alioth/nixpkgs
3
0
Fork 0
forked from mirrors/nixpkgs
Code Releases Activity

Merge pull request #20399 from jbedo/plink-ng

Browse source 
plink-ng: init at 1.90b3
This commit is contained in:
Frederik Rietdijk 2016-11-14 13:32:54 +01:00 committed by GitHub
parent 215a41355b a6d6a3972f
commit ce7a438156
2 changed files with 36 additions and 0 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

34
pkgs/applications/science/biology/plink-ng/default.nix Normal file
View file

@ -0,0 +1,34 @@
{ stdenv, fetchFromGitHub, zlib, openblas, darwin}:
stdenv.mkDerivation rec {
name = "plink-ng-${version}";
version = "1.90b3";
src = fetchFromGitHub {
owner = "chrchang";
repo = "plink-ng";
rev = "v${version}";
sha256 = "1zhffjbwpd50dxywccbnv1rxy9njwz73l4awc5j7i28rgj3davcq";
};
buildInputs = [ zlib ] ++ (if stdenv.isDarwin then [ darwin.apple_sdk.frameworks.Accelerate ] else [ openblas ]) ;
buildPhase = ''
sed -i 's|zlib-1.2.8/zlib.h|zlib.h|g' *.c *.h
${if stdenv.cc.isClang then "sed -i 's|g++|clang++|g' Makefile.std" else ""}
make ZLIB=-lz ${if stdenv.isDarwin then "" else "BLASFLAGS=-lopenblas"} -f Makefile.std
'';
installPhase = ''
mkdir -p $out/bin
cp plink $out/bin
'';
meta = {
description = "A comprehensive update to the PLINK association analysis toolset";
homepage = "https://www.cog-genomics.org/plink2";
license = stdenv.lib.licenses.gpl3;
platforms = stdenv.lib.platforms.all;
};
}

2
pkgs/top-level/all-packages.nix
View file

@ -16350,6 +16350,8 @@ in
plink = callPackage ../applications/science/biology/plink/default.nix { };
plink-ng = callPackage ../applications/science/biology/plink-ng/default.nix { };
samtools = callPackage ../applications/science/biology/samtools/default.nix { };
bwa = callPackage ../applications/science/biology/bwa/default.nix { };