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R: regenerate CRAN and BIOC packages

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This commit is contained in:
Michel Kuhlmann 2015-07-09 14:52:17 +02:00
parent 0109c5a6fb
commit bb2b683e63
3 changed files with 708 additions and 679 deletions
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pkgs/development/r-modules/bioc-packages.nix
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@ -21,12 +21,12 @@ AffyExpress = derive { name="AffyExpress"; version="1.35.0"; sha256="1ysn3c8mpnq
AffyRNADegradation = derive { name="AffyRNADegradation"; version="1.15.0"; sha256="0x7mwlzvcxplvijprch0anwbfmj1qkrxqd9rc6f4p0zf88z2csal"; depends=[affy]; };
AffyTiling = derive { name="AffyTiling"; version="1.27.0"; sha256="1jqil9hd10cwsqdlxjd7c8s0p9fvrfcqxiw8rfrq117c8dlgl7w6"; depends=[affxparser affy preprocessCore]; };
AgiMicroRna = derive { name="AgiMicroRna"; version="2.19.0"; sha256="1m1fi6pdqwnfn21a4i7psxdg12bn6bhvcsi43bhwlzxzkrz00257"; depends=[affy affycoretools Biobase limma preprocessCore]; };
AllelicImbalance = derive { name="AllelicImbalance"; version="1.7.13"; sha256="195pad565yczbxili0zg6329dxnwaj70vhxz3lizm3pbidlv56jn"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges lattice Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; };
AnalysisPageServer = derive { name="AnalysisPageServer"; version="1.1.1"; sha256="0qbnwxwc205623fmzvhwrhr2jii2bgrd0mcdwi4811pab0dmzf49"; depends=[Biobase graph log4r rjson]; };
AnnotationDbi = derive { name="AnnotationDbi"; version="1.31.16"; sha256="0dxgcdvbq8vi97i6r64x5s4gngynk2hqdjmhfnbk648sq8h2rbrf"; depends=[Biobase BiocGenerics DBI IRanges RSQLite S4Vectors]; };
AnnotationForge = derive { name="AnnotationForge"; version="1.11.3"; sha256="1a3fhinjmrxl400p6w452ar31h40lwd8vlf8snsqqk21vs5mmnla"; depends=[AnnotationDbi Biobase BiocGenerics DBI RSQLite S4Vectors]; };
AllelicImbalance = derive { name="AllelicImbalance"; version="1.7.17"; sha256="0fgqsdlnch5rh04pnzjypgba2n67j3m2aab2yddl0kf0wsmb8zwg"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges lattice Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; };
AnalysisPageServer = derive { name="AnalysisPageServer"; version="1.1.2"; sha256="057xik4hxaqz1f9m8clq504xa4km2byag546iw20v6i0qa9s1dwi"; depends=[Biobase graph log4r rjson]; };
AnnotationDbi = derive { name="AnnotationDbi"; version="1.31.17"; sha256="04xkhqnr9hmgxihfhn35a6s68s8x5layl7mf5whwhwxmlcd76lx4"; depends=[Biobase BiocGenerics DBI IRanges RSQLite S4Vectors]; };
AnnotationForge = derive { name="AnnotationForge"; version="1.11.7"; sha256="00agvwzmnvs8vx2y62x5qd9y09045j74kk9kp69v8m1iqpigs1v0"; depends=[AnnotationDbi Biobase BiocGenerics DBI RSQLite S4Vectors]; };
AnnotationFuncs = derive { name="AnnotationFuncs"; version="1.19.0"; sha256="1qjvkbqpyhwibdqv1c4n2z5wjnzx0h3kdas3fs33jhb597bxhl1y"; depends=[AnnotationDbi]; };
AnnotationHub = derive { name="AnnotationHub"; version="2.1.26"; sha256="0py74da9j3j0h0pvf1kvfzf3cixn52x9l5ac7igans4cm5pizr0k"; depends=[AnnotationDbi BiocGenerics BiocInstaller httr interactiveDisplayBase RSQLite S4Vectors]; };
AnnotationHub = derive { name="AnnotationHub"; version="2.1.28"; sha256="055biw0izf0la405igpp22azgharwhr6xfks32lr4dgbh8n70qjd"; depends=[AnnotationDbi BiocGenerics BiocInstaller httr interactiveDisplayBase RSQLite S4Vectors]; };
ArrayExpress = derive { name="ArrayExpress"; version="1.29.1"; sha256="0gyckxsmmh81ykf7mj952h2a4z58xrf9lbnmv884hz7zj317lf83"; depends=[affy Biobase limma XML]; };
ArrayExpressHTS = derive { name="ArrayExpressHTS"; version="1.19.0"; sha256="0qyd9jhkvw4lxqjvix28yzdx08hi7vf77ynlqxcl2q1lb3gmbxar"; depends=[Biobase BiocGenerics biomaRt Biostrings bitops DESeq edgeR GenomicRanges Hmisc IRanges R2HTML RColorBrewer rJava Rsamtools sampling sendmailR ShortRead snow svMisc XML]; };
ArrayTV = derive { name="ArrayTV"; version="1.7.0"; sha256="11dlq4lmzw0x8z2qrxff6xlcilp95nd71jpdvg3i5yni3ws6z5m1"; depends=[DNAcopy foreach oligoClasses]; };
@ -41,15 +41,15 @@ BEclear = derive { name="BEclear"; version="1.1.0"; sha256="1icaxkxwr2rkii4fffln
BGmix = derive { name="BGmix"; version="1.29.0"; sha256="0s2s6ylbw2wvdkn28842ghsflhcmcn156zw3fxmbdnz7xs29qs1f"; depends=[KernSmooth]; };
BHC = derive { name="BHC"; version="1.21.0"; sha256="0f8qqid4qxw52zjvvm024wcmn0afr7avkr4hr2jfyvs0ga49khx8"; depends=[]; };
BRAIN = derive { name="BRAIN"; version="1.15.0"; sha256="09yd3xf3h85wdf56p38mnspyqbswl2v8zb81yg0a008p0l5ax8xr"; depends=[Biostrings lattice PolynomF]; };
BSgenome = derive { name="BSgenome"; version="1.37.1"; sha256="0nmj1wdp1xlkf603sw1h0k3x0jywj3ykaws8sdb4hizb52pgzw8z"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors XVector]; };
BSgenome = derive { name="BSgenome"; version="1.37.3"; sha256="1a0qk3lh2qhynsink8ysc16d4pmam2midakh26adn1hqrf6n22gb"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors XVector]; };
BUS = derive { name="BUS"; version="1.25.0"; sha256="1n3s0pw4ijgh927mahwqybks8i6ysybp7xn4a86nrbpr2kqhznrd"; depends=[infotheo minet]; };
BaseSpaceR = derive { name="BaseSpaceR"; version="1.13.1"; sha256="0w7hdzncjds0dji03ldgk4zyrpr3qal2lzdlhlbc8809fjlp3jb9"; depends=[RCurl RJSONIO]; };
BaseSpaceR = derive { name="BaseSpaceR"; version="1.13.2"; sha256="17g87vfx6yy4cdqxchl9ig6s2vhnpfbarssw80ha6kbqw81jh55h"; depends=[RCurl RJSONIO]; };
Basic4Cseq = derive { name="Basic4Cseq"; version="1.5.1"; sha256="0a4b11rv5ilv84qqpvf320c3knaajg4hlby5km0zzms3vbisr4hi"; depends=[Biostrings caTools GenomicAlignments GenomicRanges RCircos]; };
BayesPeak = derive { name="BayesPeak"; version="1.21.0"; sha256="0mz00mk6gmc5g79iifn5hzfwf7s568n6s6wy46vrnnnnr3sk9w49"; depends=[IRanges]; };
BeadDataPackR = derive { name="BeadDataPackR"; version="1.21.0"; sha256="1h9zq2zjwslgwzz5zghjkszhy9d6bcrpssk6x15a9i0wb6nkrdxm"; depends=[]; };
BeadDataPackR = derive { name="BeadDataPackR"; version="1.21.1"; sha256="16dh7byvigd6161qznd1k9cz9hp0r50nbrd8nqlsh28zr60pvrj3"; depends=[]; };
BiGGR = derive { name="BiGGR"; version="1.5.0"; sha256="1q9m870pyhxd1627n94c259094k8jyrg22ni26qpnxkapj18lr0b"; depends=[hyperdraw hypergraph LIM rsbml stringr]; };
BiRewire = derive { name="BiRewire"; version="2.1.0"; sha256="1rf3j0rfbzyd17ashj99fjahilz4pgil7ch6iyfzipb6894faxwi"; depends=[igraph slam]; };
BiSeq = derive { name="BiSeq"; version="1.9.1"; sha256="0s8mhynjprg4bpn9p88rzpm6na9581bzmyv4wljsdqlz0wcb87az"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; };
BiRewire = derive { name="BiRewire"; version="2.1.2"; sha256="08innw83yr3imrgklva9djjx3a5sd7mqfnb70ggi6hia729kar01"; depends=[igraph slam]; };
BiSeq = derive { name="BiSeq"; version="1.9.2"; sha256="1z401p2y9sa2cs1zwnkvf3968nyv5c7wcbxvldjyl5dg04qw88wn"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; };
BicARE = derive { name="BicARE"; version="1.27.0"; sha256="19hslc78nijcs6gyxzzcd8856wa1gf5dsrvm4x6r9lprfrk7d7fb"; depends=[Biobase GSEABase multtest]; };
BioMVCClass = derive { name="BioMVCClass"; version="1.37.0"; sha256="1k4ba98cjaqhy33vsmflnwasi0vxr30dvj6861pz625m87fyp2g6"; depends=[Biobase graph MVCClass Rgraphviz]; };
BioNet = derive { name="BioNet"; version="1.29.0"; sha256="0q86sfv29y8haq8zhxc93p7zl1nh8aq0yj31hvw8xx6g75xlapaz"; depends=[AnnotationDbi Biobase graph igraph RBGL]; };
@ -57,9 +57,9 @@ BioSeqClass = derive { name="BioSeqClass"; version="1.27.0"; sha256="1pv7zibcrgb
Biobase = derive { name="Biobase"; version="2.29.1"; sha256="12cckssh7x4dd8vaapp5nfc5bfcqls8k3rblcfi17z5cpi0jply6"; depends=[BiocGenerics]; };
BiocCaseStudies = derive { name="BiocCaseStudies"; version="1.31.0"; sha256="05nj9i9y8clf406bjcflj8lsrp9x9iw6my1bdqnxg3nv2krp37xn"; depends=[Biobase]; };
BiocCheck = derive { name="BiocCheck"; version="1.5.6"; sha256="0gpmrqvj31n73bqljf23wbsw3hp44hl3z1jhc2q86s3mw6hlcfip"; depends=[BiocInstaller biocViews codetools devtools graph httr knitr optparse]; };
BiocGenerics = derive { name="BiocGenerics"; version="0.15.2"; sha256="16r4jq5yq3xg8s212dngrf6a63ggb87654cf45f4386c56gcczgg"; depends=[]; };
BiocInstaller = derive { name="BiocInstaller"; version="1.19.6"; sha256="09f3ybmaklac71ixd4imfig7861qc339kpqhjybq97a3yw8zcksa"; depends=[]; };
BiocParallel = derive { name="BiocParallel"; version="1.3.26"; sha256="1dy3i5ypjxnz57yw2pyfm7778fdficbp6abbsrq79rgr1dvfbqyr"; depends=[futile_logger snow]; };
BiocGenerics = derive { name="BiocGenerics"; version="0.15.3"; sha256="1wk7mr3jmjr2ljqqlmnpvb3x2cflkkhsyjl2cd4ns0gld4rmmm8x"; depends=[]; };
BiocInstaller = derive { name="BiocInstaller"; version="1.19.8"; sha256="1jmzvs3sv324n9j6j8mrjpc648650k0sv23xni09x55zq41nm672"; depends=[]; };
BiocParallel = derive { name="BiocParallel"; version="1.3.31"; sha256="0s47gbrj8cs8wpsac14nj2blqwwr2fkg8fsr61fz5v0j21wrk3kd"; depends=[futile_logger snow]; };
BiocStyle = derive { name="BiocStyle"; version="1.7.4"; sha256="0wlydy1a3pspnyjg5vl0657z620n5vlhx99hxisskbrsr026mhmg"; depends=[]; };
Biostrings = derive { name="Biostrings"; version="2.37.2"; sha256="0j6701qgrnphsy9p34sf3s6d91j1zbd824zwv9rsfdmdffbkqq3b"; depends=[BiocGenerics IRanges S4Vectors XVector zlibbioc]; };
BitSeq = derive { name="BitSeq"; version="1.13.0"; sha256="1d397bcdyi3d35l1q1661spm3xhr7hqlsrjr5a2ybsjs3wqkf4fj"; depends=[IRanges Rsamtools S4Vectors zlibbioc]; };
@ -83,12 +83,13 @@ CGHnormaliter = derive { name="CGHnormaliter"; version="1.23.0"; sha256="1rd7lbz
CGHregions = derive { name="CGHregions"; version="1.27.0"; sha256="0ah7cxaq1qvgwxvgp8jzkwyzdqa4yji7ylhdq2whysvc73aciikg"; depends=[Biobase CGHbase]; };
CMA = derive { name="CMA"; version="1.27.0"; sha256="10bbmlyd8370dr1azrsljlslail5i9pwy8m524laqq85196lf6lv"; depends=[Biobase]; };
CNAnorm = derive { name="CNAnorm"; version="1.15.0"; sha256="13wraamvj1vr5iiwknz5g1jq8zmq3gqzcsphn156rmxivpkxmk8l"; depends=[DNAcopy]; };
CNEr = derive { name="CNEr"; version="1.5.3"; sha256="101cf9hpz3ak04xf9i9b6wbmmdjfgawfvxsb4zflv6avjdqnsqbm"; depends=[Biostrings DBI GenomeInfoDb GenomicAlignments GenomicRanges IRanges RSQLite rtracklayer S4Vectors XVector]; };
CNEr = derive { name="CNEr"; version="1.5.4"; sha256="10qvxgrp6g8yq7gn089v4aq3xyhvi21mml30aszwv718lq5xhcrz"; depends=[Biostrings DBI GenomeInfoDb GenomicAlignments GenomicRanges IRanges RSQLite rtracklayer S4Vectors XVector]; };
