys"
+   "commit": "31d8bbec16eff342bd4c02b0cb12ea31dd31bf19",
+   "sha256": "0388kwc65hpbimd53br2x9z9dvxw20wnny09kldw5nnlvzvzrba1"
   },
   "stable": {
    "version": [
@@ -107063,8 +107189,8 @@
    "deps": [
     "s"
    ],
-   "commit": "408c01423d7036463891d83e4a21227250ed2a14",
-   "sha256": "1jz7x93c14f2nm8iqc30kzfjbn5bcdvxxnfljvwj77mwgir2ali8"
+   "commit": "aa6e271e8efc3a93caaaa740245d126d24e778ab",
+   "sha256": "0a8qb7wyi5pkg7g0x7imzzxryz55dr8msiila9j9skq6jlmn84hl"
   },
   "stable": {
    "version": [
@@ -107823,8 +107949,8 @@
   "repo": "koral/veri-kompass",
   "unstable": {
    "version": [
-    20200213,
-    934
+    20181103,
+    1246
    ],
    "deps": [
     "cl-lib",
@@ -108504,8 +108630,8 @@
     20210627,
     2121
    ],
-   "commit": "bda27d3a7f11fee0550055b0552c2633c167dd96",
-   "sha256": "1y8ycsm4d72v86prg87dffis5q853k2w0fvx5vz732jryzp18lda"
+   "commit": "28398f1059f88e7e242f39cfa0ff8213cdaefc42",
+   "sha256": "0ln5idsmj7x0b769g7bj9wk0bjr826kq4bryw206dxxnz06s3wcs"
   },
   "stable": {
    "version": [
@@ -108527,8 +108653,8 @@
     20210627,
     2121
    ],
-   "commit": "a8bff6913f603a30bd98bef882ace01476c440bf",
-   "sha256": "1rshwvfggjb7amgxcl31xhll28kfbgh14aw33khlp32gq6p3vqyh"
+   "commit": "500d35f051fca07459abd163d5692c853a49329f",
+   "sha256": "1k5akiim0c0qiv10np5yzdndz8p499qhzhhrp1i8dz36gbp5x8ll"
   },
   "stable": {
    "version": [
@@ -108707,8 +108833,8 @@
   "repo": "mihaiolteanu/vuiet",
   "unstable": {
    "version": [
-    20210323,
-    911
+    20210715,
+    907
    ],
    "deps": [
     "bind-key",
@@ -108717,8 +108843,8 @@
     "s",
     "versuri"
    ],
-   "commit": "43b9364042922950f612ac57d8c526921a01b291",
-   "sha256": "14432mnm5lvccb9x3fymzi53kxfh2if92c5q14llz6pbbif8x3vh"
+   "commit": "b327a5224ab45f6689ce635878301e54ca753b3b",
+   "sha256": "1sq2nmmw8ga4jhkgb3a0mkps7v8ma1jrrz8c1vbypfn1b3amvj3b"
   },
   "stable": {
    "version": [
@@ -108840,8 +108966,8 @@
     20210615,
     103
    ],
-   "commit": "70b985b1d00c8703acb1ebf16875616903470f45",
-   "sha256": "0djvaxbxjic4m8nqmj1gs0h77gf0fik00ia7ayfha3fc7fabiif9"
+   "commit": "ccdd3681b9e7d8b6a758f2aa61a0ae8eab21240b",
+   "sha256": "1ynl1kwnhp5xqvmi8p37lprshk96xi8q78rsjmd9f8pkb8ayqbf3"
   }
  },
  {
@@ -109401,14 +109527,14 @@
   "repo": "eschulte/emacs-web-server",
   "unstable": {
    "version": [
-    20210209,
-    58
+    20210708,
+    2242
    ],
    "deps": [
     "cl-lib"
    ],
-   "commit": "3aa5084bcb733aa77997b9210b4437903f6f29ce",
-   "sha256": "1cg27byi1g0s3yfzdkji4xzc15ci5kqb2j0mj5dfdms4db12dir4"
+   "commit": "6357a1c2d1718778503f7ee0909585094117525b",
+   "sha256": "1dp4ajfd4ikqdr2lkmjijw431d3hi07izaw54fn5zw8mp9dk225y"
   }
  },
  {
@@ -109845,11 +109971,11 @@
   "repo": "justbur/emacs-which-key",
   "unstable": {
    "version": [
-    20210630,
-    1217
+    20210712,
+    1852
    ],
-   "commit": "27d9fec33abb989b030f7677ccf5f799287d6472",
-   "sha256": "1vdvp3iavh57mwhmgxwalrha7h7hgxsfnkxbrspl9x9cx7fx98f3"
+   "commit": "55fcce0c6143044535bc6825a68f42ca83f58f00",
+   "sha256": "0bap1k6rzaqvqp7njzikw8clhky1fj78mdcx4zah1y57vhszavcw"
   },
   "stable": {
    "version": [
@@ -110178,15 +110304,15 @@
   "repo": "progfolio/wikinforg",
   "unstable": {
    "version": [
-    20210615,
-    2334
+    20210711,
+    302
    ],
    "deps": [
     "org",
     "wikinfo"
    ],
-   "commit": "7df42a260fb93cb743a08e67ea92d77f62dec72b",
-   "sha256": "05qqs4b0gmnwjl6d29xns93p2lyh1x2xzl0qpydbnxjirwp2bamx"
+   "commit": "31cf4a52990caa3f928b847ec25a5412836552bd",
+   "sha256": "0l13yi9iwi68n95wmxkjrf0zsmvxadpmxc7zm8x7v8kk5p7scnil"
   }
  },
  {
@@ -110894,11 +111020,11 @@
   "repo": "istib/wordsmith-mode",
   "unstable": {
    "version": [
-    20171025,
-    1430
+    20210715,
+    1517
    ],
-   "commit": "589a97412138145bea70e0450eeddeb7f138d538",
-   "sha256": "1zm4grysjpynibldvic75awhcmmnjmlkkvslw8bvirmi58qwvwzj"
+   "commit": "5d40ceaa2b8d41ab3634ca377ceb6a74deeb2287",
+   "sha256": "132l0i94nwrm676bpxw0wnr1drqwmapwv92mf4iyb209fr4hc2w2"
   },
   "stable": {
    "version": [
@@ -110918,8 +111044,8 @@
   "repo": "abo-abo/worf",
   "unstable": {
    "version": [
-    20210504,
-    1132
+    20210702,
+    1200
    ],
    "deps": [
     "ace-link",
@@ -110927,8 +111053,8 @@
     "swiper",
     "zoutline"
    ],
-   "commit": "c99ef5478183d0ab56b0abe943206491c802e003",
-   "sha256": "1qbs5dvqcip7y77f8sdyr7zw64vgxlybj4isi7x841j4z7kh5m11"
+   "commit": "28d381e2603a79340a94a410acbbb8a6b3e237d8",
+   "sha256": "15567bns5kag47d58xapr4z0gfj5py3a8lwfpjlhmzccmarjr7x8"
   },
   "stable": {
    "version": [
@@ -111392,11 +111518,11 @@
   "repo": "xahlee/xah-fly-keys",
   "unstable": {
    "version": [
-    20210701,
-    145
+    20210715,
+    2014
    ],
-   "commit": "6465e77d57a30a0a82ca4f4756593207b2ada510",
-   "sha256": "1bzlpwxkjmzgypagdp9qj4jf6crm3yhjnr98ipr1f49dl8178j6s"
+   "commit": "95c54a896c1e4af797f0af7cf9de85426c8e11eb",
+   "sha256": "137xv47cij7a0zws8xdw140cwlsnywapyb9y51dqpmn08s1ff2l2"
   }
  },
  {
@@ -111422,11 +111548,11 @@
   "repo": "xahlee/lookup-word-on-internet",
   "unstable": {
    "version": [
-    20200420,
-    1528
+    20210708,
+    2203
    ],
-   "commit": "c97a43dc0cebbfc519d0cce5b547dcc5e22b2085",
-   "sha256": "1qkazkisgw5c9xzxqm6xzm124r1v4d4dcyazvw66nz5j2zl1i5qd"
+   "commit": "53044a43db3c803fb3e32003c3106403ecfb8e4b",
+   "sha256": "09x8lrx4sdnx2sr0nkkn19hi7x6hi3gs0ad31xmjx1qgd7bw7as9"
   }
  },
  {
@@ -112453,8 +112579,8 @@
     20210625,
     803
    ],
-   "commit": "0ddf70ec214e2b1fade0594ec44c55adb48c06da",
-   "sha256": "1mkk07j3bayzprimiq95blbyj7idl01p6jv43hh226r427c89bcs"
+   "commit": "0d7556d0936e0223003208003470a2fa28f72150",
+   "sha256": "12lz73grpvnjgki93q9aywa5p6ddw67a73dcaryv186j3maq442w"
   },
   "stable": {
    "version": [
@@ -112813,11 +112939,11 @@
   "repo": "ryuslash/yoshi-theme",
   "unstable": {
    "version": [
-    20210623,
-    544
+    20210713,
+    455
    ],
-   "commit": "4aa2a0d0c3e3b7c408d680df8cc5ede53c18e923",
-   "sha256": "0psb3ff0f0wia7vmxqhframl8vnyzk6xx3dmv1g1j7b0njk259ij"
+   "commit": "06a6bcfc58d1f1cd8815c674c9fcbbf193bba0a9",
+   "sha256": "0mp68h924hfj86rya0kvk16w82lvllmiryz8ry70ngcfmwdh930v"
   },
   "stable": {
    "version": [
@@ -113221,15 +113347,15 @@
   "repo": "EFLS/zetteldeft",
   "unstable": {
    "version": [
-    20210602,
-    841
+    20210713,
+    1855
    ],
    "deps": [
     "ace-window",
     "deft"
    ],
-   "commit": "b71f24d382887aeefde9c47fb6aa521d0ebeb806",
-   "sha256": "09wy2gllacry2n0cp52fakaa36lnd1mnbb26zysdjxh0429siy4a"
+   "commit": "7dbf608d17786a69019867fd6b2b7d6c6edf849f",
+   "sha256": "1lq80ck08bydl98ka6j4qd6m5iqd1l8cx0y8pa2wq94vj71l65vl"
   },
   "stable": {
    "version": [
@@ -113662,8 +113788,8 @@
   "repo": "egh/zotxt-emacs",
   "unstable": {
    "version": [
-    20210222,
-    347
+    20210129,
+    413
    ],
    "deps": [
     "deferred",
@@ -113710,6 +113836,30 @@
    "sha256": "1w0zh6vs7klgivq5r030a82mcfg1zwic4x3fimyiqyg5n8p67hyx"
   }
  },
+ {
+  "ename": "zoxide",
+  "commit": "77de3ff55aa7feffef7e389b4dc9a0844f82da55",
+  "sha256": "055f229a9kck8bbfwxksdi2b5v2aawjz2p8f6dar247ii1ix0jd6",
+  "fetcher": "gitlab",
+  "repo": "Vonfry/zoxide.el",
+  "unstable": {
+   "version": [
+    20210705,
+    448
+   ],
+   "commit": "f68d7cf9c8c813bdc1ec75f880e0dd1b64112f7c",
+   "sha256": "030vyh9v89ij1db1riqpzxxfgs50x0lx3isnhzbfj2dy3acmmc7s"
+  },
+  "stable": {
+   "version": [
+    1,
+    0,
+    0
+   ],
+   "commit": "f68d7cf9c8c813bdc1ec75f880e0dd1b64112f7c",
+   "sha256": "030vyh9v89ij1db1riqpzxxfgs50x0lx3isnhzbfj2dy3acmmc7s"
+  }
+ },
  {
   "ename": "zpl-mode",
   "commit": "0bf11cd6ceb2633f968134d80f37d32f91c48227",
diff --git a/pkgs/applications/networking/remote/putty/default.nix b/pkgs/applications/networking/remote/putty/default.nix
index e7544258acf1..aab30c24e207 100644
--- a/pkgs/applications/networking/remote/putty/default.nix
+++ b/pkgs/applications/networking/remote/putty/default.nix
@@ -3,7 +3,7 @@
 }:
 
