From bdf3d727ca04b98aed1f917e33ebd77176521d64 Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Tue, 5 Jan 2021 09:57:42 +1100
Subject: [PATCH] fastp: init 0.20.1

---
 .../science/biology/fastp/default.nix         | 30 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 ++
 2 files changed, 32 insertions(+)
 create mode 100644 pkgs/applications/science/biology/fastp/default.nix

diff --git a/pkgs/applications/science/biology/fastp/default.nix b/pkgs/applications/science/biology/fastp/default.nix
new file mode 100644
index 000000000000..c68486dbcd6b
--- /dev/null
+++ b/pkgs/applications/science/biology/fastp/default.nix
@@ -0,0 +1,30 @@
+{ stdenv
+, fetchFromGitHub
+, zlib
+}:
+
+stdenv.mkDerivation rec {
+  pname = "fastp";
+  version = "0.20.1";
+
+  src = fetchFromGitHub {
+    owner = "OpenGene";
+    repo = "fastp";
+    rev = "v${version}";
+    sha256 = "sha256-pANwppkO9pfV9vctB7HmNCzYRtf+Xt+5HMKzvFuvyFM=";
+  };
+
+  buildInputs = [ zlib ];
+
+  installPhase = ''
+    install -D fastp $out/bin/fastp
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Ultra-fast all-in-one FASTQ preprocessor";
+    license = licenses.mit;
+    homepage = "https://github.com/OpenGene/fastp";
+    maintainers = with maintainers; [ jbedo ];
+    platforms = platforms.x86_64;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 036d4c3d5907..3ca61187acfc 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -26949,6 +26949,8 @@ in
 
   exonerate = callPackage ../applications/science/biology/exonerate { };
 
+  fastp = callPackage ../applications/science/biology/fastp { };
+
   hisat2 = callPackage ../applications/science/biology/hisat2 { };
 
   htslib = callPackage ../development/libraries/science/biology/htslib { };