CNORdt = derive { name="CNORdt"; version="1.11.0"; sha256="1c01ra85j04wdwaqzvc3qvva9sf878qcy4xaz8kxd6b49ringcia"; depends=[abind CellNOptR]; };
CNORfeeder = derive { name="CNORfeeder"; version="1.9.0"; sha256="1d2lskj5vlg0ry3gkm61i1cahf6m9vg2599qj6v8z7w9wmp37cb7"; depends=[CellNOptR graph]; };
CNORfuzzy = derive { name="CNORfuzzy"; version="1.11.0"; sha256="0kzlad2mkfvqxv4lv8hcc10cspcg31yp49r6pdn2vakif5gbpnz3"; depends=[CellNOptR nloptr]; };
CNORode = derive { name="CNORode"; version="1.11.0"; sha256="0cmv9s23pcd48fpzg92i5h2g10z49n091f2lnarldsay3sj8wlcy"; depends=[CellNOptR genalg]; };
CNTools = derive { name="CNTools"; version="1.25.0"; sha256="05k939z92mmqajirl4w872qnh59093dpxk6da5bcmrr43h65dn95"; depends=[genefilter]; };
CNVPanelizer = derive { name="CNVPanelizer"; version="0.99.6"; sha256="1p5kffb7j8k38gj0h6qs6fhn9yj0i0ap2lbf7zmgi3h5jkx1pwks"; depends=[BiocParallel cn_mops exomeCopy foreach GenomicRanges ggplot2 IRanges matrixStats plyr Rsamtools xlsx]; };
CNVrd2 = derive { name="CNVrd2"; version="1.7.0"; sha256="18970q33dw51b7jas26dl2cr2ghwjxrllgmqykq0f50b55sv01p7"; depends=[DNAcopy ggplot2 gridExtra IRanges rjags Rsamtools VariantAnnotation]; };
CNVtools = derive { name="CNVtools"; version="1.63.0"; sha256="005xw4rbp4zdg78jhrq5l4201kq5889py0jh49kfjpk000nvvmj9"; depends=[survival]; };
CODEX = derive { name="CODEX"; version="1.1.0"; sha256="0k3ncnngblbx8hhv5p31dac4s9asjc8hddn4b0z20zkqncpgs16s"; depends=[GenomeInfoDb Rsamtools]; };
@ -96,7 +97,7 @@ COHCAP = derive { name="COHCAP"; version="1.7.0"; sha256="0clr1jh4jnq54phsnl90zf
COMPASS = derive { name="COMPASS"; version="1.7.2"; sha256="0c83fsrmi7d2888pa3lnln42mlbnjgvpxw337vdh3dar1185a5b0"; depends=[abind clue data_table knitr plyr RColorBrewer Rcpp scales]; };
CORREP = derive { name="CORREP"; version="1.35.0"; sha256="0hlij2ch8r3lv130hvyshb82lfqz2c7kr56bka1ghmg6jp0xf1n6"; depends=[e1071]; };
COSNet = derive { name="COSNet"; version="1.3.3"; sha256="0l9sn0cki0mxacxv0bwp3cczcl8rscx8g3lnr0r448f13j8198f4"; depends=[]; };
CRISPRseek = derive { name="CRISPRseek"; version="1.9.1"; sha256="1wrjvnr8i50b9r4h8m84whs5nhqxi1w91c622kid7adwmhzq3ri2"; depends=[BiocGenerics Biostrings BSgenome seqinr]; };
CRISPRseek = derive { name="CRISPRseek"; version="1.9.2"; sha256="1h004gznxrm2k3l4xdr6iyn97rkkh8n85phskiink815ysm2l9z4"; depends=[BiocGenerics Biostrings BSgenome seqinr]; };
CRImage = derive { name="CRImage"; version="1.17.0"; sha256="1sab95gngwi7c333n9hnbd9fdvdy9i69pjpx5ic5799s7qr03llw"; depends=[aCGH DNAcopy e1071 EBImage foreach MASS sgeostat]; };
CSAR = derive { name="CSAR"; version="1.21.0"; sha256="1wn7zxmy5ssj2jkk2624j42yv67wdcigp5ksb6fc2kzpgnvqmxl1"; depends=[GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
CSSP = derive { name="CSSP"; version="1.7.0"; sha256="1ydxj358sfaygzjvh0b042p7gymjyl7nr5cnxrh8c7x2mv2hdh4d"; depends=[]; };
@ -107,29 +108,29 @@ CausalR = derive { name="CausalR"; version="0.99.12"; sha256="038raljgrdwsp8dzc5
CellNOptR = derive { name="CellNOptR"; version="1.15.0"; sha256="14x68i7wss44hmfihyqkw340lc0dpsccqsn1l2a0zs0gfkwgw3a5"; depends=[ggplot2 graph hash RBGL RCurl Rgraphviz XML]; };
CexoR = derive { name="CexoR"; version="1.7.2"; sha256="1rhz97c8avmx9g3zf4vdzqb56v98dlh9xw74nywqvznn7wbq8rvp"; depends=[genomation GenomeInfoDb GenomicRanges idr IRanges RColorBrewer Rsamtools rtracklayer S4Vectors]; };
ChAMP = derive { name="ChAMP"; version="1.7.0"; sha256="0ll50qyq9k8x4bv30dap6g6lpavh7diwxllm501jgg39kp956d08"; depends=[DNAcopy GenomicRanges impute IRanges limma marray minfi plyr preprocessCore RPMM sva wateRmelon]; };
ChIPQC = derive { name="ChIPQC"; version="1.5.1"; sha256="0nvpq2m267nf3aiv7xvw1fkwnr53qqzhs2nmyhjiqdw9ckias134"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors]; };
ChIPQC = derive { name="ChIPQC"; version="1.5.2"; sha256="0g630lpzwfbg5hgicg0s906a3a6gidswmidszx0hmn3479fah74m"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors]; };
ChIPXpress = derive { name="ChIPXpress"; version="1.11.0"; sha256="11aifr69ss1hakrhba985bwz6k1sqkpzvv7gnzn8cgqnzxyr2i6b"; depends=[affy biganalytics bigmemory Biobase frma GEOquery]; };
ChIPpeakAnno = derive { name="ChIPpeakAnno"; version="3.3.2"; sha256="0ww3ddnvdc561lhz27h8n3ywi1xpx1cbsqk2i8m5rkpykkkkr2dh"; depends=[AnnotationDbi BiocGenerics BiocInstaller biomaRt Biostrings BSgenome GenomicFeatures GenomicRanges graph IRanges limma multtest RBGL VennDiagram]; };
ChIPseeker = derive { name="ChIPseeker"; version="1.5.4"; sha256="10h2gbc1irzlkv9b12k9z54csaav6qpvjvjbgqzh7dcm03l14fah"; depends=[AnnotationDbi BiocGenerics boot dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gtools IRanges magrittr plotrix plyr RColorBrewer rtracklayer S4Vectors]; };
ChIPseqR = derive { name="ChIPseqR"; version="1.23.1"; sha256="0di3vh865m84cvl9mkwiqmz8jz5y54q4ayc0fbzjkwh790qxb48j"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; };
ChIPseeker = derive { name="ChIPseeker"; version="1.5.6"; sha256="0ppv51hd44h15mkw15samdq1awsh1kdfy5p87pj60nmvbl0qj39h"; depends=[AnnotationDbi BiocGenerics boot dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gtools IRanges magrittr plotrix plyr RColorBrewer rtracklayer S4Vectors]; };
ChIPseqR = derive { name="ChIPseqR"; version="1.23.2"; sha256="1k1vbck7kjyzzgm0hg8hxpq6zfg71rca76q3998fcnnlzsmgvcf4"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; };
ChIPsim = derive { name="ChIPsim"; version="1.23.1"; sha256="13kniwvwa49n1kc9114ljn1fmzaiyb2nh33if596llql60p7nd23"; depends=[Biostrings IRanges ShortRead XVector]; };
ChemmineOB = derive { name="ChemmineOB"; version="1.7.1"; sha256="04agfsdzccsvvvis6vy1gg83gfs4nrph950v6bbzgk15ki32rsjz"; depends=[BH BiocGenerics Rcpp zlibbioc]; };
ChemmineR = derive { name="ChemmineR"; version="2.21.7"; sha256="01riyjdjxnw1fybps1g5sbbcv1yn3mn222wg3w825m7lcb1hg13z"; depends=[BH BiocGenerics DBI digest ggplot2 Rcpp RCurl rjson]; };
ChromHeatMap = derive { name="ChromHeatMap"; version="1.23.0"; sha256="1z0w201lbhsapx4p0gn9x65zxjbzh8g51jjfcvy61xrqbbyshwv1"; depends=[annotate AnnotationDbi Biobase BiocGenerics IRanges rtracklayer]; };
ClassifyR = derive { name="ClassifyR"; version="1.3.0"; sha256="0jn7pd3mh6m6cqg5dldn8vmi3ffjhv1hn3gvvy6bl1g80a0xf5mb"; depends=[Biobase BiocParallel locfit ROCR]; };
ClassifyR = derive { name="ClassifyR"; version="1.3.4"; sha256="1bq4czpmz5s3xpgfhv355xjgwslswj5kpza5nz3ribdqs762943w"; depends=[Biobase BiocParallel locfit ROCR]; };
Clomial = derive { name="Clomial"; version="1.5.0"; sha256="1kxc0bgfrfj0bbx696513mn8n6vficdsd3ag5pqs5xz2bb7vx4qn"; depends=[matrixStats permute]; };
Clonality = derive { name="Clonality"; version="1.17.0"; sha256="1irb13wi5lq28nni0b89fy06vvjwpzigfdwfmzjscrmhzdysrfa6"; depends=[DNAcopy]; };
CoCiteStats = derive { name="CoCiteStats"; version="1.41.0"; sha256="0shp06qy8cvwq0723xc7qxrxv9qhkids3gq3aqqhlvn1s66nw7nq"; depends=[AnnotationDbi]; };
CoGAPS = derive { name="CoGAPS"; version="2.3.1"; sha256="037abxyw5xkj537di2q3q75isb2qr2h2czr5a6q30g8qzh1xj3ik"; depends=[BH gplots RColorBrewer Rcpp]; };
CoGAPS = derive { name="CoGAPS"; version="2.3.2"; sha256="0jh5ij66x3isz67mj0jwypyshplk1l1p47n2hvwgq87xmjzv6c8p"; depends=[BH gplots RColorBrewer Rcpp]; };
CoRegNet = derive { name="CoRegNet"; version="1.5.0"; sha256="14yq1f005fcfmfp88h2fy05gdgbskjws11qbdh0ndx3sf93nzxm2"; depends=[arules igraph shiny]; };
CompGO = derive { name="CompGO"; version="1.5.0"; sha256="128ib7w0jxba0p32s796i864b73zjfxac56znd0v4wv4vxv3jiv6"; depends=[GenomicFeatures ggplot2 pathview pcaMethods RDAVIDWebService reshape2 Rgraphviz rtracklayer]; };
ComplexHeatmap = derive { name="ComplexHeatmap"; version="1.1.9"; sha256="127w7bhjmzzav3y6vz3dhr5da37vzl86xriy32rhiyppbxx34s78"; depends=[circlize colorspace GetoptLong RColorBrewer]; };
ComplexHeatmap = derive { name="ComplexHeatmap"; version="1.2.2"; sha256="0v1mj0n5gjdarwdrl9ir9gms0f3v0gplx4n34zvyszxivh4ph4jj"; depends=[circlize colorspace dendextend GetoptLong RColorBrewer]; };
ConsensusClusterPlus = derive { name="ConsensusClusterPlus"; version="1.23.0"; sha256="13iikfh234d2z4k487lb3shmnrfijygrf6gz3x481gba2psnbjyw"; depends=[Biobase cluster]; };
CopyNumber450k = derive { name="CopyNumber450k"; version="1.5.0"; sha256="0mjhmh4shgckv43zvg4yqr17jfi9p9xnc40fwy9fw9c4vjcfsvsj"; depends=[Biobase BiocGenerics DNAcopy minfi preprocessCore]; };
CopywriteR = derive { name="CopywriteR"; version="2.1.2"; sha256="0lja77qdfbsl9cc1nv4jbrjwiq8bb93ja6na8hqksrrm9g1qs4q4"; depends=[BiocParallel chipseq data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; };
CorMut = derive { name="CorMut"; version="1.11.0"; sha256="0s92bh3610frxbm0gqvlznay70dy7x61hvc0qgh6xmcyz0llx27g"; depends=[igraph seqinr]; };
Cormotif = derive { name="Cormotif"; version="1.15.0"; sha256="1v36ylwkxr6yqasckmmj2dkr7s72f39srhwvm93rs1rl7kw4dc4p"; depends=[affy limma]; };
CoverageView = derive { name="CoverageView"; version="1.5.0"; sha256="0ix1xy0in3nzd1lm9imy1wrm347dib5nfa6105zkc993bnh11wls"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; };
CoverageView = derive { name="CoverageView"; version="1.5.1"; sha256="0qi8r6vw5c6kmlw12j81jmgn555wd51w80m80gm5n7hqnggpwkh4"; depends=[BiocGenerics GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; };
DART = derive { name="DART"; version="1.17.1"; sha256="1z7lf4d9yjcyikq9j3348z5sxjqaly46c0ls7f9cl8nnqdpw7w42"; depends=[igraph]; };
DASiR = derive { name="DASiR"; version="1.9.0"; sha256="0b3b7kmhsd6bb1s57c89h495j1ax6779wfca112fq6ba3z4dih3n"; depends=[Biostrings GenomicRanges IRanges XML]; };
DAVIDQuery = derive { name="DAVIDQuery"; version="1.29.0"; sha256="0gvm6qjx8y61nbnbz66md74pfc4awj4900pjr8q1m5sip5yzbxj2"; depends=[RCurl]; };
@ -137,51 +138,51 @@ DBChIP = derive { name="DBChIP"; version="1.13.0"; sha256="0gk9kgmyp9540sq5gpbn7
DECIPHER = derive { name="DECIPHER"; version="1.15.0"; sha256="1kbdsqvkznzsk4ljy91r5ipndwxb8hhkm46qqkakgr24mia3yvl1"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; };
DEDS = derive { name="DEDS"; version="1.43.0"; sha256="1z049ppkrbyp0xjpiygz5i6rbxbv3vvnvspwz2vv77495v7ykj6z"; depends=[]; };