 stdenv.mkDerivation rec {
-  version = "0.74";
+  version = "0.75";
   pname = "putty";
 
   src = fetchurl {
@@ -11,7 +11,7 @@ stdenv.mkDerivation rec {
       "https://the.earth.li/~sgtatham/putty/${version}/${pname}-${version}.tar.gz"
       "ftp://ftp.wayne.edu/putty/putty-website-mirror/${version}/${pname}-${version}.tar.gz"
     ];
-    sha256 = "0zc43g8ycyf712cdrja4k8ih5s3agw1k0nq0jkifdn8xwn4d7mfx";
+    sha256 = "1xgrr1fbirw79zafspg2b6crzfmlfw910y79md4r7gnxgq1kn5yk";
   };
 
   # glib-2.62 deprecations
diff --git a/pkgs/applications/science/biology/bcftools/default.nix b/pkgs/applications/science/biology/bcftools/default.nix
index 46d39c1a7ba3..d0196c0e25a5 100644
--- a/pkgs/applications/science/biology/bcftools/default.nix
+++ b/pkgs/applications/science/biology/bcftools/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "bcftools";
-  version = "1.11";
+  version = "1.13";
 
   src = fetchurl {
     url = "https://github.com/samtools/bcftools/releases/download/${version}/${pname}-${version}.tar.bz2";
-    sha256 = "0r508mp15pqzf8r1269kb4v5naw9zsvbwd3cz8s1yj7carsf9viw";
+    sha256 = "sha256-E7+h2ipe3aj6URlqR6C0r7P+8XUWRR5PDnhHfz3TC5A=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/applications/virtualization/podman/default.nix b/pkgs/applications/virtualization/podman/default.nix
index 5ab696ed1d57..227439713ed3 100644
--- a/pkgs/applications/virtualization/podman/default.nix
+++ b/pkgs/applications/virtualization/podman/default.nix
@@ -64,11 +64,9 @@ buildGoModule rec {
     installShellCompletion --fish completions/fish/*
     installShellCompletion --zsh completions/zsh/*
     MANDIR=$man/share/man make install.man-nobuild
-  '' + lib.optionalString stdenv.isLinux ''
     install -Dm644 cni/87-podman-bridge.conflist -t $out/etc/cni/net.d
     install -Dm644 contrib/tmpfile/podman.conf -t $out/lib/tmpfiles.d
     install -Dm644 contrib/systemd/system/podman.{socket,service} -t $out/lib/systemd/system
-  '' + ''
     runHook postInstall
   '';
 
diff --git a/pkgs/applications/virtualization/podman/wrapper.nix b/pkgs/applications/virtualization/podman/wrapper.nix
index c9ec18593dff..820e8ad18bcc 100644
--- a/pkgs/applications/virtualization/podman/wrapper.nix
+++ b/pkgs/applications/virtualization/podman/wrapper.nix
@@ -2,6 +2,7 @@
 , runCommand
 , makeWrapper
 , lib
+, stdenv
 , extraPackages ? []
 , podman # Docker compat
 , runc # Default container runtime
@@ -13,12 +14,14 @@
 , cni-plugins # not added to path
 , iptables
 , iproute2
+, qemu
+, xz
 }:
 
 let
   podman = podman-unwrapped;
 
-  binPath = lib.makeBinPath ([
+  binPath = lib.makeBinPath ([ ] ++ lib.optionals stdenv.isLinux [
     runc
     crun
     conmon
@@ -27,6 +30,9 @@ let
     util-linux
     iptables
     iproute2
+  ] ++ lib.optionals stdenv.isDarwin [
+    qemu
+    xz
   ] ++ extraPackages);
 
 in runCommand podman.name {
diff --git a/pkgs/build-support/fetchgit/nix-prefetch-git b/pkgs/build-support/fetchgit/nix-prefetch-git
index 661e0d674c58..8110d670e41c 100755
--- a/pkgs/build-support/fetchgit/nix-prefetch-git
+++ b/pkgs/build-support/fetchgit/nix-prefetch-git
@@ -140,7 +140,7 @@ url_to_name(){
     fi
 }
 
-# Fetch everything and checkout the right sha1
+# Fetch and checkout the right sha1
 checkout_hash(){
     local hash="$1"
     local ref="$2"
@@ -149,6 +149,7 @@ checkout_hash(){
         hash=$(hash_from_ref "$ref")
     fi
 
+    clean_git fetch ${builder:+--progress} --depth=1 origin "$hash" || \
     clean_git fetch -t ${builder:+--progress} origin || return 1
 
     local object_type=$(git cat-file -t "$hash")
diff --git a/pkgs/desktops/pantheon/apps/elementary-mail/default.nix b/pkgs/desktops/pantheon/apps/elementary-mail/default.nix
index b909f2472ad0..c990ecb24d6b 100644
--- a/pkgs/desktops/pantheon/apps/elementary-mail/default.nix
+++ b/pkgs/desktops/pantheon/apps/elementary-mail/default.nix
@@ -25,15 +25,15 @@
 
 stdenv.mkDerivation rec {
   pname = "elementary-mail";
-  version = "unstable-2021-06-21";
+  version = "6.0.0";
 
   repoName = "mail";
 
   src = fetchFromGitHub {
     owner = "elementary";
     repo = repoName;
-    rev = "c64c87fabb31dea8dc388152d5a835401993acf4";
-    sha256 = "yEUg1IbYbzOJiklnqR23X+aGVE9j4F9iH8FkmlB15x4=";
+    rev = version;
+    sha256 = "07iiipl0nsp63g5bn1y2hg6bmgj6i9cxqcfpd7q3vmldnkijvaxs";
   };
 
   passthru = {
diff --git a/pkgs/development/coq-modules/hierarchy-builder/default.nix b/pkgs/development/coq-modules/hierarchy-builder/default.nix
index dabcc44261b5..491ff959eced 100644
--- a/pkgs/development/coq-modules/hierarchy-builder/default.nix
+++ b/pkgs/development/coq-modules/hierarchy-builder/default.nix
@@ -5,9 +5,10 @@ with lib; mkCoqDerivation {
   owner = "math-comp";
   inherit version;
   defaultVersion = with versions; switch coq.coq-version [
-    { case = isGe "8.12";         out = "1.0.0"; }
+    { case = isGe "8.12";         out = "1.1.0"; }
     { case = range "8.11" "8.12"; out = "0.10.0"; }
   ] null;
+  release."1.1.0".sha256  = "sha256-spno5ty4kU4WWiOfzoqbXF8lWlNSlySWcRReR3zE/4Q=";
   release."1.0.0".sha256  = "0yykygs0z6fby6vkiaiv3azy1i9yx4rqg8xdlgkwnf2284hffzpp";
   release."0.10.0".sha256 = "1a3vry9nzavrlrdlq3cys3f8kpq3bz447q8c4c7lh2qal61wb32h";
   releaseRev = v: "v${v}";
@@ -16,11 +17,14 @@ with lib; mkCoqDerivation {
 
   propagatedBuildInputs = [ coq-elpi ];
 
