alioth/nixpkgs
3
0
Fork 0
forked from mirrors/nixpkgs
Code Releases Activity

megahit: init at 1.1.4

Browse source 
This is widely used in bioinformatics for assembling genomes &
metagenomes
This commit is contained in:
Luis Pedro Coelho 2019-03-29 15:03:16 +01:00
parent bad5d145c2
commit bf48451959
2 changed files with 31 additions and 0 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

29
pkgs/applications/science/biology/megahit/default.nix Normal file
View file

@ -0,0 +1,29 @@
{ stdenv, fetchFromGitHub, zlib }:
stdenv.mkDerivation rec {
pname = "megahit";
version = "1.1.4";
src = fetchFromGitHub {
owner = "voutcn";
repo = "megahit";
rev = "v${version}";
sha256 = "011k0776w76l03zmy70kfd3y9zjmdnspfbs9fcxmnl3bdwd36kcw";
};
buildInputs = [ zlib ];
installPhase = ''
for bin in megahit_sdbg_build megahit megahit_asm_core megahit_toolkit; do
install -vD $bin $out/bin/$bin
done
'';
meta = with stdenv.lib; {
description = "An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph";
license = licenses.gpl3;
homepage = https://github.com/voutcn/megahit;
maintainers = with maintainers; [ luispedro ];
platforms = [ "x86_64-linux" ];
};
}

2
pkgs/top-level/all-packages.nix
View file

@ -21681,6 +21681,8 @@ in
mrbayes = callPackage ../applications/science/biology/mrbayes { };
megahit = callPackage ../applications/science/biology/megahit { };
messer-slim = callPackage ../applications/science/biology/messer-slim { };
minc_tools = callPackage ../applications/science/biology/minc-tools { };