DEGraph = derive { name="DEGraph"; version="1.21.0"; sha256="17f04qngcx8y4glr5wiryi8fifbla8fxh8nb6wagnrai5x6vhzis"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; };
DEGreport = derive { name="DEGreport"; version="1.3.0"; sha256="0qz7zmg9r76pwmn4hfpwagaij080pwmj7373h9fiiqk51416pqkq"; depends=[coda edgeR ggplot2 Nozzle_R1 plyr quantreg rjags]; };
DEGreport = derive { name="DEGreport"; version="1.4.0"; sha256="06l803iy18kkv05b4h46vmzws20c0735m6csfkn2vp3bik8xh4lp"; depends=[coda edgeR ggplot2 Nozzle_R1 plyr quantreg]; };
DEGseq = derive { name="DEGseq"; version="1.23.0"; sha256="0993f140wwv9z9l53f9g74x7l28bflxq7wdcbilfz7ijhh7isr7p"; depends=[qvalue samr]; };
DESeq = derive { name="DESeq"; version="1.21.0"; sha256="13f6phdf9g325dlpn38l7zrq3mzldhldil134acxi9p3l50bx23y"; depends=[Biobase BiocGenerics genefilter geneplotter lattice locfit MASS RColorBrewer]; };
DESeq2 = derive { name="DESeq2"; version="1.9.10"; sha256="1mvxhw7nzcv2p5kr90yyv29dl8vqcvz9y4z0vgpbl6s4qh741br4"; depends=[Biobase BiocGenerics BiocParallel genefilter geneplotter GenomicRanges ggplot2 Hmisc IRanges locfit Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; };
DEXSeq = derive { name="DEXSeq"; version="1.15.6"; sha256="19hjrdfl28jma8jb00b0dywqpj07bas623avqaw0c2xns2zrb224"; depends=[Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools statmod stringr]; };
DESeq2 = derive { name="DESeq2"; version="1.9.21"; sha256="0ywhakri35cz37zlwv760zgmk1z9ldivl0i24mawavccc0hcvrhk"; depends=[Biobase BiocGenerics BiocParallel genefilter geneplotter GenomicRanges ggplot2 Hmisc IRanges locfit Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; };
DEXSeq = derive { name="DEXSeq"; version="1.15.9"; sha256="0ml4ibzhw38w0mfp0vdbbkisz40rw65yyd71q3ppj7jg4r4ch39a"; depends=[Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools statmod stringr]; };
DFP = derive { name="DFP"; version="1.27.0"; sha256="0xcipbhfzvrpbm6dh2y3lbvfbwpn4wly32sssfm702zik5wm9dy1"; depends=[Biobase]; };
DMRcaller = derive { name="DMRcaller"; version="1.1.1"; sha256="1g7q7cwivvb0m2y4fixvbxp51zfag1jv66bdlai3gawr94pcx56y"; depends=[GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; };
DMRcate = derive { name="DMRcate"; version="1.5.0"; sha256="12q6if9lljia37zwhcc9fpcp9vhkp1qhzchpypwwyn2j4344bmp3"; depends=[limma minfi]; };
DMRforPairs = derive { name="DMRforPairs"; version="1.5.0"; sha256="0d14qgx07xq7wa687a2znpfw0zcg8ccvxjawkjdbi6ayjwpb6zd7"; depends=[GenomicRanges Gviz R2HTML]; };
DNAcopy = derive { name="DNAcopy"; version="1.43.0"; sha256="1v1i4bfkblimdmazv29csqr46jaiv8lncihgywvq5wfn8ccr7xl9"; depends=[]; };
DOQTL = derive { name="DOQTL"; version="1.3.0"; sha256="0g3nyamqdhjg8105kcq6nsgjgqzcxkp04194j82v1xb31baj53bg"; depends=[annotate annotationTools Biobase BiocGenerics biomaRt corpcor GenomicRanges hwriter IRanges mclust QTLRel Rsamtools RUnit S4Vectors XML]; };
DOSE = derive { name="DOSE"; version="2.7.7"; sha256="0bdn26akwvhw3aksxw68mjn1s462vv9y12v6wlykpp2sla1naywv"; depends=[AnnotationDbi ggplot2 GOSemSim igraph plyr qvalue reshape2 scales]; };
DSS = derive { name="DSS"; version="2.7.1"; sha256="1vf9j3clb7ac1zm8wx8vi0kmsv6p6533qxv4932gjcs5nn482516"; depends=[Biobase bsseq]; };
DOSE = derive { name="DOSE"; version="2.7.9"; sha256="0l0rkd7siz251pxgmfv4ijq1l68w3lkjlc83zmhf4ddjf3db07ig"; depends=[AnnotationDbi ggplot2 GOSemSim igraph plyr qvalue reshape2 scales]; };
DSS = derive { name="DSS"; version="2.7.2"; sha256="01czzgkx6rqpps93vfn8dg2n2hm2nkd887mc955z67845jkrgi2j"; depends=[Biobase bsseq]; };
DTA = derive { name="DTA"; version="2.15.0"; sha256="0amibwj5mnm2plkf3ys8sgy4lpwr60fnvika0psdrahgb4blmkzp"; depends=[LSD scatterplot3d]; };
DeconRNASeq = derive { name="DeconRNASeq"; version="1.11.0"; sha256="0665chwpbs2pw753nb2x65cs9r9ghb5123bsrzrv6pz2p3ni8yz7"; depends=[ggplot2 limSolve pcaMethods]; };
DiffBind = derive { name="DiffBind"; version="1.15.3"; sha256="1akx65vi8razwpfxnvilh4x1vb8qbsfr2q8lygsb3imfrrb83q44"; depends=[amap edgeR GenomicAlignments GenomicRanges gplots IRanges lattice limma locfit RColorBrewer Rsamtools SummarizedExperiment systemPipeR zlibbioc]; };
DirichletMultinomial = derive { name="DirichletMultinomial"; version="1.11.1"; sha256="1ds5gghxs4nb171cvahnb70s86hpqib6alijjfgdzcax09miw72v"; depends=[IRanges S4Vectors]; };
DirichletMultinomial = derive { name="DirichletMultinomial"; version="1.11.2"; sha256="01wmvs7alq7gy1nmb5gdbglfs51qdhwysbmmjvh7yyhb8dqbvrj4"; depends=[IRanges S4Vectors]; };
DriverNet = derive { name="DriverNet"; version="1.9.0"; sha256="0visiafw9m7i0yy70fvnmdkhg9z946sg5hdl5vnvj8c6g3mfacxy"; depends=[]; };
DrugVsDisease = derive { name="DrugVsDisease"; version="2.9.0"; sha256="1wmw1r0x7kkmp47743aq0pp71wamnf5gsk6bhz6rdvswzb12iyqk"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt GEOquery limma qvalue RUnit xtable]; };
DupChecker = derive { name="DupChecker"; version="1.7.0"; sha256="02wwwnx3w8rxiassd62xr295paw8py9pqsk1396qb5k773l6bfxv"; depends=[R_utils RCurl]; };
DynDoc = derive { name="DynDoc"; version="1.47.0"; sha256="0gpmhqav4dx8p86pkh18fpmlki60zqaz00m2zhziiawigbrz41ph"; depends=[]; };
EBImage = derive { name="EBImage"; version="4.11.2"; sha256="1mnpwf844lgz4agk9w67pyppz6kq6fqbmarpv6pkwc9p3jb05nsy"; depends=[abind BiocGenerics fftwtools jpeg locfit png tiff]; };
EBSeq = derive { name="EBSeq"; version="1.9.1"; sha256="0c65iiw9qxk6pqmnnjxdncpfvddgbvdfghshb4qpida4zp1yc7sg"; depends=[blockmodeling gplots]; };
EBImage = derive { name="EBImage"; version="4.11.5"; sha256="15npg7r76avlxq036yis85b91bgl10y4wjjcdnrcn39dbvb50zav"; depends=[abind BiocGenerics fftwtools jpeg locfit png tiff]; };
EBSeq = derive { name="EBSeq"; version="1.9.2"; sha256="0n3y9ikamcfm786fvqp5b2b4g2fx8hvnicsx1sh4rvrpyab9f5jm"; depends=[blockmodeling gplots]; };
EBSeqHMM = derive { name="EBSeqHMM"; version="1.3.1"; sha256="0lyf363f1wfgacrj5cyq8n3f3ssl5q400mn2q94cpai6k0qmvgs1"; depends=[EBSeq]; };
EBarrays = derive { name="EBarrays"; version="2.33.0"; sha256="1zvfqf49chiks5vmj5ki89pvy14bm1cman47n3ybba1gg8z8mw94"; depends=[Biobase cluster lattice]; };
EBcoexpress = derive { name="EBcoexpress"; version="1.13.0"; sha256="0fl0a7xasqcwvjlgf3h51akyhwpras2865m2idz1nmacm42q1w79"; depends=[EBarrays mclust minqa]; };
EDASeq = derive { name="EDASeq"; version="2.3.0"; sha256="1myqbcgyah325yh04cb70bgrqpwgikdkda77m4g5g5zn570s6bd3"; depends=[aroma_light Biobase BiocGenerics DESeq IRanges Rsamtools ShortRead]; };
EDASeq = derive { name="EDASeq"; version="2.3.2"; sha256="0l1mmpy71pqqmqnx4xxn1v0kvsk0cfik98qszczh1ag8wyi1ky3m"; depends=[AnnotationDbi aroma_light Biobase BiocGenerics biomaRt Biostrings DESeq GenomicFeatures GenomicRanges IRanges Rsamtools ShortRead]; };
EDDA = derive { name="EDDA"; version="1.7.0"; sha256="0dyyhnc9v232njqnrcaq78g2m1qws30qcf6bsswq2di235ymk2g0"; depends=[baySeq DESeq edgeR Rcpp ROCR snow]; };
ELBOW = derive { name="ELBOW"; version="1.5.0"; sha256="0lnc5hw2x4p9yd561w9dwplf7q2slcaghxsh5796bmyxjxhxanpy"; depends=[]; };
ELMER = derive { name="ELMER"; version="0.99.8"; sha256="1xvl12f8wmwc8crdl810vkszgxik649w0km581jvpy1azr6z2vjk"; depends=[GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges minfi reshape S4Vectors]; };
ELMER = derive { name="ELMER"; version="1.00.0"; sha256="1kb7rixq02cc0cwm52acji69p89jq07zsagg7a8qva6gshs94k86"; depends=[GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra IRanges minfi reshape S4Vectors]; };
EMDomics = derive { name="EMDomics"; version="1.1.0"; sha256="1i2dy2vqig0lkd13xy4yfwq58zyjiqavpmcvg6pvkh2l48ap1jds"; depends=[BiocParallel emdist ggplot2 matrixStats]; };
ENCODExplorer = derive { name="ENCODExplorer"; version="1.1.3"; sha256="054cm1ldas26gv4xn16w3i25kykwnikj4s83g7sxxdij93m5rmlb"; depends=[jsonlite RSQLite]; };
ENVISIONQuery = derive { name="ENVISIONQuery"; version="1.17.0"; sha256="1dnlw62hwysij63yc856c2sncgfwdq0rpmcds6i6wigdcfd21w8q"; depends=[rJava XML]; };
ENmix = derive { name="ENmix"; version="1.1.4"; sha256="1pcbklxcfnfqwlfwax9n8aql2gaak596gph4xqq5xf64mj5f4qqv"; depends=[Biobase doParallel foreach geneplotter MASS minfi preprocessCore sva wateRmelon]; };
ENmix = derive { name="ENmix"; version="1.1.6"; sha256="069dniqyg0pljbwnl24bv5kfdh5v2j9vbvyxc127ag1isggh9m7b"; depends=[Biobase doParallel foreach geneplotter impute MASS minfi preprocessCore sva wateRmelon]; };
EasyqpcR = derive { name="EasyqpcR"; version="1.11.1"; sha256="0s2jyg6b14wbyl0c1n89c7bi7p88g7s1rz8d830p9hh2x75ly6zj"; depends=[gWidgetsRGtk2 matrixStats plotrix plyr]; };
EnrichmentBrowser = derive { name="EnrichmentBrowser"; version="1.3.0"; sha256="1a6w3drh5x20wvxpx1cb5q2h9k6jh65v9hh81924lcp4baplpx31"; depends=[Biobase graph KEGGgraph KEGGREST limma MASS mixtools neaGUI qvalue RColorBrewer Rgraphviz safe SPIA stringr]; };
ExiMiR = derive { name="ExiMiR"; version="2.11.0"; sha256="1gmfrn3jq4pz5wmijywhxr0kx79534fhrfnqyhjmqq3s9sjn2cbh"; depends=[affy affyio Biobase limma preprocessCore]; };
ExpressionView = derive { name="ExpressionView"; version="1.21.0"; sha256="026w9f119j26c1078nwg4rhfc54wlb3i56iy8bi0cjpvbm4p698f"; depends=[AnnotationDbi bitops caTools eisa isa2]; };
FEM = derive { name="FEM"; version="2.3.0"; sha256="112mmah33ar36cpqjwanrfyhdwjfympnvmxwirxbbnk0nfp9cvpr"; depends=[AnnotationDbi corrplot igraph impute limma marray Matrix]; };
FGNet = derive { name="FGNet"; version="3.3.2"; sha256="000s0f6wki96w5di3gxhn70iwyrnwj5359s3a5ns2a0z0qnr05ww"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; };
FGNet = derive { name="FGNet"; version="3.3.3"; sha256="026spxqdwwz4654fv4k6lhafckfkiqcryr3az0kcfnn6fzaji2g9"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; };
FISHalyseR = derive { name="FISHalyseR"; version="1.3.0"; sha256="0xnmww7ldyxghq7mfjc3zhx1qahskmny3088ar0mj9v4iz4a987q"; depends=[abind EBImage]; };
FRGEpistasis = derive { name="FRGEpistasis"; version="1.5.0"; sha256="1vvcphgirvghzjvic5yq6nl229ryc0y4kp5qd25kgspbcgblg01q"; depends=[fda MASS]; };
FlowRepositoryR = derive { name="FlowRepositoryR"; version="1.1.1"; sha256="1xxljbdbvxg1dbm82r86frw2bskmfrl6rv98xz0z4jfc0w4ag3pd"; depends=[RCurl XML]; };