+  mlPlugin = true;
+
+  installFlags = [ "DESTDIR=$(out)" "COQMF_COQLIB=lib/coq/${coq.coq-version}" ];
   extraInstallFlags = [ "VFILES=structures.v" ];
 
   meta = {
-    description = "Coq plugin embedding ELPI.";
-    maintainers = [ maintainers.cohencyril ];
-    license = licenses.lgpl21;
+    description = "High level commands to declare a hierarchy based on packed classes";
+    maintainers = with maintainers; [ cohencyril siraben ];
+    license = licenses.mit;
   };
 }
diff --git a/pkgs/development/coq-modules/math-classes/default.nix b/pkgs/development/coq-modules/math-classes/default.nix
index c5bd1098c0b4..e61019b91c67 100644
--- a/pkgs/development/coq-modules/math-classes/default.nix
+++ b/pkgs/development/coq-modules/math-classes/default.nix
@@ -4,8 +4,10 @@ with lib; mkCoqDerivation {
 
   pname = "math-classes";
   inherit version;
-  defaultVersion = if versions.range "8.6" "8.12" coq.coq-version then "8.12.0" else null;
+  defaultVersion = if versions.range "8.11" "8.13" coq.coq-version then "8.13.0" else
+                   if versions.range "8.6"  "8.10" coq.coq-version then "8.12.0" else null;
   release."8.12.0".sha256 = "14nd6a08zncrl5yg2gzk0xf4iinwq4hxnsgm4fyv07ydbkxfb425";
+  release."8.13.0".sha256 = "1ln7ziivfbxzbdvlhbvyg3v30jgblncmwcsam6gg3d1zz6r7cbby";
 
   extraBuildInputs = [ bignums ];
 
diff --git a/pkgs/development/coq-modules/mathcomp-analysis/default.nix b/pkgs/development/coq-modules/mathcomp-analysis/default.nix
index 003727c608fc..b06f057f82e4 100644
--- a/pkgs/development/coq-modules/mathcomp-analysis/default.nix
+++ b/pkgs/development/coq-modules/mathcomp-analysis/default.nix
@@ -8,6 +8,7 @@ let mca = mkCoqDerivation {
   pname = "analysis";
   owner = "math-comp";
 
+  release."0.3.9".sha256 = "sha256-uUU9diBwUqBrNRLiDc0kz0CGkwTZCUmigPwLbpDOeg4=";
   release."0.3.6".sha256 = "0g2j7b2hca4byz62ssgg90bkbc8wwp7xkb2d3225bbvihi92b4c5";
   release."0.3.4".sha256 = "18mgycjgg829dbr7ps77z6lcj03h3dchjbj5iir0pybxby7gd45c";
   release."0.3.3".sha256 = "1m2mxcngj368vbdb8mlr91hsygl430spl7lgyn9qmn3jykack867";
@@ -16,7 +17,7 @@ let mca = mkCoqDerivation {
 
   inherit version;
   defaultVersion = with versions; switch [ coq.version mathcomp.version ]  [
-      { cases = [ (range "8.11" "8.13") "1.12.0" ];             out = "0.3.6"; }
+      { cases = [ (range "8.11" "8.13") "1.12.0" ];             out = "0.3.9"; }
       { cases = [ (range "8.11" "8.13") "1.11.0" ];             out = "0.3.4"; }
       { cases = [ (range "8.10" "8.12") "1.11.0" ];             out = "0.3.3"; }
       { cases = [ (range "8.10" "8.11") "1.11.0" ];             out = "0.3.1"; }
diff --git a/pkgs/development/interpreters/ruby/default.nix b/pkgs/development/interpreters/ruby/default.nix
index 3863b97d6b17..ba132acf722f 100644
--- a/pkgs/development/interpreters/ruby/default.nix
+++ b/pkgs/development/interpreters/ruby/default.nix
@@ -12,7 +12,7 @@ let
   opString = lib.optionalString;
   patchSet = import ./rvm-patchsets.nix { inherit fetchFromGitHub; };
   config = import ./config.nix { inherit fetchFromSavannah; };
-  rubygems = import ./rubygems { inherit stdenv lib fetchurl fetchpatch; };
+  rubygems = import ./rubygems { inherit stdenv lib fetchurl; };
 
   # Contains the ruby version heuristics
   rubyVersion = import ./ruby-version.nix { inherit lib; };
diff --git a/pkgs/development/interpreters/ruby/rubygems/default.nix b/pkgs/development/interpreters/ruby/rubygems/default.nix
index cf2ca1b766ea..6f089e51221f 100644
--- a/pkgs/development/interpreters/ruby/rubygems/default.nix
+++ b/pkgs/development/interpreters/ruby/rubygems/default.nix
@@ -1,24 +1,18 @@
-{ stdenv, lib, fetchurl, fetchpatch }:
+{ stdenv, lib, fetchurl }:
 
 stdenv.mkDerivation rec {
   name = "rubygems";
-  version = "3.2.16";
+  version = "3.2.24";
 
   src = fetchurl {
     url = "https://rubygems.org/rubygems/rubygems-${version}.tgz";
-    sha256 = "1bpn45hchcbirqvqwxcxyk1xy2xkdd915jci2hfjq4y6zc4idns0";
+    sha256 = "09ff830a043y6s7390hsg3k55ffpifb1zsvs0dhz8z8pypwgiscl";
   };
 
   patches = [
     ./0001-add-post-extract-hook.patch
     ./0002-binaries-with-env-shebang.patch
     ./0003-gem-install-default-to-user.patch
-    # Ensure tmp directory are not left behind
-    # https://github.com/rubygems/rubygems/pull/4610
-    (fetchpatch {
-      url = "https://github.com/rubygems/rubygems/commit/2c2ffde6e4a9f7f571d38af687034fb8507a833d.patch";
-      sha256 = "sha256-bs2dXALKiJvMgk7lKjMx0NzGqlEqDYBBO35UrzNifms=";
-    })
   ];
 
   installPhase = ''
diff --git a/pkgs/development/python-modules/adafruit-platformdetect/default.nix b/pkgs/development/python-modules/adafruit-platformdetect/default.nix
index c3a9224410db..6f1f9b0337ea 100644
--- a/pkgs/development/python-modules/adafruit-platformdetect/default.nix
+++ b/pkgs/development/python-modules/adafruit-platformdetect/default.nix
@@ -6,12 +6,12 @@
 
 buildPythonPackage rec {
   pname = "adafruit-platformdetect";
-  version = "3.15.1";
+  version = "3.15.3";
 
   src = fetchPypi {
     pname = "Adafruit-PlatformDetect";
     inherit version;
-    sha256 = "sha256-aUYerhg5iqKsZ5SW3dI6EpFnaB7dRGjXpIDVsjwS7vY=";
+    sha256 = "sha256-cmeCh54dwYwbL1AwGrPwTDp4F6VONclV7iu2Sm1g33Q=";
   };
 
   nativeBuildInputs = [ setuptools-scm ];
diff --git a/pkgs/development/python-modules/beniget/default.nix b/pkgs/development/python-modules/beniget/default.nix
index c5508fb33032..f8733eeed626 100644
--- a/pkgs/development/python-modules/beniget/default.nix
+++ b/pkgs/development/python-modules/beniget/default.nix
@@ -6,11 +6,11 @@
 
 buildPythonPackage rec {
   pname = "beniget";
-  version = "0.3.0";
+  version = "0.4.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "062c893be9cdf87c3144fb15041cce4d81c67107c1591952cd45fdce789a0ff1";
+    sha256 = "72bbd47b1ae93690f5fb2ad3902ce1ae61dcd868ce6cfbf33e9bad71f9ed8749";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/editables/default.nix b/pkgs/development/python-modules/editables/default.nix
new file mode 100644
index 000000000000..9a3bac5abda5
--- /dev/null
+++ b/pkgs/development/python-modules/editables/default.nix
@@ -0,0 +1,28 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, pytestCheckHook
+}:
+
+buildPythonPackage rec {
+  pname = "editables";
+  version = "0.2";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "6918f16225258f24ef9800c2327e14eded42ddac344e77982380749464024f35";
+  };
+
+  checkInputs = [
+    pytestCheckHook
+  ];
+
+  # Tests not included in archive.
+  doCheck = false;
+
+  meta = {
+    description = "Editable installations";
+    homepage = https://github.com/pfmoore/editables;
+    license = lib.licenses.mit;
+  };
+}
diff --git a/pkgs/development/python-modules/gast/default.nix b/pkgs/development/python-modules/gast/default.nix
index 38334d5cc6b4..7e8d9f8d4ac5 100644
--- a/pkgs/development/python-modules/gast/default.nix
+++ b/pkgs/development/python-modules/gast/default.nix
@@ -2,10 +2,10 @@
 
 buildPythonPackage rec {
   pname = "gast";
-  version =  "0.4.0";
+  version =  "0.5.0";
   src = fetchPypi {
     inherit pname version;
-    sha256 = "40feb7b8b8434785585ab224d1568b857edb18297e5a3047f1ba012bc83b42c1";
+    sha256 = "8109cbe7aa0f7bf7e4348379da05b8137ea1f059f073332c3c1cedd57db8541f";
   };
   checkInputs = [ astunparse ] ;
   meta = with lib; {
diff --git a/pkgs/development/python-modules/mesonpep517/default.nix b/pkgs/development/python-modules/mesonpep517/default.nix
index fd44f3e4480e..8805c2039034 100644
--- a/pkgs/development/python-modules/mesonpep517/default.nix
+++ b/pkgs/development/python-modules/mesonpep517/default.nix
@@ -4,7 +4,7 @@
 , meson
 , ninja
 , intreehooks
-, pytoml
+, toml
 , pythonOlder
 }:
 
