From bf484519590560623b44825f4b68914b913a9081 Mon Sep 17 00:00:00 2001
From: Luis Pedro Coelho <luis@luispedro.org>
Date: Fri, 29 Mar 2019 15:03:16 +0100
Subject: [PATCH] megahit: init at 1.1.4
This is widely used in bioinformatics for assembling genomes &
metagenomes
---
.../science/biology/megahit/default.nix | 29 +++++++++++++++++++
pkgs/top-level/all-packages.nix | 2 ++
2 files changed, 31 insertions(+)
create mode 100644 pkgs/applications/science/biology/megahit/default.nix
diff --git a/pkgs/applications/science/biology/megahit/default.nix b/pkgs/applications/science/biology/megahit/default.nix
new file mode 100644
index 000000000000..56bb35b64df8
--- /dev/null
+++ b/pkgs/applications/science/biology/megahit/default.nix
@@ -0,0 +1,29 @@
+{ stdenv, fetchFromGitHub, zlib }:
+
+stdenv.mkDerivation rec {
+ pname = "megahit";
+ version = "1.1.4";
+
+ src = fetchFromGitHub {
+ owner = "voutcn";
+ repo = "megahit";
+ rev = "v${version}";
+ sha256 = "011k0776w76l03zmy70kfd3y9zjmdnspfbs9fcxmnl3bdwd36kcw";
+ };
+
+ buildInputs = [ zlib ];
+
+ installPhase = ''
+ for bin in megahit_sdbg_build megahit megahit_asm_core megahit_toolkit; do
+ install -vD $bin $out/bin/$bin
+ done
+ '';
+
+ meta = with stdenv.lib; {
+ description = "An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph";
+ license = licenses.gpl3;
+ homepage = https://github.com/voutcn/megahit;
+ maintainers = with maintainers; [ luispedro ];
+ platforms = [ "x86_64-linux" ];
+ };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index d8c3459e9874..7ad84c9b28d5 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -21681,6 +21681,8 @@ in
mrbayes = callPackage ../applications/science/biology/mrbayes { };
+ megahit = callPackage ../applications/science/biology/megahit { };
+
messer-slim = callPackage ../applications/science/biology/messer-slim { };
minc_tools = callPackage ../applications/science/biology/minc-tools { };