FlowSOM = derive { name="FlowSOM"; version="1.1.0"; sha256="0k5pw46dbhm6nssr5szj251v3479xgky2iipihrdvp5lr5lhxilq"; depends=[BiocGenerics ConsensusClusterPlus flowCore igraph tsne]; };
FourCSeq = derive { name="FourCSeq"; version="1.3.3"; sha256="1zny041wfg4c9cfdx0kr3a5nsl48zn6fccb8dixp4q61nm621zra"; depends=[Biobase Biostrings DESeq2 fda GenomicAlignments GenomicRanges ggbio ggplot2 gtools LSD Matrix reshape2 Rsamtools rtracklayer SummarizedExperiment]; };
FourCSeq = derive { name="FourCSeq"; version="1.3.4"; sha256="1csxfr23b3g1k54h4ksnhg7c7d6aw28v32lrrqyq7x7xls9cx2lg"; depends=[Biobase Biostrings DESeq2 fda GenomicAlignments GenomicRanges ggbio ggplot2 gtools LSD Matrix reshape2 Rsamtools rtracklayer SummarizedExperiment]; };
FunciSNP = derive { name="FunciSNP"; version="1.11.0"; sha256="19kl14yzqr59ngrd5ygr858zbvx23rihlr4vw5bfdy9cgwlvlzab"; depends=[AnnotationDbi ChIPpeakAnno GenomicRanges ggplot2 IRanges plyr reshape Rsamtools rtracklayer scales snpStats VariantAnnotation]; };
GENE_E = derive { name="GENE.E"; version="1.9.0"; sha256="10c9mw9f619z2ai43qvagj7p1lsqpv90z8vzsyyxym614lvlqfzm"; depends=[RCurl rhdf5]; };
GENESIS = derive { name="GENESIS"; version="1.1.0"; sha256="01d3yc5rc4y22znr7zf980m458qvnmjxpml353k7bkwyz6xyn0fj"; depends=[GWASTools]; };
@ -189,25 +190,25 @@ GEOmetadb = derive { name="GEOmetadb"; version="1.29.0"; sha256="1s9x3dbh61xisk5
GEOquery = derive { name="GEOquery"; version="2.35.4"; sha256="1ny592c1s36a1hkgaqqyss65c190bw5612l23qc9y9qhf4sarq38"; depends=[Biobase RCurl XML]; };
GEOsubmission = derive { name="GEOsubmission"; version="1.21.0"; sha256="1rr8k4myw7jibibclphj63hp4byk3v0cg37vnyc5b0iacdp8s9gn"; depends=[affy Biobase]; };
GEWIST = derive { name="GEWIST"; version="1.13.0"; sha256="1mlzyjggv0rh9xk9pifshhdri3vapvzk2h47g75wx57yfapamcwn"; depends=[car]; };
GGBase = derive { name="GGBase"; version="3.31.1"; sha256="0nyq5rv5mfvvh2h9f1d7b5agwhjagpzjgfm8x0bwpdbz6k691glx"; depends=[AnnotationDbi Biobase BiocGenerics digest genefilter GenomicRanges IRanges limma Matrix S4Vectors snpStats SummarizedExperiment]; };
GGtools = derive { name="GGtools"; version="5.5.1"; sha256="0r16yc6j68baf7pl3f708ys745px6qgpgbvcjiqqg7vgcj4qyq0h"; depends=[AnnotationDbi biglm Biobase BiocGenerics Biostrings bit data_table ff GenomeInfoDb GenomicRanges GGBase ggplot2 Gviz hexbin IRanges iterators reshape2 ROCR Rsamtools rtracklayer S4Vectors snpStats VariantAnnotation]; };
GGBase = derive { name="GGBase"; version="3.31.2"; sha256="0xbkj7dr7xaq3pj4jph5ii78c4ax5b0p6jqmvkv2hr3j70qk3mh2"; depends=[AnnotationDbi Biobase BiocGenerics digest genefilter GenomicRanges IRanges limma Matrix S4Vectors snpStats SummarizedExperiment]; };
GGtools = derive { name="GGtools"; version="5.5.2"; sha256="13zgfribckaxp2gl15fg1bds9rw9ysbf87mhzxm8qh1rqgkf8rbn"; depends=[AnnotationDbi biglm Biobase BiocGenerics Biostrings bit data_table ff GenomeInfoDb GenomicRanges GGBase ggplot2 Gviz hexbin IRanges iterators reshape2 ROCR Rsamtools rtracklayer S4Vectors snpStats VariantAnnotation]; };
GLAD = derive { name="GLAD"; version="2.33.0"; sha256="19db59ry832vrbk86p1bppr52mwri2pz8iwx5ibg18pxr7pw6jw7"; depends=[]; };
GOFunction = derive { name="GOFunction"; version="1.17.0"; sha256="0scjk4zlfrqv3z6ii0bvmhj3d880xyc2p5f4hqmfqn6cml0d6ncj"; depends=[AnnotationDbi Biobase graph Rgraphviz SparseM]; };
GOSemSim = derive { name="GOSemSim"; version="1.27.3"; sha256="0d57my1zmlfsx1d1i55q82s4vzz6v7a7q8h8fkxxzs7wl8pjk5jh"; depends=[AnnotationDbi Rcpp]; };
GOSemSim = derive { name="GOSemSim"; version="1.27.4"; sha256="0czg7qincsv001caqsswyz94hzj0ykjy1qhva9rg5zhpfjwdahwq"; depends=[AnnotationDbi Rcpp]; };
GOSim = derive { name="GOSim"; version="1.7.0"; sha256="0dzx6nnd8p4p5v5rsmbpw6wl0i1jq3n4s0qc8z4xnp2n2757r2z4"; depends=[annotate AnnotationDbi cluster corpcor flexmix graph Matrix RBGL Rcpp topGO]; };
GOTHiC = derive { name="GOTHiC"; version="1.5.2"; sha256="1jxg3hfyy96nwgmpk4ivl2wp3i050n7zahbawiz6d8f2hxcv44zg"; depends=[BiocGenerics Biostrings BSgenome data_table GenomicRanges ggplot2 IRanges rtracklayer S4Vectors ShortRead]; };
GOexpress = derive { name="GOexpress"; version="1.3.1"; sha256="0wqip9ibzjy73b431wlifb6c01c397wkl7nldpj3mvd25s73p102"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer stringr VennDiagram]; };
GOTHiC = derive { name="GOTHiC"; version="1.5.4"; sha256="15kn6v7q3n188zp2vmkqc3kzxf9645zycl47fr5qw9x6ymqhngbp"; depends=[BiocGenerics Biostrings BSgenome data_table GenomicRanges ggplot2 IRanges rtracklayer S4Vectors ShortRead]; };
GOexpress = derive { name="GOexpress"; version="1.3.2"; sha256="151hqhyjaq3ggigibw8fc1zb09578p69ih09rj3irf0avpai6rbi"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer stringr VennDiagram]; };
GOstats = derive { name="GOstats"; version="2.35.1"; sha256="1almz6gc2xm3njz8pjvynpnniz7xdd8z5293cfvx91v11lz70v7f"; depends=[annotate AnnotationDbi AnnotationForge Biobase Category graph RBGL]; };
GOsummaries = derive { name="GOsummaries"; version="2.3.0"; sha256="09c4grz9ljwrz37yv9k6gna9zxk708vxfz2190xz7za0mrql1k3k"; depends=[ggplot2 gProfileR gtable limma plyr Rcpp reshape2]; };
GRENITS = derive { name="GRENITS"; version="1.21.0"; sha256="1lm0074dw0248vyj9wl99if489dx38ia8wscx61842jyi4qz7r2q"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; };
GSAR = derive { name="GSAR"; version="1.3.0"; sha256="1mf7v3v7arcrkx1207wsr0ajjqk8ipq2j9fdd6677ard7xvdj6zl"; depends=[igraph]; };
GSAR = derive { name="GSAR"; version="1.3.2"; sha256="0fqv6lwi94ibwjjv6g0qmc8plc0ghszvjpd73m88080jiaw44yfl"; depends=[igraph]; };
GSCA = derive { name="GSCA"; version="1.7.0"; sha256="1hv9r59fx1hbjnga26shb8crxji1bzmzjmwfbk1wrlm8dsikjnyg"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; };
GSEABase = derive { name="GSEABase"; version="1.31.3"; sha256="1jq3s3pha624gns7d7yf8qqgzq0fm3qgjrkwdkxgbpc7b09baiz0"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; };
GSEAlm = derive { name="GSEAlm"; version="1.29.0"; sha256="13ixp6vq9g9ag5rndc40gw64vny70zcj6lll7r7vz06p5i9b6kyk"; depends=[Biobase]; };
GSRI = derive { name="GSRI"; version="2.17.0"; sha256="158dipqi9mh79d42pv5qsa1gwxz660kl474rdnkd59rnxh7ziyf3"; depends=[Biobase fdrtool genefilter GSEABase les]; };
GSReg = derive { name="GSReg"; version="1.3.0"; sha256="07s60j68i1r64y8x8r1r9s6w020n41137cf2aj9hrsw6gn4ajh15"; depends=[]; };
GSVA = derive { name="GSVA"; version="1.17.0"; sha256="0rk1srk95qia5ap69c2lysgv7r8qh50f50v9b569d2v2vjb0hpq5"; depends=[Biobase BiocGenerics GSEABase]; };
GWASTools = derive { name="GWASTools"; version="1.15.8"; sha256="1rbpvscz7ghssxan02xs14cx7x69wi7vydai9q6ljl7nkazh4hgj"; depends=[Biobase DBI DNAcopy gdsfmt GWASExactHW lmtest logistf ncdf quantsmooth RSQLite sandwich survival]; };
GWASTools = derive { name="GWASTools"; version="1.15.12"; sha256="04k5grfbrcpwnxxpirzb7x9488q8sq19lg00yn4mhpr7y1znrmpc"; depends=[Biobase DBI DNAcopy gdsfmt GWASExactHW lmtest logistf ncdf quantsmooth RSQLite sandwich survival]; };
GeneAnswers = derive { name="GeneAnswers"; version="2.11.1"; sha256="15rf8syxhj3332d7f4jkvyby05r3iia7p1ryz1zv629waz6mr4nh"; depends=[annotate Biobase downloader Heatplus igraph MASS RBGL RColorBrewer RCurl RSQLite XML]; };
GeneExpressionSignature = derive { name="GeneExpressionSignature"; version="1.15.0"; sha256="0wni584412af8a2wzk5r8nf63grw86d6fk74cmwksirw2734mmqs"; depends=[Biobase PGSEA]; };
GeneGA = derive { name="GeneGA"; version="1.19.0"; sha256="0irfr4q55rda8acchgcqsksh6ija87fryj822nb3d4zklv9raqfv"; depends=[hash seqinr]; };
@ -221,12 +222,12 @@ GeneticsDesign = derive { name="GeneticsDesign"; version="1.37.0"; sha256="08awf
GeneticsPed = derive { name="GeneticsPed"; version="1.31.0"; sha256="17fs4gvirji3qp9ik480jpz6qrbq209sjhn57ipkaafvx7rw5j4i"; depends=[gdata genetics MASS]; };
GenoView = derive { name="GenoView"; version="1.3.0"; sha256="09k9xjmx3qmsfr3a4vrfgs73r0xsymf5m4gl0zjjk4cnfk7bs41v"; depends=[biovizBase GenomicRanges ggbio ggplot2 gridExtra]; };
GenomeGraphs = derive { name="GenomeGraphs"; version="1.29.0"; sha256="0kl2gapg7hnl4zfsamb3vwmj7z0vag7vd8viwh0pwqj0pd45dswa"; depends=[biomaRt]; };
GenomeInfoDb = derive { name="GenomeInfoDb"; version="1.5.7"; sha256="1hk3q4wr87wflrcqrpdng70d42irf3v4i6av224pqq3h33j0iwpc"; depends=[BiocGenerics IRanges S4Vectors]; };
GenomicAlignments = derive { name="GenomicAlignments"; version="1.5.9"; sha256="15zwx5z54cr3ix55m70682n1xxfbbx92z3m0qr7srsn8q9ycc8kj"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; };
GenomeInfoDb = derive { name="GenomeInfoDb"; version="1.5.8"; sha256="0kdz1mkn3ljwxcz6v0np7gbb7b7sqxfj80sxrah3bnck2bzg1yra"; depends=[BiocGenerics IRanges S4Vectors]; };
GenomicAlignments = derive { name="GenomicAlignments"; version="1.5.11"; sha256="1w4wmxcyj0ja9nkn35n5qhhax0b7sh4pjxk2hib71323y80mxlld"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; };
GenomicFeatures = derive { name="GenomicFeatures"; version="1.21.13"; sha256="1swk94rqpvfysr3x1r61ypq9vlw1ryc0iw0x6dazfjjchaln0h07"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors]; };
GenomicFiles = derive { name="GenomicFiles"; version="1.5.3"; sha256="03iq136ff0dymfnwyizq9zyzr3smahwp8p6ifc7yf1hwd0nql3wa"; depends=[BiocGenerics BiocParallel GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; };
GenomicInteractions = derive { name="GenomicInteractions"; version="1.3.3"; sha256="0z5c8n0xnyxrdhvffyx8mnpj2qhclknn1gjn3ikmw9cprzlbcb6n"; depends=[BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra igraph IRanges plotrix Rsamtools rtracklayer S4Vectors stringr]; };
GenomicRanges = derive { name="GenomicRanges"; version="1.21.15"; sha256="0sjv8b6vhqpg54v83zkai57xmx0axq7khr35l89b4rc3qd9i8k5c"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; };
GenomicFiles = derive { name="GenomicFiles"; version="1.5.4"; sha256="13lglgxkqsxgi453dk56ry7amnv6lyddy74fnhhsqinj5ip9k3vw"; depends=[BiocGenerics BiocParallel GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; };
GenomicInteractions = derive { name="GenomicInteractions"; version="1.3.4"; sha256="1dh9l0abwfc9dkznvpnzsxlggifvh8zfcmb22mc36lnkq42r033d"; depends=[BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra igraph IRanges plotrix Rsamtools rtracklayer S4Vectors stringr]; };