@@ -12,17 +12,15 @@
 
 buildPythonPackage rec {
   pname = "mesonpep517";
-  version = "0.1.9999994";
+  version = "0.2";
   format = "pyproject";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "b5bcca61024164c4a51d29e6921ea1f756d54197c8f052e4c66a2b8399aa9349";
+    sha256 = "sha256-Fyo7JfLqHJqbahEjVDt/0xJxOfVLqLn3xNJ4lSB7KIw=";
   };
 
-  nativeBuildInputs = [ intreehooks  ];
-
-  propagatedBuildInputs = [ pytoml ];
+  propagatedBuildInputs = [ toml ];
 
   # postPatch = ''
   #   # Meson tries to detect ninja as well, so we should patch meson as well.
diff --git a/pkgs/development/python-modules/pync/default.nix b/pkgs/development/python-modules/pync/default.nix
index 0eb13c732d7e..f01bfa33186c 100644
--- a/pkgs/development/python-modules/pync/default.nix
+++ b/pkgs/development/python-modules/pync/default.nix
@@ -1,22 +1,23 @@
 { lib, stdenv
 , buildPythonPackage
 , fetchPypi
-, isPy27
 , python-dateutil
 , pkgs
+, coreutils
+, which
 }:
 
 buildPythonPackage rec {
   version  = "2.0.3";
   pname = "pync";
-  disabled = ! isPy27;
 
   src = fetchPypi {
     inherit pname version;
     sha256 = "38b9e61735a3161f9211a5773c5f5ea698f36af4ff7f77fa03e8d1ff0caa117f";
   };
 
-  buildInputs = [ pkgs.coreutils ];
+  nativeBuildInputs = [ coreutils ];
+  checkInputs = [ which ];
   propagatedBuildInputs = [ python-dateutil ];
 
   preInstall = lib.optionalString stdenv.isDarwin ''
@@ -25,7 +26,7 @@ buildPythonPackage rec {
 
   meta = with lib; {
     description = "Python Wrapper for Mac OS 10.8 Notification Center";
-    homepage    = "https://pypi.python.org/pypi/pync/1.4";
+    homepage    = "https://pypi.python.org/pypi/pync";
     license     = licenses.mit;
     platforms   = platforms.darwin;
     maintainers = with maintainers; [ lovek323 ];
diff --git a/pkgs/development/python-modules/pythran/0001-hardcode-path-to-libgomp.patch b/pkgs/development/python-modules/pythran/0001-hardcode-path-to-libgomp.patch
new file mode 100644
index 000000000000..14d2c2fbfd29
--- /dev/null
+++ b/pkgs/development/python-modules/pythran/0001-hardcode-path-to-libgomp.patch
@@ -0,0 +1,64 @@
+From 208fe98f10c580a5a2fb6a8cfdd56de109073925 Mon Sep 17 00:00:00 2001
+From: Frederik Rietdijk <fridh@fridh.nl>
+Date: Sat, 17 Jul 2021 18:36:27 +0200
+Subject: [PATCH] hardcode path to libgomp
+
+---
+ omp/__init__.py | 40 ++++------------------------------------
+ 1 file changed, 4 insertions(+), 36 deletions(-)
+
+diff --git a/omp/__init__.py b/omp/__init__.py
+index bddae3063..9ba3678d8 100644
+--- a/omp/__init__.py
++++ b/omp/__init__.py
+@@ -69,43 +69,11 @@ class OpenMP(object):
+ 
+     def init_not_msvc(self):
+         """ Find OpenMP library and try to load if using ctype interface. """
+-        # find_library() does not search automatically LD_LIBRARY_PATH
+-        paths = os.environ.get('LD_LIBRARY_PATH', '').split(':')
++        libgomp_path = "@gomp@"
+ 
+-        for libomp_name in self.get_libomp_names():
+-            if cxx is None or sys.platform == 'win32':
+-                # Note: Clang supports -print-file-name, but not yet for
+-                # clang-cl as of v12.0.0 (April '21)
+-                continue
+-
+-            cmd = [cxx, '-print-file-name=' + libomp_name]
+-            # the subprocess can fail in various ways in that case just give up
+-            try:
+-                path = os.path.dirname(check_output(cmd).decode().strip())
+-                if path:
+-                    paths.append(path)
+-            except (OSError, CalledProcessError):
+-                pass
+-
+-        # Try to load find libgomp shared library using loader search dirs
+-        libgomp_path = find_library("gomp")
+-
+-        # Try to use custom paths if lookup failed
+-        for path in paths:
+-            if libgomp_path:
+-                break
+-            path = path.strip()
+-            if os.path.isdir(path):
+-                libgomp_path = find_library(os.path.join(str(path), "libgomp"))
+-
+-        if not libgomp_path:
+-            raise ImportError("I can't find a shared library for libgomp,"
+-                              " you may need to install it or adjust the "
+-                              "LD_LIBRARY_PATH environment variable.")
+-        else:
+-            # Load the library (shouldn't fail with an absolute path right?)
+-            self.libomp = ctypes.CDLL(libgomp_path)
+-            self.version = 45
++        # Load the library (shouldn't fail with an absolute path right?)
++        self.libomp = ctypes.CDLL(libgomp_path)
++        self.version = 45
+ 
+     def __getattr__(self, name):
+         """
+-- 
+2.32.0
+
diff --git a/pkgs/development/python-modules/pythran/default.nix b/pkgs/development/python-modules/pythran/default.nix
index 864234a37e27..10dc9f305724 100644
--- a/pkgs/development/python-modules/pythran/default.nix
+++ b/pkgs/development/python-modules/pythran/default.nix
@@ -1,4 +1,5 @@
 { lib
+, python
 , buildPythonPackage
 , fetchFromGitHub
 , pytestrunner
@@ -12,19 +13,31 @@
 , pytestCheckHook
 , scipy
 , isPy3k
+, substituteAll
 }:
 
-buildPythonPackage rec {
+let
+  inherit (python) stdenv;
+
+in buildPythonPackage rec {
   pname = "pythran";
-  version = "0.9.8post3";
+  version = "0.9.12";
 
   src = fetchFromGitHub {
     owner = "serge-sans-paille";
     repo = "pythran";
     rev = version;
-    sha256 = "sha256-GCWjJlf7zpFzELR6wTF8FoJzJ3F/WdT1hHjY5A5h/+4=";
+    sha256 = "sha256-lQbVq4K/Q8RzlFhE+l3HPCmUGmauXawcKe31kfbUHsI=";
   };
 
+  patches = [
+    # Hardcode path to mp library
+    (substituteAll {
+      src = ./0001-hardcode-path-to-libgomp.patch;
+      gomp = "${stdenv.cc.cc.lib}/lib/libgomp${stdenv.hostPlatform.extensions.sharedLibrary}";
+    })
+  ];
+
   nativeBuildInputs = [
     pytestrunner
   ];
@@ -62,7 +75,7 @@ buildPythonPackage rec {
 
   meta = {
     description = "Ahead of Time compiler for numeric kernels";
-    homepage = https://github.com/serge-sans-paille/pythran;
+    homepage = "https://github.com/serge-sans-paille/pythran";
     license = lib.licenses.bsd3;
   };
 
diff --git a/pkgs/development/ruby-modules/gem/default.nix b/pkgs/development/ruby-modules/gem/default.nix
index c8dba5142082..7ba8c70a9805 100644
--- a/pkgs/development/ruby-modules/gem/default.nix
+++ b/pkgs/development/ruby-modules/gem/default.nix
@@ -242,7 +242,10 @@ stdenv.mkDerivation ((builtins.removeAttrs attrs ["source"]) // {
   propagatedUserEnvPkgs = gemPath ++ propagatedUserEnvPkgs;
 
   passthru = passthru // { isRubyGem = true; };
-  inherit meta;
+  meta = {
+    # default to Ruby's platforms
+    platforms = ruby.meta.platforms;
+  } // meta;
 })
 
 )
diff --git a/pkgs/development/tools/buildah/default.nix b/pkgs/development/tools/buildah/default.nix
index ba6f0bf652e3..13ae74db9774 100644
--- a/pkgs/development/tools/buildah/default.nix
+++ b/pkgs/development/tools/buildah/default.nix
@@ -14,13 +14,13 @@
 
 buildGoModule rec {
   pname = "buildah";
-  version = "1.21.2";
+  version = "1.21.3";
 
   src = fetchFromGitHub {
     owner = "containers";
     repo = "buildah";
     rev = "v${version}";
-    sha256 = "sha256-9AYFC10AYbt/qHj5hfuLRxUwibizKk4n9rgtd5RBEQg=";
+    sha256 = "sha256-f39UXQXUje6j8bRWVaX9ELCwO1vaeNuGnlmPhyyVoV8=";
   };
 
   outputs = [ "out" "man" ];
diff --git a/pkgs/development/tools/pscale/default.nix b/pkgs/development/tools/pscale/default.nix
index 701c22471ee4..14518939dcd9 100644
--- a/pkgs/development/tools/pscale/default.nix
+++ b/pkgs/development/tools/pscale/default.nix
@@ -2,16 +2,16 @@
 
 buildGoModule rec {
   pname = "pscale";
-  version = "0.51.0";
+  version = "0.58.0";
 
   src = fetchFromGitHub {
     owner = "planetscale";
     repo = "cli";
     rev = "v${version}";
-    sha256 = "sha256-ykHwDVwL30uXeCEP4EcM8TPYqZmCDDAUUpfinpYipHE=";
+    sha256 = "sha256-9XVvdAt/TWQdCY8s//QHZC6THFAf+pMYQpjHjUR3wrc=";
   };
 
