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Merge pull request #50434 from bcdarwin/nifty_reg

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niftyreg: init at 1.3.9; niftyseg: init at 1.0.0
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Linus Heckemann 2018-11-16 20:13:12 +01:00 committed by GitHub
parent 9100eb4083 cb6d819b93
commit d1eb06cb18
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3 changed files with 52 additions and 0 deletions
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24
pkgs/applications/science/biology/niftyreg/default.nix Normal file
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@ -0,0 +1,24 @@
{ stdenv, lib, fetchurl, cmake, zlib }:
stdenv.mkDerivation rec {
pname = "niftyreg";
version = "1.3.9";
name = "${pname}-${version}";
src = fetchurl {
url = "mirror://sourceforge/${pname}/nifty_reg-${version}/nifty_reg-${version}.tar.gz";
sha256 = "07v9v9s41lvw72wpb1jgh2nzanyc994779bd35p76vg8mzifmprl";
};
nativeBuildInputs = [ cmake ];
buildInputs = [ zlib ];
enableParallelBuilding = true;
meta = with stdenv.lib; {
homepage = http://cmictig.cs.ucl.ac.uk/wiki/index.php/NiftyReg;
description = "Medical image registration software";
maintainers = with maintainers; [ bcdarwin ];
platforms = [ "x86_64-linux" ];
license = licenses.bsd3;
};
}

24
pkgs/applications/science/biology/niftyseg/default.nix Normal file
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@ -0,0 +1,24 @@
{ stdenv, lib, fetchurl, cmake, eigen, zlib }:
stdenv.mkDerivation rec {
pname = "niftyseg";
version = "1.0";
name = "${pname}-${version}";
src = fetchurl {
url = "https://github.com/KCL-BMEIS/NiftySeg/archive/v${version}.tar.gz";
sha256 = "11q6yldsxp3k6gfp94c0xhcan2y3finzv8lzizmrc79yps3wjkn0";
};
nativeBuildInputs = [ cmake ];
buildInputs = [ eigen zlib ];
enableParallelBuilding = true;
meta = with stdenv.lib; {
homepage = http://cmictig.cs.ucl.ac.uk/research/software/software-nifty/niftyseg;
description = "Software for medical image segmentation, bias field correction, and cortical thickness calculation";
maintainers = with maintainers; [ bcdarwin ];
platforms = platforms.linux;
license = licenses.bsd3;
};
}

4
pkgs/top-level/all-packages.nix
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@ -21194,6 +21194,10 @@ with pkgs;
ncbi_tools = callPackage ../applications/science/biology/ncbi-tools { };
niftyreg = callPackage ../applications/science/biology/niftyreg { };
niftyseg = callPackage ../applications/science/biology/niftyseg { };
paml = callPackage ../applications/science/biology/paml { };
picard-tools = callPackage ../applications/science/biology/picard-tools { };