GenomicRanges = derive { name="GenomicRanges"; version="1.21.16"; sha256="11s14ikk2pj3hycanyjv6s1pild3987gfvf4vnzm6a6ilmqsyqzy"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; };
GenomicTuples = derive { name="GenomicTuples"; version="1.3.1"; sha256="0i91qs1c84lyh0irhgnbnnvag0j3f48gfxxndk5x0yjf9kpa0hca"; depends=[Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; };
Genominator = derive { name="Genominator"; version="1.23.0"; sha256="03pacbd3d5q7ykrflg258zcf8yfzm8kc976aw3d38q7agkia69h2"; depends=[BiocGenerics DBI GenomeGraphs IRanges RSQLite]; };
GlobalAncova = derive { name="GlobalAncova"; version="3.37.0"; sha256="1j35r39plsxlkla2bv7wvg0if5gs2mfy71g6zb65g6ml5cqws45r"; depends=[annotate AnnotationDbi corpcor globaltest]; };
@ -235,7 +236,7 @@ GraphAT = derive { name="GraphAT"; version="1.41.0"; sha256="1mjd54zy4l7ivy347zn
GraphAlignment = derive { name="GraphAlignment"; version="1.33.0"; sha256="14zxbw8cj12wr6c2a0a6mfskr9sqf6cdfyz0ccbzy91d1lnrxzdf"; depends=[]; };
GraphPAC = derive { name="GraphPAC"; version="1.11.0"; sha256="1p0rkc1qz0yf0lxyjfvrpd7nqky855kmhb1pdwxg3ckifnypw5mc"; depends=[igraph iPAC RMallow TSP]; };
GreyListChIP = derive { name="GreyListChIP"; version="1.1.1"; sha256="0kbl9m37aiyv6yrqg4z352k7dpdpxm7yywymjfa9gdd0rv1cy401"; depends=[BSgenome GenomeInfoDb GenomicAlignments GenomicRanges MASS Rsamtools rtracklayer]; };
Gviz = derive { name="Gviz"; version="1.13.2"; sha256="0na13x76dlnddiijxigr4j75xb9dcg32j0gbkqkzjak9azp8szys"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; };
Gviz = derive { name="Gviz"; version="1.13.3"; sha256="0qbad4r0k7j1z4gg785iv57azp9ljlxv5jngnk9kfif05rd3k7v3"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; };
HCsnip = derive { name="HCsnip"; version="1.9.0"; sha256="14f881v776xn8lw4lvjc26s72laxs9zph902875f76ykbzygayd9"; depends=[Biobase clusterRepro coin fpc impute randomForestSRC sigaR sm survival]; };
HDTD = derive { name="HDTD"; version="1.3.2"; sha256="19kzd1sjl0riwisdbrsy9j2pd39lpxwmizrnnj65hrfv6dwaqsgq"; depends=[]; };
HELP = derive { name="HELP"; version="1.27.0"; sha256="1n2fj316ha2l941biyr9d56pry6n39drwa820rgyrwd116rzx79d"; depends=[Biobase]; };
@ -248,14 +249,16 @@ HTSeqGenie = derive { name="HTSeqGenie"; version="3.19.0"; sha256="0i9h6qn2fpcp6
HTqPCR = derive { name="HTqPCR"; version="1.23.0"; sha256="0zp7jbnh5zbrqaq84q1146sb3qg8n0kz6m9v5mi8a9l2fcvg2q09"; depends=[affy Biobase gplots limma RColorBrewer]; };
Harshlight = derive { name="Harshlight"; version="1.41.0"; sha256="12wpfg785dfn5gwp014dfzk9x8zqvr9qrrs0pq32by576knida5z"; depends=[affy altcdfenvs Biobase]; };
Heatplus = derive { name="Heatplus"; version="2.15.1"; sha256="1jcrajxvll0hhrsq8qvvyc1sj1nd3dm06n8q25qi9nacnfi865y7"; depends=[]; };
HiTC = derive { name="HiTC"; version="1.13.1"; sha256="0mhfrxhfd11218pw6yn0l7dn3x5k90s07k53h1gj1j93i64gzzxg"; depends=[Biostrings GenomicRanges IRanges Matrix RColorBrewer rtracklayer]; };
HiTC = derive { name="HiTC"; version="1.13.2"; sha256="1bkd680n81cd7sdji6gjjljxhlbsrdgn5hwpmi37i83hnryfgf5x"; depends=[Biostrings GenomeInfoDb GenomicRanges IRanges Matrix RColorBrewer rtracklayer]; };
HilbertVis = derive { name="HilbertVis"; version="1.27.0"; sha256="1qcyzn86v0xhb9zc1vcia1n53i33sgncbb7lpink5llmjpalacq6"; depends=[lattice]; };
HilbertVisGUI = derive { name="HilbertVisGUI"; version="1.27.0"; sha256="03jxn398xv97mmvbpl0qymmydhm4i4c36qnw4s22ch7wy3h9x6h8"; depends=[HilbertVis]; };
HybridMTest = derive { name="HybridMTest"; version="1.13.0"; sha256="0r4j8yllxzwn5r2rvpkqx6w23836lmly8wlshib6p917ky0djw4s"; depends=[Biobase fdrtool MASS survival]; };
IMPCdata = derive { name="IMPCdata"; version="1.3.0"; sha256="003qvf47bcfcwxkw7zpzdvpnw7xhd2y12n9by2b1ns5i5jka754b"; depends=[rjson]; };
INPower = derive { name="INPower"; version="1.5.0"; sha256="0msz24bixp7b5a83n40675xq8fglrhbg8972a93x2k8jgb5gdh38"; depends=[mvtnorm]; };
INSPEcT = derive { name="INSPEcT"; version="0.99.8"; sha256="0pzh0xkh4py6rwnjqz4wqfnk2h08dp5q9gc4cgxls6gl3574i9ny"; depends=[Biobase BiocParallel deSolve GenomicFeatures GenomicRanges IRanges preprocessCore pROC rootSolve]; };
IONiseR = derive { name="IONiseR"; version="0.99.6"; sha256="1fzp7ncznqw7pmb4sh1qphrk0ham1158q71kiylggbm88wlisky3"; depends=[BiocGenerics Biostrings data_table dplyr ggplot2 magrittr rhdf5 ShortRead tidyr XVector]; };
IPPD = derive { name="IPPD"; version="1.17.0"; sha256="0afhz5ishr1my9gnksa4dl92lfnb2fnvdpsh3n7kj4j2s8xx0crc"; depends=[bitops digest MASS Matrix XML]; };
IRanges = derive { name="IRanges"; version="2.3.11"; sha256="06914mn3x097km2i4p8z4zj99msr1dvlqk50ari1djcnww0im251"; depends=[BiocGenerics S4Vectors]; };
IRanges = derive { name="IRanges"; version="2.3.14"; sha256="0pg6zbdhhpk7h64nma9zrdjxvfk2nwad9b9x8y1qnkki8917a1xd"; depends=[BiocGenerics S4Vectors]; };
ITALICS = derive { name="ITALICS"; version="2.29.0"; sha256="16l0wq7bxi3nz8f5hggnzddhg07vrcca480ygvmi03cxajxbjr9h"; depends=[affxparser DBI GLAD oligo oligoClasses]; };
IVAS = derive { name="IVAS"; version="1.1.0"; sha256="15jnmi40bsnyf5yw86gvqppv0g8250lsi74gsjzhm7gijhlxfnrm"; depends=[AnnotationDbi BiocGenerics doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges lme4 Matrix S4Vectors]; };
Icens = derive { name="Icens"; version="1.41.0"; sha256="1vi2hnzs8z5prggswa6wzr2y53jczkgg09f4vw0pjzkzi7p8bphy"; depends=[survival]; };
@ -276,7 +279,7 @@ LPEadj = derive { name="LPEadj"; version="1.29.0"; sha256="1734ihzvid5bz2wyh7ysk
LVSmiRNA = derive { name="LVSmiRNA"; version="1.19.0"; sha256="1z74y8zbg5amsmslb309gi630v8qa1qqgj37214bv5g9ab8xajmj"; depends=[affy Biobase BiocGenerics limma MASS quantreg SparseM vsn zlibbioc]; };
LiquidAssociation = derive { name="LiquidAssociation"; version="1.23.0"; sha256="178gx8n0ga1ppjk368xacidms1rc2kn301fmdc8rwbcknwvxrwck"; depends=[Biobase geepack]; };
LowMACA = derive { name="LowMACA"; version="1.1.0"; sha256="0i0pka0jf1yq7vjw1kb9sd2p21gpy4pw855ap815k02i0n7jyny4"; depends=[Biostrings cgdsr data_table motifStack RColorBrewer reshape2 stringr]; };
M3D = derive { name="M3D"; version="1.3.4"; sha256="0yyhfs8frvyx0dk0k61a4xggqdrspx07jxhhl9q7bld026bv8d9d"; depends=[BiSeq GenomicRanges IRanges]; };
M3D = derive { name="M3D"; version="1.3.5"; sha256="1pjfl0kdhzw9l59qzgxjkf60w0rjdswm8wc12cyk39190hnalh49"; depends=[BiSeq GenomicRanges IRanges]; };
MAIT = derive { name="MAIT"; version="1.3.1"; sha256="1kpcns5f9j41sg5694ng4d0w5gil2qwi9s1804gncnnh273jsv5z"; depends=[agricolae CAMERA caret class e1071 gplots MASS pls plsgenomics Rcpp xcms]; };
MANOR = derive { name="MANOR"; version="1.41.1"; sha256="0i1fk4c72k91i0w84b0swgdbd4igvbcrbcs12dqqxcslnqg44rs2"; depends=[GLAD]; };
MBASED = derive { name="MBASED"; version="1.3.1"; sha256="0rdsv7qv5x6whb5jx4wzgcv88z6hwmf5ryz84liv7kg1i1pq1adn"; depends=[BiocGenerics BiocParallel GenomicRanges RUnit SummarizedExperiment]; };
@ -287,8 +290,8 @@ MEDIPS = derive { name="MEDIPS"; version="1.19.2"; sha256="1k4bdvqsp9rrxadz79g4j
MEDME = derive { name="MEDME"; version="1.29.0"; sha256="1fpi4ri134ii28nfiq2p875xinwvs8icrxvw158g5k7ixy1zx826"; depends=[Biostrings drc MASS]; };
MEIGOR = derive { name="MEIGOR"; version="1.3.0"; sha256="1kif7m78w0w0qv4fqfby3rknqk56zk83dds3cm4pgv2cii61i9jy"; depends=[CNORode deSolve Rsolnp snowfall]; };
MGFM = derive { name="MGFM"; version="1.3.0"; sha256="1h2bi2cchfxl0z31pgj6q6pb1jnmqvjy7jv2khp80h7sdr65356i"; depends=[annotate AnnotationDbi]; };
MIMOSA = derive { name="MIMOSA"; version="1.7.0"; sha256="0kw2f3gk0fxfv393gh2mlnw4hy658j6ga20rhkbza1hzyyz44mvk"; depends=[Biobase coda data_table Formula ggplot2 Kmisc MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape scales testthat]; };
MLInterfaces = derive { name="MLInterfaces"; version="1.49.0"; sha256="0h5pr3lkgr6wb2h8dik2p4zv62p1hx22anxsbzbxsd4k4n9yzxd4"; depends=[annotate Biobase BiocGenerics cluster gdata genefilter MASS pls rda rpart sfsmisc]; };
MIMOSA = derive { name="MIMOSA"; version="1.7.1"; sha256="1gzm90ii18vvpfd2nnl34mcvbvi49ck4hd7c5yziac8m3gx2f9f2"; depends=[Biobase coda data_table Formula ggplot2 Kmisc MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape scales testthat]; };
MLInterfaces = derive { name="MLInterfaces"; version="1.49.3"; sha256="1c7l9xwyx72hmv4rs24xm4bzj3lzaaj0ax71yw1p008rkgj8ifxz"; depends=[annotate Biobase BiocGenerics cluster fpc gdata genefilter ggvis htmltools MASS pls rda rpart sfsmisc shiny]; };
MLP = derive { name="MLP"; version="1.17.0"; sha256="1wb6bzxn1paba2fxh62ldsfr4kr0nq2sy21v0pp0qwhfxndyzpdn"; depends=[affy AnnotationDbi gdata gmodels gplots gtools plotrix]; };
MLSeq = derive { name="MLSeq"; version="1.7.0"; sha256="0vc5rz4l574hmzwn3q7c4giib0lzs720j0j3alvarb3lmfzx9mhq"; depends=[Biobase caret DESeq2 edgeR limma randomForest]; };
MMDiff = derive { name="MMDiff"; version="1.9.0"; sha256="0xvnv024cv540m0jv9lrb4s5rvc0mq4gwp6wvdgpnsnqnwi9j556"; depends=[Biobase DiffBind GenomicRanges GMD IRanges Rsamtools]; };
@ -296,7 +299,7 @@ MPFE = derive { name="MPFE"; version="1.5.0"; sha256="123a6qg761j46bs1ckd6yyr2ig
MSGFgui = derive { name="MSGFgui"; version="1.3.0"; sha256="0r7izs3wpd7l9agrm3mrr3kmm00s9fzljsjxhk4pzxkjg1ran4hp"; depends=[MSGFplus mzID mzR shiny shinyFiles xlsx]; };
MSGFplus = derive { name="MSGFplus"; version="1.3.0"; sha256="0q75mygrd56kr9hrrxlmckkgvhcrgvpgvbjdxjmz6jaqp5wfbkf5"; depends=[mzID]; };
MSnID = derive { name="MSnID"; version="1.3.1"; sha256="0a0r2ikyb0spm110xzn3zzhl8g6xsvmh781d65f10l1iqnd2cqza"; depends=[Biobase data_table doParallel foreach iterators MSnbase mzID ProtGenerics R_cache Rcpp reshape2]; };
MSnbase = derive { name="MSnbase"; version="1.17.4"; sha256="0ig62281xic977br9ddibcafrad2cwc49cqs7vz5i3gg9nf46iby"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant mzID mzR pcaMethods plyr preprocessCore ProtGenerics Rcpp reshape2 S4Vectors vsn]; };
MSnbase = derive { name="MSnbase"; version="1.17.11"; sha256="1yrzmanv87rpahpqg40vqx23baahq41w3j7zag8chygr2xhxkjxy"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant mzID mzR pcaMethods plyr preprocessCore ProtGenerics Rcpp reshape2 S4Vectors vsn]; };