-  vendorSha256 = "sha256-3VP2fluQLZs4nWT3O6NmCFxrqKw0/j3ASNxtbXHlZEA=";
+  vendorSha256 = "sha256-m6eQ843aP68TO4W5Nq4zKqcf2wgdH/7Srzt37t/NSdk=";
 
   meta = with lib; {
     homepage = "https://www.planetscale.com/";
diff --git a/pkgs/os-specific/linux/lxc/default.nix b/pkgs/os-specific/linux/lxc/default.nix
index bad7622771aa..e10af3abf923 100644
--- a/pkgs/os-specific/linux/lxc/default.nix
+++ b/pkgs/os-specific/linux/lxc/default.nix
@@ -9,11 +9,11 @@
 with lib;
 stdenv.mkDerivation rec {
   pname = "lxc";
-  version = "4.0.9";
+  version = "4.0.10";
 
   src = fetchurl {
     url = "https://linuxcontainers.org/downloads/lxc/lxc-${version}.tar.gz";
-    sha256 = "0az56xpvhqiwmf9wfxzaz89s5idrgd9ynd13psscw3hlx480dkqz";
+    sha256 = "1sgsic9dzj3wv2k5bx2vhcgappivhp1glkqfc2yrgr6jas052351";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/servers/http/openresty/default.nix b/pkgs/servers/http/openresty/default.nix
index 964517649900..71490b342805 100644
--- a/pkgs/servers/http/openresty/default.nix
+++ b/pkgs/servers/http/openresty/default.nix
@@ -9,11 +9,11 @@
 callPackage ../nginx/generic.nix args rec {
   pname = "openresty";
   nginxVersion = "1.19.3";
-  version = "${nginxVersion}.1";
+  version = "${nginxVersion}.2";
 
   src = fetchurl {
     url = "https://openresty.org/download/openresty-${version}.tar.gz";
-    sha256 = "0p9xn0xgbk6nmjfb25a3d6bwxm8q23igkixqma5fpygla6fcsvzk";
+    sha256 = "1fav3qykckqcyw9ksi8s61prpwab44zbcvj95rwfpfqgk5jffh6f";
   };
 
   # generic.nix applies fixPatch on top of every patch defined there.  This
@@ -44,7 +44,7 @@ callPackage ../nginx/generic.nix args rec {
 
   meta = {
     description = "A fast web application server built on Nginx";
-    homepage = "http://openresty.org";
+    homepage = "https://openresty.org";
     license = lib.licenses.bsd2;
     platforms = lib.platforms.all;
     maintainers = with lib.maintainers; [ thoughtpolice lblasc emily ];
diff --git a/pkgs/test/texlive/default.nix b/pkgs/test/texlive/default.nix
index caeca4ae00c6..2444334f5268 100644
--- a/pkgs/test/texlive/default.nix
+++ b/pkgs/test/texlive/default.nix
@@ -152,4 +152,16 @@
         | tee "$out/scheme-infraonly/$fname.patch"
     done
   '';
+
+  # test that fmtutil.cnf is fully regenerated on scheme-full
+  fmtutilCnf = runCommandNoCC "texlive-test-fmtutil.cnf" {
+    kpathsea = lib.head texlive.kpathsea.pkgs;
+    schemeFull = texlive.combined.scheme-full;
+  } ''
+    mkdir -p "$out"
+
+    diff --ignore-matching-lines='^# Generated by ' -u \
+      {"$kpathsea","$schemeFull"/share/texmf}/web2c/fmtutil.cnf \
+      | tee "$out/fmtutil.cnf.patch"
+  '';
 }
diff --git a/pkgs/tools/graphics/oxipng/default.nix b/pkgs/tools/graphics/oxipng/default.nix
index edffad57963e..eab3996811ef 100644
--- a/pkgs/tools/graphics/oxipng/default.nix
+++ b/pkgs/tools/graphics/oxipng/default.nix
@@ -1,15 +1,15 @@
 { lib, stdenv, fetchCrate, rustPlatform }:
 
 rustPlatform.buildRustPackage rec {
-  version = "4.0.3";
+  version = "5.0.0";
   pname = "oxipng";
 
   src = fetchCrate {
     inherit version pname;
-    sha256 = "sha256-lvVgoAZMIqmbS6yMul9Hf9PtneEVy+jDs3kU1jSBL2w=";
+    sha256 = "sha256-rTAY+3ViPkOsRjT9FHKnVOEGfLscuBdMAiQq+N9PRNU=";
   };
 
-  cargoSha256 = "sha256-sxvOFxSZCANBa/448SpjoLqk/HjqtaFrOhjrQro446Q=";
+  cargoSha256 = "sha256-Z5tA2bUE/5qGKXP2hIKo6tBegaSUALRzEZ/Xext3EWY=";
 
   doCheck = !stdenv.isAarch64 && !stdenv.isDarwin;
 
diff --git a/pkgs/tools/networking/siege/default.nix b/pkgs/tools/networking/siege/default.nix
index 3a7e64623afd..175595edafb8 100644
--- a/pkgs/tools/networking/siege/default.nix
+++ b/pkgs/tools/networking/siege/default.nix
@@ -7,11 +7,11 @@
 
 stdenv.mkDerivation rec {
   pname = "siege";
-  version = "4.0.9";
+  version = "4.1.1";
 
   src = fetchurl {
     url = "http://download.joedog.org/siege/${pname}-${version}.tar.gz";
-    sha256 = "0xzjfljhv9wcf58qw2c1sbpa5nqz1pb6rjpgvz7bxrv90n31bghx";
+    sha256 = "1a74py0ib1gr3znv9ah5acw67ngl08b14dbc90ww9clvgdr2ag0l";
   };
 
   NIX_LDFLAGS = lib.optionalString stdenv.isLinux "-lgcc_s";
diff --git a/pkgs/tools/security/exploitdb/default.nix b/pkgs/tools/security/exploitdb/default.nix
index 8a482430855d..ba4844d9ed18 100644
--- a/pkgs/tools/security/exploitdb/default.nix
+++ b/pkgs/tools/security/exploitdb/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "exploitdb";
-  version = "2021-07-15";
+  version = "2021-07-17";
 
   src = fetchFromGitHub {
     owner = "offensive-security";
     repo = pname;
     rev = version;
-    sha256 = "sha256-WqLKdvJh22j9lwoO1iFIhjPCReeR4TQ91zqkVV/PN14=";
+    sha256 = "sha256-33Jv6sGJDguXOn2iiq3KpEPe4+LexDwwcY6P8AWbpVg=";
   };
 
   installPhase = ''
diff --git a/pkgs/tools/security/vulnix/default.nix b/pkgs/tools/security/vulnix/default.nix
index a7ce0fb4b6e4..d49c1e925dc1 100644
--- a/pkgs/tools/security/vulnix/default.nix
+++ b/pkgs/tools/security/vulnix/default.nix
@@ -6,11 +6,11 @@
 
 python3Packages.buildPythonApplication rec {
   pname = "vulnix";
-  version = "1.9.6";
+  version = "1.10.0";
 
   src = python3Packages.fetchPypi {
     inherit pname version;
-    sha256 = "0anyxmqgn4kx102l3qjhh1f2b0cg7mnlapfhriyjw0zyy5gyqvng";
+    sha256 = "1d5mqpc4g1wkqcwxp8m9k130i3ii3q7n1n4b1fyb5wijidmyn3xv";
   };
 
   outputs = [ "out" "doc" "man" ];
diff --git a/pkgs/tools/typesetting/tex/texlive/combine.nix b/pkgs/tools/typesetting/tex/texlive/combine.nix
index c503a1fd82a2..1367d651a091 100644
--- a/pkgs/tools/typesetting/tex/texlive/combine.nix
+++ b/pkgs/tools/typesetting/tex/texlive/combine.nix
@@ -121,10 +121,12 @@ in (buildEnv {
       mkdir $out/share/texmf-local
     )
   '' +
-    # now filter hyphenation patterns, in a hacky way ATM
+    # now filter hyphenation patterns and formats
   (let
     hyphens = lib.filter (p: p.hasHyphens or false && p.tlType == "run") pkgList.splitBin.wrong;
-    pnames = uniqueStrings (map (p: p.pname) hyphens);
+    hyphenPNames = uniqueStrings (map (p: p.pname) hyphens);
+    formats = lib.filter (p: p.hasFormats or false && p.tlType == "run") pkgList.splitBin.wrong;
+    formatPNames = uniqueStrings (map (p: p.pname) formats);
     # sed expression that prints the lines in /start/,/end/ except for /end/
     section = start: end: "/${start}/,/${end}/{ /${start}/p; /${end}/!p; };\n";
     script =
@@ -134,7 +136,7 @@ in (buildEnv {
         # pick up the header
         + "2,/^% from/{ /^% from/!p; };\n"
         # pick up all sections matching packages that we combine
-        + lib.concatMapStrings (pname: section "^% from ${pname}:$" "^% from|^%%% No changes may be made beyond this point.$") pnames
+        + lib.concatMapStrings (pname: section "^% from ${pname}:$" "^% from|^%%% No changes may be made beyond this point.$") hyphenPNames
         # pick up the footer (for language.def)
         + "/^%%% No changes may be made beyond this point.$/,$p;\n"
       );
@@ -142,9 +144,15 @@ in (buildEnv {
       writeText "hyphens.lua.sed" (
         "1{ s/^(-- Generated by .*)$/\\1, modified by texlive.combine/; p; }\n"
         + "2,/^-- END of language.us.lua/p;\n"
-        + lib.concatMapStrings (pname: section "^-- from ${pname}:$" "^}$|^-- from") pnames
+        + lib.concatMapStrings (pname: section "^-- from ${pname}:$" "^}$|^-- from") hyphenPNames
         + "$p;\n"
       );
+    fmtutilSed =
+      writeText "fmtutil.sed" (
+        "1{ s/^(# Generated by .*)$/\\1, modified by texlive.combine/; p; }\n"
+        + "2,/^# from/{ /^# from/!p; };\n"
+        + lib.concatMapStrings (pname: section "^# from ${pname}:$" "^# from") formatPNames
+      );
   in ''
     (
       cd ./share/texmf/tex/generic/config/
@@ -153,6 +161,10 @@ in (buildEnv {
       done
       [[ -e language.dat.lua ]] && sed -E -n -f '${scriptLua}' -i language.dat.lua
     )
+    (
+      cd ./share/texmf/web2c/
+      [[ -e fmtutil.cnf ]] && sed -E -n -f '${fmtutilSed}' -i fmtutil.cnf
+    )
   '') +
 
