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r-modules: fixing rggobi by adding initial expression for ggobi

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This commit is contained in:
Michel Kuhlmann 2015-03-26 12:20:07 +01:00
parent 9e91fe45d6
commit c96bc1e507
3 changed files with 27 additions and 5 deletions
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7
pkgs/development/r-modules/default.nix
View file

@ -267,6 +267,7 @@ let
rgeos = [ pkgs.geos ]; rgeos = [ pkgs.geos ];
rgl = [ pkgs.mesa pkgs.x11 ]; rgl = [ pkgs.mesa pkgs.x11 ];
Rglpk = [ pkgs.glpk ]; Rglpk = [ pkgs.glpk ];
rggobi = [ pkgs.ggobi pkgs.gtk2 pkgs.libxml2 ];
RGtk2 = [ pkgs.gtk2 ]; RGtk2 = [ pkgs.gtk2 ];
Rhpc = [ pkgs.zlib pkgs.bzip2 pkgs.icu pkgs.lzma pkgs.openmpi pkgs.pcre ]; Rhpc = [ pkgs.zlib pkgs.bzip2 pkgs.icu pkgs.lzma pkgs.openmpi pkgs.pcre ];
ridge = [ pkgs.gsl ]; ridge = [ pkgs.gsl ];
@ -339,6 +340,7 @@ let
WideLM = [ pkgs.cudatoolkit ]; WideLM = [ pkgs.cudatoolkit ];
RCurl = [ pkgs.curl ]; RCurl = [ pkgs.curl ];
R2SWF = [ pkgs.pkgconfig ]; R2SWF = [ pkgs.pkgconfig ];
rggobi = [ pkgs.pkgconfig ];
RGtk2 = [ pkgs.pkgconfig ]; RGtk2 = [ pkgs.pkgconfig ];
RProtoBuf = [ pkgs.pkgconfig ]; RProtoBuf = [ pkgs.pkgconfig ];
Rpoppler = [ pkgs.pkgconfig ]; Rpoppler = [ pkgs.pkgconfig ];
@ -664,7 +666,6 @@ let
"BcDiag" # requires fabia "BcDiag" # requires fabia
"bdvis" # requres taxize "bdvis" # requres taxize
"beadarrayFilter" # requires beadarray "beadarrayFilter" # requires beadarray
"beadarrayMSV" # requires rggobi
"bigGP" # requires MPI running. HELP WANTED! "bigGP" # requires MPI running. HELP WANTED!
"bigpca" # requires NCmisc "bigpca" # requires NCmisc
"Biograph" # requires mvna "Biograph" # requires mvna
@ -680,7 +681,6 @@ let
"ChemoSpec" # depends on broken speaq "ChemoSpec" # depends on broken speaq
"classGraph" # requires graph, and Rgraphviz "classGraph" # requires graph, and Rgraphviz
"clpAPI" # requires clp "clpAPI" # requires clp
"clusterfly" # requires rggobi
"compendiumdb" # requires Biobase "compendiumdb" # requires Biobase
"CORM" # requires limma "CORM" # requires limma
"cplexAPI" # requires CPLEX "cplexAPI" # requires CPLEX
@ -821,7 +821,6 @@ let
"permGPU" # requires Biobase "permGPU" # requires Biobase
"PhViD" # requires LBE "PhViD" # requires LBE
"pi0" # requires qvalue "pi0" # requires qvalue
"PKgraph" # requires rggobi
"plmDE" # requires limma "plmDE" # requires limma
"plsRcox" # requires survcomp "plsRcox" # requires survcomp
"PMA" # requires impute "PMA" # requires impute
@ -855,7 +854,6 @@ let
"REBayes" # requires Rmosek "REBayes" # requires Rmosek
"RefFreeEWAS" # requires isva "RefFreeEWAS" # requires isva
"retistruct" # depends on broken RImageJROI "retistruct" # depends on broken RImageJROI
"rggobi" # requires GGobi
"RImageJROI" # requires spatstat "RImageJROI" # requires spatstat
"rjade" # requires V8 to build "rjade" # requires V8 to build
"rJPSGCS" # requires chopsticks "rJPSGCS" # requires chopsticks
@ -886,7 +884,6 @@ let
"selectspm" # depends on broken ecespa "selectspm" # depends on broken ecespa
"semiArtificial" # requires RSNNS "semiArtificial" # requires RSNNS
"SeqFeatR" # requires Biostrings, qvalue, and widgetTools "SeqFeatR" # requires Biostrings, qvalue, and widgetTools
"SeqGrapheR" # requires rggobi
"sequenza" # requires copynumber "sequenza" # requires copynumber
"SGCS" # requires spatstat "SGCS" # requires spatstat
"siar" # requires spatstat "siar" # requires spatstat

23
pkgs/tools/graphics/ggobi/default.nix Normal file
View file

@ -0,0 +1,23 @@
{ stdenv, fetchurl, pkgconfig, libxml2, gtk2 }:
stdenv.mkDerivation rec {
version = "2.1.11";
name = "ggobi-${version}";
src = fetchurl {
url = "http://www.ggobi.org/downloads/ggobi-${version}.tar.bz2";
sha256 = "2c4ddc3ab71877ba184523e47b0637526e6f3701bd9afb6472e6dfc25646aed7";
};
buildInputs = [ pkgconfig libxml2 gtk2 ];
configureFlags = "--with-all-plugins";
meta = with stdenv.lib; {
description = "Visualization program for exploring high-dimensional data";
homepage = http://www.ggobi.org/;
license = licenses.cpl10;
platforms = platforms.linux;
maintainers = [ maintainers.michelk ];
};
}

2
pkgs/top-level/all-packages.nix
View file

@ -1407,6 +1407,8 @@ let
gftp = callPackage ../tools/networking/gftp { }; gftp = callPackage ../tools/networking/gftp { };
ggobi = callPackage ../tools/graphics/ggobi { };
gifsicle = callPackage ../tools/graphics/gifsicle { }; gifsicle = callPackage ../tools/graphics/gifsicle { };
gitlab = callPackage ../applications/version-management/gitlab { gitlab = callPackage ../applications/version-management/gitlab {