MSstats = derive { name="MSstats"; version="2.7.0"; sha256="0zhv2c769biv6avb4csi7alabk76bfn0ykzwp0lc6ymzggbj9pil"; depends=[ggplot2 gplots limma lme4 marray MSnbase preprocessCore Rcpp reshape]; };
MVCClass = derive { name="MVCClass"; version="1.43.0"; sha256="1mbhfkvdkxw9xd76dd2pxk947w9wahwdsk9x1wcryrmwcdvaqqcz"; depends=[]; };
MantelCorr = derive { name="MantelCorr"; version="1.39.0"; sha256="0l255m63q9idv56svs5m5bc4izwqnm3jy2z3kka7sw4xcx13l39g"; depends=[]; };
@ -312,12 +315,12 @@ MethTargetedNGS = derive { name="MethTargetedNGS"; version="1.1.0"; sha256="0bsp
MethylAid = derive { name="MethylAid"; version="1.3.1"; sha256="012ypjnw5ky6233dibx2hpryzbr66g86hm14cjfd45fzr08bv08z"; depends=[Biobase BiocGenerics BiocParallel ggplot2 gridBase hexbin matrixStats minfi RColorBrewer shiny]; };
MethylMix = derive { name="MethylMix"; version="1.3.0"; sha256="181sz3ny79i8gaq3y2k0q56l03ii288lhy8xv1fsh94bjhihjgcd"; depends=[doParallel foreach optimx RColorBrewer RPMM]; };
MethylSeekR = derive { name="MethylSeekR"; version="1.9.0"; sha256="1hp2qadkkkanp3cs0gqwyvn94qy1v34gcjhx730p55iq1had5dcf"; depends=[BSgenome geneplotter GenomicRanges IRanges mhsmm rtracklayer]; };
Mfuzz = derive { name="Mfuzz"; version="2.29.1"; sha256="06xzb670y19ry1fr97xw8j3gcagqnyaxlclscx3w1m2qfss5wi15"; depends=[Biobase e1071 tkWidgets]; };
Mfuzz = derive { name="Mfuzz"; version="2.29.3"; sha256="10qblp4xg6506f1j1v3n0k4m3f5hdrzv2m35szh0xdi2jxlc1m9k"; depends=[Biobase e1071 tkWidgets]; };
MiChip = derive { name="MiChip"; version="1.23.0"; sha256="0np5drks6nfg3aw8qm899syxv1z56608bhav1jid4ks9fwdi33bb"; depends=[Biobase]; };
MiPP = derive { name="MiPP"; version="1.41.0"; sha256="1zp8j123fx82xdc3dvn4a17mspw2pdxxlyj4f750vzwc4ma9pj39"; depends=[Biobase e1071 MASS]; };
MiRaGE = derive { name="MiRaGE"; version="1.11.1"; sha256="1nkvk07kgps9rzh362pczlsq0r7g8b85f4bdbi0ld5p0ijdd02f3"; depends=[AnnotationDbi Biobase BiocGenerics]; };
MineICA = derive { name="MineICA"; version="1.9.0"; sha256="0gfdnlahsm206vw443ml872dr1k5sg6w9hsdd3gkwzm0lsrxqd7x"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi marray mclust plyr RColorBrewer Rgraphviz scales xtable]; };
MinimumDistance = derive { name="MinimumDistance"; version="1.13.2"; sha256="09rpwh75gdn5s5i4vd3nk97ns04q7vfspbm7r0mjjrjnidd0fxlf"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; };
MinimumDistance = derive { name="MinimumDistance"; version="1.13.3"; sha256="1aha0ab1ki0ab6yaflqmjr19igkaqn84rlxk5h5j612y9qv04pvs"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; };
Mirsynergy = derive { name="Mirsynergy"; version="1.5.0"; sha256="0nbdnz3m99r3zlkqqya4xs944a3zy0daqxbnf5gn4033z2kgd10s"; depends=[ggplot2 gridExtra igraph Matrix RColorBrewer reshape scales]; };
MmPalateMiRNA = derive { name="MmPalateMiRNA"; version="1.19.0"; sha256="0pnbzqh90vqcgsh1swvhy8w2k1vj24k5j9m4sb7qwhi2h5y1gzwa"; depends=[Biobase lattice limma statmod vsn xtable]; };
MoPS = derive { name="MoPS"; version="1.3.0"; sha256="0sf7v7clghm48g2ryainsyvsl67nqq4xha71zc1r5w9fz33xa5mv"; depends=[Biobase]; };
@ -331,7 +334,7 @@ NOISeq = derive { name="NOISeq"; version="2.11.1"; sha256="13q3v2jphridbjk1059c4
NTW = derive { name="NTW"; version="1.19.0"; sha256="027rdvy8xpsa70g6x33v4fmzk8gyvd8p3lgf65ac36wcy120gyhl"; depends=[mvtnorm]; };
NanoStringQCPro = derive { name="NanoStringQCPro"; version="1.1.1"; sha256="0mmbbxhxd7nh7mqzckw0as68ac0nv005liif0laadbz49y6p4rwm"; depends=[AnnotationDbi Biobase knitr NMF png RColorBrewer]; };
NarrowPeaks = derive { name="NarrowPeaks"; version="1.13.2"; sha256="0cryjprj8y1fgn5xxzsyyv4zdzv5qy8405qkj47kvjbrk0kbr97s"; depends=[BiocGenerics CSAR fda GenomeInfoDb GenomicRanges ICSNP IRanges S4Vectors]; };
NetPathMiner = derive { name="NetPathMiner"; version="1.5.0"; sha256="0z0bppsvy1zzbx8fspmsgzw7vzf5x649762znaqpfabvy6bpp2xk"; depends=[igraph]; };
NetPathMiner = derive { name="NetPathMiner"; version="1.5.2"; sha256="0k3vq5l95hapw8hbc00m4pchxwzylp97y20w21g0g1yaf1cf9br0"; depends=[igraph]; };
NetSAM = derive { name="NetSAM"; version="1.9.0"; sha256="1bdch37kk1clb8cyffrlcr6d5qykk5a5ql3dfi94bw1l0w6v4fjq"; depends=[graph igraph seriation]; };
NormqPCR = derive { name="NormqPCR"; version="1.15.0"; sha256="0nfjnx5id04nbkda9v66418yzpp88mq2ijsfn8jyg0sfika405nl"; depends=[Biobase qpcR RColorBrewer ReadqPCR]; };
NuPoP = derive { name="NuPoP"; version="1.19.0"; sha256="1dpqmhbwr1l95vgjxlw3xayjxksa909xj05jbf4x3gafnlkkdvbk"; depends=[]; };
@ -342,12 +345,12 @@ OSAT = derive { name="OSAT"; version="1.17.0"; sha256="1ky9xb5ls3xnzinsrxrgggb4r
OTUbase = derive { name="OTUbase"; version="1.19.0"; sha256="0xmp446v57z875lmjkg47f9hx961af9nda658v8qlbjxf1wjw9zb"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; };
OmicCircos = derive { name="OmicCircos"; version="1.7.0"; sha256="1xil5043hgpypaww1a1wvcxw9im9jmzgdp83p3z71giqiq36dvh4"; depends=[GenomicRanges]; };
OmicsMarkeR = derive { name="OmicsMarkeR"; version="1.1.0"; sha256="1fw6zfp5jrkvxjb6j48q3n1fqkm1qmmjjvmr70v93hi5jg0an8gy"; depends=[assertive caret caTools data_table DiscriMiner e1071 foreach gbm glmnet pamr permute plyr randomForest]; };
OncoSimulR = derive { name="OncoSimulR"; version="1.3.2"; sha256="0bm4p5wpp32kd90c7mx76d8iy1jxxfssnkg3wrrglcfi0qqzs404"; depends=[data_table graph Rcpp Rgraphviz]; };
OncoSimulR = derive { name="OncoSimulR"; version="1.99.5"; sha256="0pjn2kirf1b72fvqxjawxcbrsn42brhz09kjnywm611kap329dq2"; depends=[data_table graph gtools igraph Rcpp Rgraphviz]; };
OperaMate = derive { name="OperaMate"; version="0.99.6"; sha256="0xh57d82rmfcs1a6gj0qcjf585drhzns5k69bwxb7x1xw63wp4kp"; depends=[ggplot2 MASS pheatmap RDAVIDWebService]; };
OrderedList = derive { name="OrderedList"; version="1.41.0"; sha256="1cw8y5f5h15z0qwg8n4dq7g3ixx2wa332rdsb4w2qqmcqlz79bfp"; depends=[Biobase twilight]; };
OrganismDbi = derive { name="OrganismDbi"; version="1.11.32"; sha256="15zl741nw38yq07wp8rp5w1jzvyg8cz10dcyirv28rqs9nhz6q7b"; depends=[AnnotationDbi Biobase BiocGenerics BiocInstaller GenomicFeatures GenomicRanges graph IRanges RBGL RSQLite S4Vectors]; };
OrganismDbi = derive { name="OrganismDbi"; version="1.11.42"; sha256="0y0v5ngall7iyvx2bqhfkxdnw9alkyab5f6qgpq8dpvr6pvyamyl"; depends=[AnnotationDbi Biobase BiocGenerics BiocInstaller GenomicFeatures GenomicRanges graph IRanges RBGL RSQLite S4Vectors]; };
OutlierD = derive { name="OutlierD"; version="1.33.0"; sha256="0bljxmrnlqcngzzv6yxjsim7gd4icyi384vimn5gs869mq9gyrj3"; depends=[Biobase quantreg]; };
PAA = derive { name="PAA"; version="1.3.0"; sha256="1786prxxf3yk4zgs8qcrnxf9i7b3dwaq21cj2hsz4xsrnskygcs0"; depends=[e1071 limma MASS mRMRe randomForest Rcpp ROCR sva]; };
PAA = derive { name="PAA"; version="1.3.2"; sha256="1p9900wiy5mmcmwb4l5n8kvsjs3ay6k0k551mpjbwijhk2si7wja"; depends=[e1071 limma MASS mRMRe randomForest Rcpp ROCR sva]; };
PADOG = derive { name="PADOG"; version="1.11.0"; sha256="0x84k32fmd1zrwjc4f71mq4jslh9bxr4gjbl48k1f5kl5j6hlxj3"; depends=[AnnotationDbi Biobase doRNG foreach GSA limma nlme]; };
PANR = derive { name="PANR"; version="1.15.0"; sha256="0nc2a10z7i16dz41yhz3zw9h51myxzxbxd1vpc2d8gczks07n6ch"; depends=[igraph MASS pvclust RedeR]; };
PAPi = derive { name="PAPi"; version="1.9.0"; sha256="1553fxm3ma3p5j10acyk5m2wx4dafp346x0pyxj9aah856h4zkw5"; depends=[KEGGREST svDialogs]; };
@ -370,19 +373,20 @@ PathNet = derive { name="PathNet"; version="1.9.0"; sha256="1dqai2ys5vfhhqqghh1x
Pbase = derive { name="Pbase"; version="0.9.0"; sha256="1j0b2ajlsk42kxakh4vhcd9ias1fxr4cna4h52hrinxi9jml9ywx"; depends=[Biobase BiocGenerics biomaRt Biostrings cleaver GenomicRanges Gviz IRanges MSnbase mzID mzR Pviz Rcpp rtracklayer S4Vectors]; };
PhenStat = derive { name="PhenStat"; version="2.3.0"; sha256="0irasfwks5w5a25zkp0qhasrk5nvahbijsncfbmpimac5cwps1an"; depends=[car logistf MASS nlme nortest]; };
Polyfit = derive { name="Polyfit"; version="1.3.0"; sha256="0zdd85bshdcf85asq93wbbrj26fa5d6xkmgdyrqg9hawdznj9kip"; depends=[DESeq]; };
Prize = derive { name="Prize"; version="0.99.16"; sha256="0bm93kipmyypqsp17f316k83gwrfpzqjqhlf44kmb5ris5s1fdyb"; depends=[diagram ggplot2 gplots matrixcalc reshape2 stringr]; };
ProCoNA = derive { name="ProCoNA"; version="1.7.0"; sha256="1x2wmlhlizd09v4d7q98cfplqqmxcagi43rl9ibdah04n7k35zpd"; depends=[BiocGenerics flashClust GOstats MSnbase WGCNA]; };
ProtGenerics = derive { name="ProtGenerics"; version="1.1.0"; sha256="1l77j3zl78v86jbxpwnyc0a5q66yds79nirlcvan789hxbggr0i4"; depends=[BiocGenerics]; };
Pviz = derive { name="Pviz"; version="1.3.0"; sha256="0pvmpxw4dpxxs9lrn9nn44rn36r3l09rwlkh5ph054h56nm80xs1"; depends=[Biostrings biovizBase data_table GenomicRanges Gviz IRanges]; };
QDNAseq = derive { name="QDNAseq"; version="1.5.0"; sha256="16qp5r8gl81a4arpb6kac387dnc0ng4vilfv1gfqr4rjkpp0gks2"; depends=[Biobase CGHbase CGHcall DNAcopy matrixStats R_utils Rsamtools]; };
QDNAseq = derive { name="QDNAseq"; version="1.5.1"; sha256="1gykm8r410s9aw75km0f8wnhd0p8gqirszp70g5x97n83r4k6rnq"; depends=[Biobase CGHbase CGHcall DNAcopy matrixStats R_utils Rsamtools]; };
QUALIFIER = derive { name="QUALIFIER"; version="1.13.0"; sha256="0vk3xx0dmxadxk1wmcnf9cxv7rr4z8624npkmdbqlzb6mxix7p6d"; depends=[Biobase data_table flowCore flowViz flowWorkspace hwriter lattice latticeExtra MASS ncdfFlow reshape XML]; };
QuartPAC = derive { name="QuartPAC"; version="1.1.0"; sha256="0w92hggwihp2nia9dzg8yjbfsyrcgwq4kpxh96jb8kkmq6kl2l8p"; depends=[data_table GraphPAC iPAC SpacePAC]; };
QuasR = derive { name="QuasR"; version="1.9.8"; sha256="0ij9lkqld0pkbf6hq731ygzhj1nf864y6rxzys8f4j7g871lbm1w"; depends=[Biobase BiocGenerics BiocInstaller BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rbowtie Rsamtools S4Vectors ShortRead zlibbioc]; };
QuasR = derive { name="QuasR"; version="1.9.9"; sha256="13md1pq0bg9xdlhvwsys3f7ibqll80viica03h2l4cnhgw26zj52"; depends=[Biobase BiocGenerics BiocInstaller BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rbowtie Rsamtools rtracklayer S4Vectors ShortRead zlibbioc]; };
R3CPET = derive { name="R3CPET"; version="1.1.0"; sha256="0vwyrqsihnabzqh5r329v3f5zcg2ik51aakvscpp482z0dm2naqh"; depends=[clues clValid data_table DAVIDQuery GenomicRanges ggbio ggplot2 Hmisc igraph IRanges pheatmap Rcpp reshape2 S4Vectors]; };