   # function to wrap created executables with required env vars
@@ -213,7 +225,7 @@ in (buildEnv {
 
     perl `type -P mktexlsr.pl` ./share/texmf
     ${bin.texlinks} "$out/bin" && wrapBin
-    (perl `type -P fmtutil.pl` --sys --all || true) | grep '^fmtutil' # too verbose
+    perl `type -P fmtutil.pl` --sys --all | grep '^fmtutil' # too verbose
     #${bin.texlinks} "$out/bin" && wrapBin # do we need to regenerate format links?
 
     # Disable unavailable map files
diff --git a/pkgs/tools/typesetting/tex/texlive/default.nix b/pkgs/tools/typesetting/tex/texlive/default.nix
index 386e0d8d3bef..4497cdfbed26 100644
--- a/pkgs/tools/typesetting/tex/texlive/default.nix
+++ b/pkgs/tools/typesetting/tex/texlive/default.nix
@@ -109,10 +109,11 @@ let
       pkgs =
         # tarball of a collection/scheme itself only contains a tlobj file
         [( if (attrs.hasRunfiles or false) then mkPkgV "run"
-            # the fake derivations are used for filtering of hyphenation patterns
+            # the fake derivations are used for filtering of hyphenation patterns and formats
           else {
             inherit pname version;
             tlType = "run";
+            hasFormats = attrs.hasFormats or false;
             hasHyphens = attrs.hasHyphens or false;
           }
         )]
@@ -171,6 +172,7 @@ let
           # metadata for texlive.combine
           passthru = {
             inherit pname tlType version;
+            hasFormats = args.hasFormats or false;
             hasHyphens = args.hasHyphens or false;
           };
         } // lib.optionalAttrs (fixedHash != null) {
diff --git a/pkgs/tools/typesetting/tex/texlive/pkgs.nix b/pkgs/tools/typesetting/tex/texlive/pkgs.nix
index ea9a11b8a335..a42b384803ac 100644
--- a/pkgs/tools/typesetting/tex/texlive/pkgs.nix
+++ b/pkgs/tools/typesetting/tex/texlive/pkgs.nix
@@ -584,6 +584,7 @@ tl: { # no indentation
   deps."lambda" = tl."lambda";
   deps."latex" = tl."latex";
   deps."plain" = tl."plain";
+  hasFormats = true;
   sha512.run = "7d9241eab3e1e34f8c1aef85c4f2278680cd147cc4f188194c8c27147df3b9bf2a3bee7c651227aac79996e0745124990950ddc010a4f6662fda4a2f72575211";
   sha512.doc = "87de188abf9880f2e680d6582cfb20d8166eb0c3ed2d3a85971eeac6ba8abea2d7f46b8037c26b719c1289f778d4e94ae1813598e73f8f56f6224e3299852cf6";
 };
@@ -862,6 +863,7 @@ tl: { # no indentation
   deps."knuth-lib" = tl."knuth-lib";
   deps."plain" = tl."plain";
   deps."tex" = tl."tex";
+  hasFormats = true;
   sha512.run = "d52e4a817f839c95b7718c65b6cba571443f9f25533a9c7412a69b3f15c89e995494ed812ead2ddac9f0952e0e842216a7fd443ecf2360f50a36107241397c19";
   sha512.doc = "ed91ca4af98a72f081aa021b598ed58888150a73346d5d8da9ef7171f7d757c6d690169e1eb4b3e409ed8b988b8ffff9475f35ca7a443074080c1c9568ebaa0d";
   hasRunfiles = true;
@@ -10423,6 +10425,7 @@ tl: { # no indentation
   deps."pdftex" = tl."pdftex";
   deps."stmaryrd" = tl."stmaryrd";
   deps."xetex" = tl."xetex";
+  hasFormats = true;
   sha512.run = "61fcc778837ecff88bb0e80e39e2acb3ee64e2c26e4069f7634e5dc6c74dc93caab78e4b0088ed58f494d6dcd3a5084bc55cd471baaeb292dc208cf2a241bf69";
   sha512.doc = "ee4458cd6d45a41652ae24b3b82bea5cfa2d8b9c14cf4ba1357f9f07d6572f8ba83e350b74659c471ebf5068f33f5c5762a11669ab2a4f5adb3db41f392956dd";
   hasRunfiles = true;
@@ -11077,6 +11080,7 @@ tl: { # no indentation
   deps."latex-fonts" = tl."latex-fonts";
   deps."tex-ini-files" = tl."tex-ini-files";
   deps."unicode-data" = tl."unicode-data";
+  hasFormats = true;
   sha512.run = "dd6b98eb22786f39c830a4c012396507dca694d727f1a7eb147a1c8c2d4442d8120e016de4c08c038239dfac866f828bc7686d8fd124d1af63edd0994db80f9f";
   sha512.doc = "8ec3527c25c07641788b809cca4f4cc8bb034f63f1100b74270041b503dbc8926a410429a370692502596bd6ffec69a970a19b1c32178e4722f81acdbf0ea934";
   sha512.source = "0563f453bf7e34b4948a29d832207f8148082c5186a6915a6bdc1c41d0c08399505491ccdea0b45e8bf326a8e8459d37eeaca546143d9f622ce4dacba11cac7f";
@@ -11094,6 +11098,7 @@ tl: { # no indentation
   deps."plain" = tl."plain";
   deps."tex" = tl."tex";
   deps."tex-ini-files" = tl."tex-ini-files";
+  hasFormats = true;
   sha512.run = "27fc3fbb1aa29693fcd1d39abf92e3248fa769b8c4e0171948c2a7957e52dad2e08759050321401f7cb900285de62246bc0013d22141281111a82681c11802e4";
   hasRunfiles = true;
   version = "Mar._2021";
@@ -13810,6 +13815,7 @@ tl: { # no indentation
   deps."plain" = tl."plain";
   deps."tex-ini-files" = tl."tex-ini-files";
   deps."unicode-data" = tl."unicode-data";
+  hasFormats = true;
   sha512.run = "a5b93a081e9b2201a65bf7e7fb01381480f5c1f31aafaa78c5785981d895a384f1f8db1d474db845c06cd0850cf70ec4bec0e3935b67fe506b8b07512ee97479";
   sha512.doc = "44d804287cdd427043f766ea9f5f352d93d65f941b3e18727dfc9276fc381f51fccb3a025707f24dca5efd59cccd1a340e5de0d452d928ec0296b4faa46abf67";
   sha512.source = "8edb47575e32de1d7947bc2b7e1e354eeafe287cce6b4c7bafa1266d9d7c1bd4c8df363ecb4c17da9eb35cfc1e3393e2297ae6d90f9f4aa8147b4467e2ae1c89";
@@ -19379,6 +19385,7 @@ tl: { # no indentation
   deps."url" = tl."url";
   deps."wasysym" = tl."wasysym";
   deps."zapfding" = tl."zapfding";
+  hasFormats = true;
   sha512.run = "985e1ed14e5db0a23e9be510e5a52456fdf07ff8c8746add0d1123fa8b8684b3a0c5d9e99e06aa193c667ffa2dd648419d4359a75685d6514e81b9ef0d92ff22";
   sha512.doc = "bf83fb4dc700f10050d34905197a630f8de75a6a27146188efc254b831ad0d68cc873b610f7457a3dc1140a10793aa05c567749efc38225089014df99fc2c895";
   sha512.source = "63bf7f94983a971833e1e1b7d33afdf684d83117e4ce846334952176641b45acfe0c18b2fe983c2f24d98e68e91469560c2c10582d53015d069802a38066280f";
@@ -20306,6 +20313,7 @@ tl: { # no indentation
   deps."pdftex" = tl."pdftex";
   deps."tex-ini-files" = tl."tex-ini-files";
   deps."unicode-data" = tl."unicode-data";
+  hasFormats = true;
   sha512.run = "b349e8fad2765c4a87b471532dcfafedc0a9711237c6e967011727da7bad3a5ed27a89eca81af324aa84958872d0b78c68e6d9490fced44eb7636b2fbf36611f";
   sha512.doc = "7cfb465f4db5089e7fa41762a0437f5f51445efdb9aba5d676dc5933e0fbcfbe0fda31baf83e20f2d16e6a7a0019c71752af8744d02ad12636adb9afb8cb3041";
 };
@@ -20336,6 +20344,7 @@ tl: { # no indentation
   deps."pdftex" = tl."pdftex";
   deps."tex-ini-files" = tl."tex-ini-files";
   deps."unicode-data" = tl."unicode-data";
+  hasFormats = true;
   sha512.run = "31c364be709db593c1a1d4e5250a7d8899fe0f5eb534c61c5f67d1a032b4afca9a91c5d2d1a541e96045d294c87d7ca1758a6a59bce8a3e94bf5511e20cf8854";
   sha512.doc = "94474a52fb6a2bb801405c83562d6dd69038cca8d73705f382c2acc6c63d57e057a6b6c1b93556e41f5d0d9f9adfa269f0857c35e6523108eb230985752c3261";
 };
@@ -21427,6 +21436,7 @@ tl: { # no indentation
   revision = 45678;
   deps."cm" = tl."cm";
   deps."hyphen-base" = tl."hyphen-base";
+  hasFormats = true;
   sha512.run = "81557b83acfa4ad42dfa6fb1a65ea42bc33885da444ee23bc3c67a899df7b3ac2c19a1607305b5ec10b503980365c5d29ac3598339fc186a05417ea5bca60a78";
   sha512.doc = "206dee2be733e3ac04b5b259862b60fb3641fc44ea182da601ca54a010ff8e42f254dd01c03be7bcdd2a6258110c567a596ee82b4eb74d04ca8ed70e50cd6a86";
   hasRunfiles = true;
@@ -21924,6 +21934,7 @@ tl: { # no indentation
   deps."plain" = tl."plain";
   deps."tex-ini-files" = tl."tex-ini-files";
   deps."unicode-data" = tl."unicode-data";
+  hasFormats = true;
   sha512.run = "bb198606ca33912f75327b0799061a81aeb9e2315182001710929d5a7c786fc11b58a5eadcc186f2db21df01777904ada31058c0a03376c04020b213d9f7c519";
   sha512.doc = "9b7c72ad24d459b345552ee8ae05c047c61cf3e0b6eabb927e2a02bf62558f143e937463574bdb0cc60a0a4c8b2da3f86b1d9361275142519044051039275f1c";
 };
@@ -21979,6 +21990,7 @@ tl: { # no indentation
   deps."plain" = tl."plain";
   deps."tex-ini-files" = tl."tex-ini-files";
   deps."unicode-data" = tl."unicode-data";
+  hasFormats = true;
   sha512.run = "01777af9a468b6216417c5158034c3dea3cfb1c3ca7d28f1c4ca2b239fe569fbde410d17662bf9a10f5fddfd1bb6541c505d772e705832b52a1c2d6225d0fc6f";
   sha512.doc = "a6a17f70a44655e1aba11ac1353cc13b36bee762083be76a31c04d90ae73d021659219a3a741b70f0b43888d6b6a6ab356f378fa5850a23ce7423b28a721e924";
 };
@@ -22104,6 +22116,7 @@ tl: { # no indentation
   deps."plain" = tl."plain";
   deps."tex-ini-files" = tl."tex-ini-files";
   deps."unicode-data" = tl."unicode-data";
+  hasFormats = true;
   sha512.run = "c16a8cfa5ce0991d4b667471dd32f692c4e340d1856a36fd684811d40322f912b94125ae101ba095ca6c54b2afa3a37f1ab9af83e4a10328f8c1a1906a02a44b";
   sha512.doc = "0d2492075eb2bb6b9cc8a67b0ed53cf5a8c4c700797d8bce8061a4cf938db5cf19fa4ed6f7adb59b1da0701ff365504e813289dea3c245ad717c82bc58df9128";