R453Plus1Toolbox = derive { name="R453Plus1Toolbox"; version="1.19.1"; sha256="0fp8hx9igfjaj1dvfxs54r5krhsp1hbmlqs9vac3g6ga51268rir"; depends=[Biobase BiocGenerics biomaRt Biostrings BSgenome GenomicRanges IRanges R2HTML Rsamtools S4Vectors ShortRead SummarizedExperiment TeachingDemos VariantAnnotation xtable XVector]; };
RBGL = derive { name="RBGL"; version="1.45.1"; sha256="0y90pvl3i8pyzxwssciygcd1c1lb8a0rqhpiqgif56075amm71rl"; depends=[graph]; };
RBM = derive { name="RBM"; version="1.1.0"; sha256="03q7prkrj8y3k8jrnnbjrkmlyv72cxfa8l042df4wajhcbpa4g4l"; depends=[limma marray]; };
RBioinf = derive { name="RBioinf"; version="1.29.0"; sha256="1cyd18lz3h9b20g6s9azzv9rv9bachh3qsczz84y8lj4kay3qssx"; depends=[graph]; };
RCASPAR = derive { name="RCASPAR"; version="1.15.0"; sha256="16v55gkqg4jaa7wp4g1l536jv74nlcwkir6796zd85byz2c6aaxh"; depends=[]; };
RCASPAR = derive { name="RCASPAR"; version="1.15.1"; sha256="125vrkz5gicizf0acpv0f0ijiky5my7rpfyim25vihcsz5fkb0w1"; depends=[]; };
RCyjs = derive { name="RCyjs"; version="1.1.12"; sha256="1gv31yj0ms7llsg2rca96rh77h1qw3hkjbiskzc3zmpycx5m9m8b"; depends=[BiocGenerics BrowserViz graph httpuv igraph jsonlite Rcpp]; };
RCytoscape = derive { name="RCytoscape"; version="1.19.0"; sha256="0yfmlksi7sz0p9nbgjz2cpqwbwyzzxij3zaqmkp3wqfdk89mxgi7"; depends=[BiocGenerics graph]; };
RDAVIDWebService = derive { name="RDAVIDWebService"; version="1.7.0"; sha256="07hnj7flfacg9j8c6155nw23zjxcb1v4wj4rkfi8xz5clp80v6xh"; depends=[Category ggplot2 GOstats graph RBGL rJava]; };
@ -406,22 +410,23 @@ RTCA = derive { name="RTCA"; version="1.21.0"; sha256="1kpfmrjcwmzgih0vib9ckf4c0
RTCGAToolbox = derive { name="RTCGAToolbox"; version="1.99.4"; sha256="1s78mll5907bpwca0zzhp19p328gwxc88wg98fjk710i0lx67gbi"; depends=[data_table limma RCircos RCurl RJSONIO survival XML]; };
RTN = derive { name="RTN"; version="1.7.2"; sha256="0k0xwnk0vgbi86435m5rhv2sxdnzwmhgr85zb8dlffr68dqa66ih"; depends=[car data_table ff igraph IRanges limma minet RedeR snow]; };
RTopper = derive { name="RTopper"; version="1.15.0"; sha256="1bjrrljidnij9zhq6lqsdi6hr35pih2kwwwd5cgmwfff8nfx60kw"; depends=[Biobase limma multtest]; };
RUVSeq = derive { name="RUVSeq"; version="1.3.0"; sha256="0wi1ydj98l0826sjpm4bfpdklz3735q16vamqzr2b10p3m22xi79"; depends=[EDASeq edgeR MASS]; };
RUVSeq = derive { name="RUVSeq"; version="1.3.2"; sha256="1fbkiqzwxmwwkznl37ak1fkzms5i49n4hlk9s1c0frbw3cg79nqm"; depends=[Biobase EDASeq edgeR MASS]; };
RUVcorr = derive { name="RUVcorr"; version="1.1.0"; sha256="1pgsfm17gnqwa9sr19f15h0nx1fhyjj07yhmpwr7s6p3v46qdw33"; depends=[BiocParallel corrplot gridExtra lattice MASS psych reshape2 snowfall]; };
RUVnormalize = derive { name="RUVnormalize"; version="1.3.0"; sha256="1fqk68rpznz9xc7ricipvrk1anppa33h9m5yv65fjwv4q1d05265"; depends=[Biobase]; };
RWebServices = derive { name="RWebServices"; version="1.33.1"; sha256="1bxp4zj7r1lrxb7r7l32h6b8hdxb1ryf7dxxj0qhwimh7pmxln31"; depends=[RCurl SJava TypeInfo]; };
RamiGO = derive { name="RamiGO"; version="1.15.0"; sha256="1q9f2ii5b1xway407gzfpzz6vm6an8p13vmgkw7vb9rldxn85hab"; depends=[graph gsubfn igraph png RCurl RCytoscape]; };
RankProd = derive { name="RankProd"; version="2.41.0"; sha256="05r8mrgnpfkd7yhcch7nrn9jbapfhvi67h0z9a9nlxlp44mz0qq7"; depends=[]; };
RareVariantVis = derive { name="RareVariantVis"; version="1.0.0"; sha256="09hww69169c225dmi3rmjhv5j2bxq1c773s1q7048rysgv0har5y"; depends=[BiocGenerics GenomeInfoDb GenomicRanges googleVis IRanges S4Vectors SummarizedExperiment VariantAnnotation]; };
Rariant = derive { name="Rariant"; version="1.5.0"; sha256="1xwy2xrdk1m1mscnql8cp3az1jx639a9w4mb8bz7jf62z4z4npsi"; depends=[dplyr exomeCopy GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges reshape2 Rsamtools S4Vectors shiny SomaticSignatures VariantAnnotation VGAM]; };
RbcBook1 = derive { name="RbcBook1"; version="1.37.0"; sha256="03q82zjd725w585rgdn9mbx7ddsv1kdxylsndh26csz573j2myhh"; depends=[Biobase graph rpart]; };
Rbowtie = derive { name="Rbowtie"; version="1.9.0"; sha256="02wc0pzw9vm1mc7y84ic79jjdi1mh77v8h4gk2pl117pdkgg7nl7"; depends=[]; };
Rcade = derive { name="Rcade"; version="1.11.0"; sha256="0dqhir9nkkhga3zll4jv9nc4k2kaggxkks2whfw581k9akj1v7x1"; depends=[baySeq GenomicRanges plotrix rgl Rsamtools S4Vectors]; };
Rchemcpp = derive { name="Rchemcpp"; version="2.7.0"; sha256="0px77l9h4f0kximv7almkyx9lfc67cdvms25mfry5hyv2v2d3qb8"; depends=[ChemmineR Rcpp]; };
Rchemcpp = derive { name="Rchemcpp"; version="2.7.1"; sha256="11kj3x6vlwns6wx6sr4iwhh2fz2ab6205cj48gayc5753lhqi44m"; depends=[ChemmineR Rcpp]; };
RchyOptimyx = derive { name="RchyOptimyx"; version="2.9.0"; sha256="1l84zzd4xpz409gl3d3j5ssddgx3i6ik5hqsdggyvnvf1nb2yavn"; depends=[flowType graph Rgraphviz sfsmisc]; };
Rcpi = derive { name="Rcpi"; version="1.5.0"; sha256="1ap4i41iy9r6xl0dhlry6yz28g5blb057vvddx6ysphaq9gwx6rp"; depends=[Biostrings ChemmineR doParallel fmcsR foreach GOSemSim rcdk RCurl rjson]; };
Rdisop = derive { name="Rdisop"; version="1.29.0"; sha256="0j40i96k6q94c3238gl3z9kp9dxv00133m9s4zx28z17ayz00h69"; depends=[Rcpp RcppClassic]; };
ReQON = derive { name="ReQON"; version="1.15.1"; sha256="147fywvb9f9gjg3ij3sh753fs6mkr9b3f1c9j4gws1hmc6ryyn3m"; depends=[rJava Rsamtools seqbias]; };
ReactomePA = derive { name="ReactomePA"; version="1.13.2"; sha256="0wll3hgf161jyj2pzbybncvikw6idph672s3n048a1fa7nn8abyg"; depends=[AnnotationDbi DOSE graphite igraph]; };
ReactomePA = derive { name="ReactomePA"; version="1.13.3"; sha256="0lpabqivq5yssvmz2nac3c169pz6hs7s9n9h4cams9pif364c9jv"; depends=[AnnotationDbi DOSE graphite igraph]; };
ReadqPCR = derive { name="ReadqPCR"; version="1.15.0"; sha256="063swfh992gmibvr9ffsh65i57fdl651gpc39b2y6k9dp2rx8is7"; depends=[affy Biobase]; };
RedeR = derive { name="RedeR"; version="1.17.0"; sha256="13fmv76jrzxsa1ykzl85zwj0zb3aycyvc5s3h60vlgawfw66z90h"; depends=[igraph RCurl XML]; };
RefNet = derive { name="RefNet"; version="1.5.0"; sha256="0dzkvrpphbajpcwc3gdqi8lmwfg8a3rljhdnwswvbjg2vraj48s2"; depends=[AnnotationHub BiocGenerics IRanges PSICQUIC RCurl shiny]; };
@ -434,32 +439,32 @@ Ringo = derive { name="Ringo"; version="1.33.0"; sha256="12qh3aayy317pzb137ds9vq
Risa = derive { name="Risa"; version="1.11.0"; sha256="1rgyh3yv4ii0xw6ycm0g9b0y6c9nqdq4k8lidmifk0gx835lw7vf"; depends=[affy Biobase biocViews Rcpp xcms]; };
Rmagpie = derive { name="Rmagpie"; version="1.25.0"; sha256="13mb9aaqmwx1ad4mk0fhxqfql8pjpyaiibip7jawiyji7ghp9iw7"; depends=[Biobase e1071 kernlab pamr]; };
RmiR = derive { name="RmiR"; version="1.25.0"; sha256="1xc19w8la239ia793qpnpx2h0aavwhidrjf4i87jry2j29npjfzz"; depends=[DBI RSVGTipsDevice]; };
RnBeads = derive { name="RnBeads"; version="1.1.1"; sha256="1cz26pivf2w57ha03c49nsqnvr93s8s4xqdy2ccdc3rgffvv191g"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr RColorBrewer]; };
RnBeads = derive { name="RnBeads"; version="1.1.3"; sha256="1yd5gmi2vvkqrv384ndsn7qgp8rzjj6d0i4zsgr33avxnah757m2"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr RColorBrewer]; };
RnaSeqSampleSize = derive { name="RnaSeqSampleSize"; version="1.1.0"; sha256="0q2w1yd5p9k3pls6ki8yci3r2v4rxi3iy4zk5mafmr7ip0q1rwpp"; depends=[biomaRt edgeR heatmap3 KEGGREST matlab Rcpp]; };
Rnits = derive { name="Rnits"; version="1.3.0"; sha256="0hxll8hlv5nc6vijznhzmvbjh1hxmfy9shm2g8al291yi0gfdmk3"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; };
Roleswitch = derive { name="Roleswitch"; version="1.7.0"; sha256="01b21yyg0d2v10abcbw08zhswh9nb7wj7s3x5kcaaas7671f06ha"; depends=[Biobase biomaRt Biostrings DBI microRNA plotrix pracma reshape]; };
Rolexa = derive { name="Rolexa"; version="1.25.0"; sha256="1qrf7byimw9s5jp15zmwqk95x34r3yx2npr46gwf1zih06n7kc05"; depends=[Biostrings IRanges mclust ShortRead]; };
RpsiXML = derive { name="RpsiXML"; version="2.11.0"; sha256="0rvma7vynfh5sjhqnbpagilq54dh0wrvvb3jzykwmrak0dbyk7zh"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; };
Rqc = derive { name="Rqc"; version="1.3.0"; sha256="06x637d83qv0g0b833r02andj13ipn7dg9xp3lz1rfv5rc1v9m6v"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings ggplot2 IRanges knitr markdown plyr reshape2 S4Vectors ShortRead]; };
Rsamtools = derive { name="Rsamtools"; version="1.21.8"; sha256="0hv36vmhv37mvn4mqyydyjm3gsfmnizw37jicpb9m2zgc6zgvzha"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges S4Vectors XVector zlibbioc]; };
Rsubread = derive { name="Rsubread"; version="1.19.0"; sha256="1vlv6h84bxl8986vqc0j47jgmyx8zn2fawj2w6r6fbblq3n2gnm0"; depends=[]; };
Rqc = derive { name="Rqc"; version="1.3.1"; sha256="02kc0ki021m4hxhzlmxfrb9p7p2ibdqan5hr9h67vd2dcnp9yaij"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings ggplot2 IRanges knitr markdown plyr reshape2 S4Vectors ShortRead]; };
Rsamtools = derive { name="Rsamtools"; version="1.21.13"; sha256="0fv0a5f1jb8mj3b2qn6bf9vzzpvn8fgrlhxz492rd3ndvvgnabxc"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges S4Vectors XVector zlibbioc]; };
Rsubread = derive { name="Rsubread"; version="1.19.2"; sha256="1xcj13mzw7a8q93kimr61kcl2xvr0mdzvrrqi4j3psbcyf5zn86k"; depends=[]; };
Rtreemix = derive { name="Rtreemix"; version="1.31.0"; sha256="1z08y8qhc3sv4pwvji4pks46hxpcpwb9yx8y0927bc96a8mqgax4"; depends=[Biobase graph Hmisc]; };
S4Vectors = derive { name="S4Vectors"; version="0.7.5"; sha256="0fayn794gwndk7rnawmks1armc1znfgllnsdk36fa19fg9g3245r"; depends=[BiocGenerics]; };
S4Vectors = derive { name="S4Vectors"; version="0.7.10"; sha256="15hyi728raya0x0fl0pp58kk6w4chvx7xv2f7kmp1432pkgvif9p"; depends=[BiocGenerics]; };
SAGx = derive { name="SAGx"; version="1.43.0"; sha256="111pgl7rzmscgadkbivwa736gpyw1z7zkcj648zq3jhqix569dvd"; depends=[Biobase multtest]; };
SANTA = derive { name="SANTA"; version="2.5.0"; sha256="1xrgjhja7idfby99ln90q1h6qrvsy1zbxksjccrv25qqmgaiw0ql"; depends=[igraph Matrix snow stringr]; };
SANTA = derive { name="SANTA"; version="2.5.2"; sha256="0y49ly3ll8qhbnd5yv5nfzc0bq2xcp2nwdg26338qmif4xklzs43"; depends=[igraph Matrix snow]; };
SBMLR = derive { name="SBMLR"; version="1.65.0"; sha256="1nmw5c32ka6l12cid54mc4diahjhmyg6fngsd646v70rbzgffn7q"; depends=[deSolve XML]; };