   hasRunfiles = true;
@@ -22996,6 +23009,7 @@ tl: { # no indentation
   revision = 57972;
   deps."kpathsea" = tl."kpathsea";
   deps."modes" = tl."modes";
+  hasFormats = true;
   sha512.run = "7ea3271c2a9682ae5ee29a05a95e794f4a6dc5a6244a6c243e856aaa857310127d5593b0643d4ca53eae7feb9c205574f5ea216b7c3c0b731e7f98be99bf1588";
   sha512.doc = "95e7221ac9e3438d4cae336296e7db855df9a7e49ebaaec5dfea294565824938f3d6544459cee9ecbf17312daad4e44c92a7a9a65269feebd2b819f226f305bc";
   hasRunfiles = true;
@@ -23149,6 +23163,7 @@ tl: { # no indentation
   deps."tex" = tl."tex";
   deps."tex-ini-files" = tl."tex-ini-files";
   deps."utf8mex" = tl."utf8mex";
+  hasFormats = true;
   sha512.run = "a79d6a1ecb15f7962826773d7eab4b1ffd86a5c15f8076f096fecf63df1bd661449eb7d14251a57a1eb2bede030ddf93aac170fc3c59ae0a124da6cef69e55be";
   sha512.doc = "091f2825376718d8c2190555af7ef54d0ae5202425d57b986fba861df2f8604301df5a121ccfcfcdc91032d07dcda8289fb8de5d81c487b93b0e202a2a5a658e";
   sha512.source = "6f20a7e4f80670f7dfe5b2cfe3357a5d16b0f627b5e9e95c2d7d46598e00b989d5ae8c797589c56c594b7d3610f5f79cad42f3bb64a628be968e4e9e5d541e98";
@@ -23192,6 +23207,7 @@ tl: { # no indentation
   revision = 54074;
   deps."luatex" = tl."luatex";
   deps."metafont" = tl."metafont";
+  hasFormats = true;
   sha512.run = "ec89212e9a1518f5502f93114377f07e88af787f15c64fc61f40f22a679384f8825384c694dd365d5a74bc5d9417dcf3932c634279550603374bb43df1a7a0e6";
   hasRunfiles = true;
 };
@@ -23549,6 +23565,7 @@ tl: { # no indentation
   deps."plain" = tl."plain";
   deps."tex-ini-files" = tl."tex-ini-files";
   deps."unicode-data" = tl."unicode-data";
+  hasFormats = true;
   sha512.run = "0b3fe440055cc4c943fe8cdee93997718a3625782c5b2962cb514011f2038ad14518f7cffc55dee41f0a57f7401b8f2f493631a2b9cbeb806ae75ae80269f3b5";
   sha512.doc = "a3b962871878f3f34c2d419fa9ae1c27518f3901212796d32649b5524f49fa103a71f46403726b9568ac358ab98afe7b23356a0f2d2d8592c0b84cfc186d5f53";
   hasRunfiles = true;
@@ -23877,6 +23894,7 @@ tl: { # no indentation
 "mptopdf" = {
   revision = 57347;
   deps."plain" = tl."plain";
+  hasFormats = true;
   sha512.run = "69181f1facef413b4e2317180f8dba551fe40bb06e6af8d9378319d8cd3fdec985241e632f19888f32b70f16a40d11c66581f7e3c409bc38b7cfad3733cba2fd";
   sha512.doc = "f0cbd95500324a6b5ca835d62065c83028241e0ce5fa35a313458dc30e6726a21a6d1c267669627061d23f2dd7d7397f471581021e03c817c281cb6efa1d2769";
   hasRunfiles = true;
@@ -25321,6 +25339,7 @@ tl: { # no indentation
   deps."lm" = tl."lm";
   deps."luatex" = tl."luatex";
   deps."rsfs" = tl."rsfs";
+  hasFormats = true;
   sha512.run = "d734139205c47599f3490dfbf13e6f71532ed7c311c3c76b6e444e539f1be6dd1bfffc612f8d019c38923d46ea7c98be72b28cf83c2b00885d787f6f526b0f0a";
   sha512.doc = "285d74614c05d3776a41269da1156930024359eef282b3d5479a5397bdb928357ff3020d3fcf47bc92d8ce4ae37a9c4fd68c9e601d7083911145a2bed2bad4f9";
   hasRunfiles = true;
@@ -26068,6 +26087,7 @@ tl: { # no indentation
   deps."kpathsea" = tl."kpathsea";
   deps."plain" = tl."plain";
   deps."tex-ini-files" = tl."tex-ini-files";
+  hasFormats = true;
   sha512.run = "17c2b07af5e14f9f581d1094f4a3657ec1fe2b19fa96d952d1e4859265dc26e42743dc1fd7e8d6a7de56867be1b50a7071524d0580a8a680c605146893e7ff1b";
   sha512.doc = "8422210dceae381676a4c03784ab2c9b0e9233913eca6d25a9a7d5c5675f9ecb32f0a93dd624dbcc715f20d7e386a7844ea00e6e85473c1af14f8e384cd3f61e";
   hasRunfiles = true;
@@ -26781,6 +26801,7 @@ tl: { # no indentation
   deps."ptex-fonts" = tl."ptex-fonts";
   deps."tex-ini-files" = tl."tex-ini-files";
   deps."unicode-data" = tl."unicode-data";
+  hasFormats = true;
   sha512.run = "787554d26ec4acb3811efbe96349a51b517e5b3b4677754d94dfe1d0ce61088d016f21995e5e9f49e1ace76a1e1f2c057c126981a9e340a9e047597f637aae3e";
   sha512.doc = "f0085548bc20f0389d475a9abf294a8713d36184aef1c65e12d5a7621a4f60e26cf8b63f6a1d558afe964f633455fffd9f492e749938c290b91c10e02c6cb4d7";
   sha512.source = "50afb0b5a1b766f89d7f3dda64b74f080a06d25d66618a4466018209fe4e3245f8deb274b22e30b45fac0a8a9f903ae70ec0301bfb72a394ebc3759e065205fd";
@@ -28314,6 +28335,7 @@ tl: { # no indentation
   deps."plain" = tl."plain";
   deps."ptex-base" = tl."ptex-base";
   deps."ptex-fonts" = tl."ptex-fonts";
+  hasFormats = true;
   sha512.run = "d59108f06a06b7ac46195ef05c0ba6fb4873a88d327839a6143e94392faf3df73ae7b128548ae1ab69915f9883bad554f0e2dbd8d36b8f8c959897210895fba0";
   sha512.doc = "4f863d89fca4c137a84fe75365f600da96f3901d29dd98e9d5733523648b746861a22284707c6e9df90a9939c83adc7bcdf21b310785b8d403459d65294d1133";
 };
@@ -32455,6 +32477,7 @@ tl: { # no indentation
   deps."knuth-lib" = tl."knuth-lib";
   deps."kpathsea" = tl."kpathsea";
   deps."plain" = tl."plain";
+  hasFormats = true;
   sha512.run = "e38f62fcc5ccee22a909eae5ea196e055eae59eedc652ce9788a3b4520995e97f64c683f1ba940853a06030a7ea6f1d749ed4dda1cb30433f87f5f9cdce5a9a7";
   sha512.doc = "3056263569276ca7a62ccb03542eac99b648d36c398ded17204a2624f06920c506985aedd1a639a48bc60af6394d091cdfd9ec44000730bd8e8c83c2234bb569";
   version = "3.141592653";
@@ -32862,6 +32885,7 @@ tl: { # no indentation
   deps."knuth-lib" = tl."knuth-lib";
   deps."plain" = tl."plain";
   deps."tex" = tl."tex";
+  hasFormats = true;
   sha512.run = "7309726b33eadf8290e596aab50bb1af95600a067338b352c1ac092643a8c6d4142180d0146abbbb828a38fb08fdd9ae03da6572e6c221afcd151a51430a423e";
   sha512.doc = "2a4979a10514ccd589b331ff34a677a4e22adbeea73d6112c9a14392b3ee75a8cdb292b008b160792b3d00b812834afa7e0211db860c41f1beb69bbc900fdb90";
   hasRunfiles = true;
@@ -34981,6 +35005,7 @@ tl: { # no indentation
   deps."unicode-data" = tl."unicode-data";
   deps."uptex" = tl."uptex";
   deps."uptex-fonts" = tl."uptex-fonts";
+  hasFormats = true;
   sha512.run = "8acef423a0359136795301e1deaba156c702ee360f309d1884a90b3ed89842389bcc015e70c1461611ebb4a21fb9d5853db5ef40226ce0f61eb11f2a424a70f4";
   sha512.doc = "7cbc40c770c1e04114add004fc4920e3c7dea62f959d06fcbfe54b9fdc45893214ef3e960ac685cce258b07fab424aa7a242da368aa1ee0015ddf8579d582820";
   sha512.source = "9c1c1d0fec518410938e6642123f64242a6ff0bbb6425945897c10754e436fbd82d6739d31717152d183da385800a569d9209f37dd38c8eb77767842e0822a67";
@@ -35021,6 +35046,7 @@ tl: { # no indentation
   deps."ptex-base" = tl."ptex-base";
   deps."uptex-base" = tl."uptex-base";
   deps."uptex-fonts" = tl."uptex-fonts";
+  hasFormats = true;
   sha512.run = "1ee2679e7531fe4406fea72f7efc482f7900da50cb74045a62c0b5e5596862011509c3d966a795bc13538170afd7db26e8cf4f406391a746e45804414f26cff0";
   sha512.doc = "06a3459702bc9838f2246aad7af99c427413a43356d88165e68a132bf8b926d9ab668e6dc10127c27eaac6526085c3fa069bb9709833cef241c94d0f4fb3e02a";
 };
@@ -35954,6 +35980,7 @@ tl: { # no indentation
   deps."tex-ini-files" = tl."tex-ini-files";
   deps."unicode-data" = tl."unicode-data";
   deps."xetex" = tl."xetex";
+  hasFormats = true;
   sha512.run = "93df696d59d088bf5808b5dfe0ad6a834b65252dfe1f06cdc0d2f446a57b97751c08464e58be40ac042cc508d5f846696561d6524bbb84234af11fd3b7c61d00";
 };
 "xellipsis" = {
@@ -36021,6 +36048,7 @@ tl: { # no indentation
   deps."tex-ini-files" = tl."tex-ini-files";
   deps."unicode-data" = tl."unicode-data";
   deps."xetexconfig" = tl."xetexconfig";
+  hasFormats = true;
   sha512.run = "dd788efc6e03e11e2dd88d8e63ca2153e936194391d49ce422a757ba1937986cb80faafa71860bf55ef5cbab51b53cd0c85c60dadddd92940802ede301cdefd6";
   sha512.doc = "544a36d94bf2094403806d934a7e0d92062c1b5b1d0efbf4316d9319a1ff95a1d8f7a4a961c63e4a3eb66c9c4a24789e239f958132e5a4f08c3764f44772c8aa";
   hasRunfiles = true;
@@ -36247,6 +36275,7 @@ tl: { # no indentation
   deps."tex-ini-files" = tl."tex-ini-files";
   deps."unicode-data" = tl."unicode-data";
   deps."xmltexconfig" = tl."xmltexconfig";
+  hasFormats = true;
   sha512.run = "e98a3ab9986d63d2605c87463bb32835d8ffcdd93f577b642da8e8f2447b6a74363c3a5799808c35f2e4b099af2789698ea471e04457a31ba8753ec4762e0ead";
   sha512.doc = "340859a95a102759494222e0cbf19b7f851c44d4cfeac77cee178b69f576151021de53c32ffb8dcb8ed911dae2eecaac943941481b5cccdfb5302bb8291724fb";
   hasRunfiles = true;
diff --git a/pkgs/tools/typesetting/tex/texlive/tl2nix.sed b/pkgs/tools/typesetting/tex/texlive/tl2nix.sed
index 5b4f5efe7622..61150fa8b7cf 100644
--- a/pkgs/tools/typesetting/tex/texlive/tl2nix.sed
+++ b/pkgs/tools/typesetting/tex/texlive/tl2nix.sed
@@ -32,6 +32,7 @@ s/^catalogue-version_(.*)/  version = "\1";/p
 # extract deps
 s/^depend ([^.]*)$/  deps."\1" = tl."\1";/p
 
-# extract hyphenation patterns
+# extract hyphenation patterns and formats
 # (this may create duplicate lines, use uniq to remove them)
 /^execute\sAddHyphen/i\  hasHyphens = true;
+/^execute\sAddFormat/i\  hasFormats = true;
diff --git a/pkgs/tools/virtualization/linode-cli/default.nix b/pkgs/tools/virtualization/linode-cli/default.nix
index f05c4a43b9c8..f169ec7b854a 100644
--- a/pkgs/tools/virtualization/linode-cli/default.nix
+++ b/pkgs/tools/virtualization/linode-cli/default.nix
@@ -11,23 +11,24 @@
 }:
 
 let
-  specVersion = "4.98.0"; # Version taken from: https://www.linode.com/docs/api/openapi.yaml at `info.version`.
+  # specVersion taken from: https://www.linode.com/docs/api/openapi.yaml at `info.version`.
+  specVersion = "4.99.0";
   spec = fetchurl {
     url = "https://raw.githubusercontent.com/linode/linode-api-docs/v${specVersion}/openapi.yaml";
-    sha256 = "sha256-3SweDMfgq2+QQIdeb6EjL7A2Grd/7KQzsbMNZKPtXts=";
+    sha256 = "10z63a2clbiskdnmnyf4m8v2hgc4bdm703y7s2dpw0q09msx9aca";
   };
 
 in
 
 buildPythonApplication rec {
   pname = "linode-cli";
-  version = "5.5.1";
+  version = "5.5.2";
 
   src = fetchFromGitHub {
     owner = "linode";
     repo = pname;
     rev = version;
-    sha256 = "sha256-hljvcYtck89Lzje0XgnvYqh+jebOEOFnOkgEnGZJm0o=";
+    sha256 = "sha256-AjO4h0PaE/QFwbwUVNoe98XOPZ24ct0mbLkua5/YsEA=";
   };
 
   # remove need for git history
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 721ff73356dc..c129aa7c8538 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -8050,10 +8050,7 @@ in
 
   podiff = callPackage ../tools/text/podiff { };
 
-  podman = if stdenv.isDarwin then
-    callPackage ../applications/virtualization/podman { }
-  else
-    callPackage ../applications/virtualization/podman/wrapper.nix { };
+  podman = callPackage ../applications/virtualization/podman/wrapper.nix { };
   podman-unwrapped = callPackage ../applications/virtualization/podman { };
 
   podman-compose = python3Packages.callPackage ../applications/virtualization/podman-compose {};
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 084a7a30f45e..a1a219672cab 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -2247,6 +2247,8 @@ in {
 
   ed25519 = callPackage ../development/python-modules/ed25519 { };
 
+  editables = callPackage ../development/python-modules/editables { };
+
   editdistance = callPackage ../development/python-modules/editdistance { };
 
   editdistance-s = callPackage ../development/python-modules/editdistance-s { };
@@ -6278,7 +6280,9 @@ in {
 
   pynanoleaf = callPackage ../development/python-modules/pynanoleaf { };
 
-  pync = callPackage ../development/python-modules/pync { };
+  pync = callPackage ../development/python-modules/pync {
+    inherit (pkgs) coreutils which;
+  };
 
   pynest2d = callPackage ../development/python-modules/pynest2d { };