SCAN_UPC = derive { name="SCAN.UPC"; version="2.11.0"; sha256="1gwjd78qfaqv6xh4ys6rr29b82wc8qxk7ysfjcl06j6n0qk1v4s6"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; };
SELEX = derive { name="SELEX"; version="1.1.0"; sha256="13v2aqphpblwslbnm9yk9lfg31vrc3lz9ds4m8j7584iszmlgnar"; depends=[Biostrings rJava]; };
SEPA = derive { name="SEPA"; version="0.99.0"; sha256="1mc44amd39x1dvl0kamhbsn2cplg7h5j5v5y2lv1gminfl4xs0sw"; depends=[ggplot2 reshape2 segmented shiny topGO]; };
SGSeq = derive { name="SGSeq"; version="1.3.7"; sha256="0cr9z0yjbn7n3p4442vjsdr6a0g0nsw6cp0mp7g92vna8lhff4n0"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; };
SGSeq = derive { name="SGSeq"; version="1.3.12"; sha256="19i39vv0ds79hgjjkp37j49apr1jr5n93zc2dmn1llglyp9qqwyl"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; };
SIM = derive { name="SIM"; version="1.39.0"; sha256="1r08h5hkciycv4lh998vm742flim07plysgjvrq9dp4c5q4qrzr5"; depends=[globaltest quantreg quantsmooth]; };
SIMAT = derive { name="SIMAT"; version="1.1.0"; sha256="1w9pw94p4fiq54vjh132b4j0gj5qq06y0b7crdbhv9ihn6780lpg"; depends=[ggplot2 mzR Rcpp reshape2]; };
SIMAT = derive { name="SIMAT"; version="1.1.5"; sha256="074r9fyrgkay1xr0i3ps1sn7n24y26w595nssy7bryrvhhd8izbr"; depends=[ggplot2 mzR Rcpp reshape2]; };
SJava = derive { name="SJava"; version="0.95.1"; sha256="1cl0qybi71srf1ggawxdy128kz8crn8if4yi8c2m6w9ppah9m763"; depends=[]; };
SLGI = derive { name="SLGI"; version="1.29.0"; sha256="0jhi3nmgnqf8qix90kpz8gqibqvyp02ca07aka7npqls24d3i96f"; depends=[AnnotationDbi Biobase BiocGenerics lattice ScISI]; };
SLqPCR = derive { name="SLqPCR"; version="1.35.0"; sha256="1p35xgwf3i8ksznz1gi3bddj0816hdljamcb7smdrq0md5fqmpzb"; depends=[]; };
SMAP = derive { name="SMAP"; version="1.33.0"; sha256="0znl289fclws2vnqgpjnrl8b0s5q4cna3ps3il5783vr64ir88cg"; depends=[]; };
SNAGEE = derive { name="SNAGEE"; version="1.9.0"; sha256="0sn5b8ah9idbz63y1rjx8brz3h58zvh2sk59l4i48nvrm38g169r"; depends=[]; };
SNPRelate = derive { name="SNPRelate"; version="1.3.4"; sha256="1m10sa7zlsg8b77xi663jz315fi267g2d59d69a7mzcznxz7xi1z"; depends=[gdsfmt]; };
SNPRelate = derive { name="SNPRelate"; version="1.3.5"; sha256="0xr839g6a2m5p7fd2dzaz0c263b2cfdpakq5ydk0k1c3xppzly9y"; depends=[gdsfmt]; };
SNPchip = derive { name="SNPchip"; version="2.15.2"; sha256="1px5ifdsly1z8iwd22vj2xb4pk5jhsa3h2z31scw37b0v4daks50"; depends=[Biobase foreach GenomeInfoDb GenomicRanges IRanges lattice oligoClasses SummarizedExperiment]; };
SPEM = derive { name="SPEM"; version="1.9.0"; sha256="09klaxlz1ff77jhjsr95g3s4b5m285zf3fl9w4mv5pc8r1viqplf"; depends=[Biobase Rsolnp]; };
SPIA = derive { name="SPIA"; version="2.21.0"; sha256="0v8m9wfl2kqzzl3k0v7lr7g33ymdnmqi9r2fqyb42mggpq5pwxlm"; depends=[KEGGgraph]; };
@ -468,15 +473,15 @@ SRAdb = derive { name="SRAdb"; version="1.23.0"; sha256="042y06ds1jdj26jzi51wxb6
SSPA = derive { name="SSPA"; version="2.9.0"; sha256="1kkvj3s2l6zzvv6pybx38qrnm3i5dxckx2fpc4snlx7km2w175xz"; depends=[lattice limma qvalue]; };
STAN = derive { name="STAN"; version="1.3.0"; sha256="02qg79aa0j2ns1xswdirgbpwb0dlghd0lbdxgnpmy225wgb7nak6"; depends=[Rsolnp]; };
STATegRa = derive { name="STATegRa"; version="1.3.1"; sha256="0kfwi5qimg4myx5x0gjwrkhz8cxh2hz1mvxla8yn8v8fkb3ryshj"; depends=[affy Biobase calibrate edgeR foreach ggplot2 gplots gridExtra limma MASS]; };
STRINGdb = derive { name="STRINGdb"; version="1.9.0"; sha256="0nsl13gb0kjppd4gnpg35ww1dy0gnql7ki6902pxam6pz2m0sp26"; depends=[gplots hash igraph plotrix plyr png RColorBrewer RCurl sqldf]; };
STRINGdb = derive { name="STRINGdb"; version="1.9.1"; sha256="0w069dd8h1h80av18lh54xszs94d5nps19fzc225zmbdwqy21vx5"; depends=[gplots hash igraph plotrix plyr png RColorBrewer RCurl sqldf]; };
SVM2CRM = derive { name="SVM2CRM"; version="1.1.0"; sha256="0k3mg9b8i406ssvkzacz60qk000bnd1d5bmcqzc3yrh3w9qv567q"; depends=[AnnotationDbi GenomicRanges IRanges LiblineaR mclust pls ROCR rtracklayer squash verification zoo]; };
SamSPECTRAL = derive { name="SamSPECTRAL"; version="1.23.2"; sha256="1bm8b6myyafya99af6w6ayngkm8dl85ldma0lf6v0gysmn9dlqkk"; depends=[]; };
SamSPECTRAL = derive { name="SamSPECTRAL"; version="1.23.4"; sha256="0fqnqffw6q5sja3jkw6ddrachs075s5s7rnpg9fli9lgax5r4rbp"; depends=[]; };
ScISI = derive { name="ScISI"; version="1.41.0"; sha256="05snqj8qphcmnkrmv42p6zs92dmi09sd06abn5ll5234my5d0vvn"; depends=[annotate AnnotationDbi apComplex RpsiXML]; };
SemDist = derive { name="SemDist"; version="1.3.0"; sha256="0dvnp3d2s7bc4jv2vm8jikyac2cd23hx7r480g2lkcaic99wbl0s"; depends=[annotate AnnotationDbi]; };
SeqArray = derive { name="SeqArray"; version="1.9.3"; sha256="062zl6igsf12k7k9c5j0sya3mq57y0vp1giqcj3czv569ipnc93s"; depends=[Biostrings gdsfmt GenomicRanges IRanges S4Vectors VariantAnnotation]; };
SeqArray = derive { name="SeqArray"; version="1.9.7"; sha256="0gpn5dispfd8scqhgxw8pfgrwkz479ly5q8431mifmbkq8zh34pd"; depends=[Biostrings gdsfmt GenomicRanges IRanges S4Vectors VariantAnnotation]; };
SeqGSEA = derive { name="SeqGSEA"; version="1.9.0"; sha256="0znabm84qgzf9m4dk64jppn3s5vzz1sjvrdlr7s6jls8jwi8kqqi"; depends=[Biobase biomaRt DESeq doParallel]; };
SeqVarTools = derive { name="SeqVarTools"; version="1.7.0"; sha256="0nwhz7fpfrbbvcl08g8wflhz8iv660grfq2dq0l5bgqv04x3a19h"; depends=[gdsfmt GenomicRanges GWASExactHW IRanges S4Vectors SeqArray VariantAnnotation]; };
ShortRead = derive { name="ShortRead"; version="1.27.4"; sha256="1wkpl67rbiwdy5s4hr84bgc4qj4i94d3kkgg527c2xdg7pwd2vx9"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rsamtools S4Vectors XVector zlibbioc]; };
SeqVarTools = derive { name="SeqVarTools"; version="1.7.1"; sha256="04xfph2iphpmlqws5xmibq1jdkclbal2nrf18w7sblqcv67cff7x"; depends=[gdsfmt GenomicRanges GWASExactHW IRanges S4Vectors SeqArray VariantAnnotation]; };
ShortRead = derive { name="ShortRead"; version="1.27.5"; sha256="0r9gmbg9fd3n6v8c0l1mjkk9x1v6qrisamm5a1nasqbg3wmhmz5k"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rsamtools S4Vectors XVector zlibbioc]; };
SigCheck = derive { name="SigCheck"; version="2.1.0"; sha256="012n75gmsifvymbk20pjdv9g8mzmm9bzk98l089ymy5hbddja86b"; depends=[Biobase BiocParallel e1071 MLInterfaces survival]; };
SigFuge = derive { name="SigFuge"; version="1.7.0"; sha256="1b966n3rl4xs3q1vjgkxxfravqr02rdgwyzvr469y757qdqi1day"; depends=[GenomicRanges ggplot2 matlab reshape sigclust]; };
SimBindProfiles = derive { name="SimBindProfiles"; version="1.7.0"; sha256="04m7h5zil05sg9yfgjjzm1p65302fp50vxf8y1jafp1nwqialxwh"; depends=[Biobase limma mclust Ringo]; };
@ -487,7 +492,7 @@ SpeCond = derive { name="SpeCond"; version="1.23.0"; sha256="0nbbqazxql9mc5idvrc
SplicingGraphs = derive { name="SplicingGraphs"; version="1.9.1"; sha256="1s3kvaxrrvfndp4imavj0r9zw0rg37cn9xwxhi5zpfd7a784z1xk"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; };
Starr = derive { name="Starr"; version="1.25.0"; sha256="0553rfkhzzlszhmfcrl7r7n2jmvvz9rqj91x131x3jsmb1qavw57"; depends=[affxparser affy MASS pspline Ringo zlibbioc]; };
Streamer = derive { name="Streamer"; version="1.15.2"; sha256="0mah1sq797ihy82mvb6vyppggap3nxcpwbnswxf1rw0jxhnjnmll"; depends=[BiocGenerics graph RBGL]; };
SummarizedExperiment = derive { name="SummarizedExperiment"; version="0.1.5"; sha256="1n29sssjkhaj2rs9qd9g8mq25a63rs04f1kn9hjy67f10i5h1l1n"; depends=[Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
SummarizedExperiment = derive { name="SummarizedExperiment"; version="0.3.2"; sha256="0k7dmly8g1qhpqx4qv376ixkwvx073ydc5xqi29s81mwp5fq08zi"; depends=[Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
Sushi = derive { name="Sushi"; version="1.6.1"; sha256="0g1fk0xrn584l49r73crj0bc5z2y6rdzyf54d221r7k119njp3dw"; depends=[biomaRt zoo]; };
SwimR = derive { name="SwimR"; version="1.7.0"; sha256="07kh24m9d1q3swj3srjybj6lq68s89750fbvlg449px4aq23yrq0"; depends=[gplots heatmap_plus R2HTML signal]; };
TCC = derive { name="TCC"; version="1.9.0"; sha256="1bihqfvrq3sjs38m2a60swxqcxmgabb1lmsnfrb669imiqc7ramj"; depends=[baySeq DESeq DESeq2 edgeR ROC samr]; };
@ -507,13 +512,14 @@ TransView = derive { name="TransView"; version="1.13.0"; sha256="14fanxl8lqam349
TurboNorm = derive { name="TurboNorm"; version="1.17.0"; sha256="1f2frh2xnngzpl2q2jxiild98qgnd60c0pz31aisk013nj3jdadq"; depends=[affy convert lattice limma marray]; };
TypeInfo = derive { name="TypeInfo"; version="1.35.0"; sha256="0rxwfaqg8sg70hiq8frm4pjhs8a17n0rgjra346bsi8cm4a2vyhz"; depends=[]; };
UNDO = derive { name="UNDO"; version="1.11.0"; sha256="173cdpp0gipwplxdf7ynxqnv8fqfkbyx7xmr5cx396zi8gpq3am4"; depends=[Biobase BiocGenerics boot MASS nnls]; };
UniProt_ws = derive { name="UniProt.ws"; version="2.9.1"; sha256="0w5rgr5a5mmhrgvgdyxvglflz1z3yl8i8kfrhcavl1apkqv2v0p0"; depends=[AnnotationDbi BiocGenerics RCurl RSQLite]; };
VanillaICE = derive { name="VanillaICE"; version="1.31.2"; sha256="0szd11zz5nvax9awwh1v3qdg01x7s87a2smacz96fya9acjiclhb"; depends=[Biobase BiocGenerics crlmm data_table foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment]; };
VariantAnnotation = derive { name="VariantAnnotation"; version="1.15.13"; sha256="1fp09wnvwh981bwysfnvak1qz0ybidz6qim73w1wg32dn2d42p5a"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; };
VariantFiltering = derive { name="VariantFiltering"; version="1.5.14"; sha256="0r972lvyjcq0wxxnpgd9ym0b7kfjl8nyjkkci2z5gnilpq9ds5fw"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges graph Gviz IRanges RBGL Rsamtools RSQLite S4Vectors shiny VariantAnnotation XVector]; };
UniProt_ws = derive { name="UniProt.ws"; version="2.9.2"; sha256="0pby1c7y8fxkpdd2knbv8gbxs78ry1dz8q9zqw6bakp831v5kbgw"; depends=[AnnotationDbi BiocGenerics RCurl RSQLite]; };
VanillaICE = derive { name="VanillaICE"; version="1.31.3"; sha256="0niimjngjx8wq2fylzjdijb2za4w4ia53aqkdnjwjfl78rg2hwch"; depends=[Biobase BiocGenerics crlmm data_table foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment]; };
VariantAnnotation = derive { name="VariantAnnotation"; version="1.15.19"; sha256="1hqpjwrnyl5hp8vwl68v2cnf868vjf7k0vckjczdcc66wp3g9r70"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; };
VariantFiltering = derive { name="VariantFiltering"; version="1.5.15"; sha256="1dawzsv358h3p5x7kcml17snpbypgwjl5b0aam2wrsb7qp80sqh7"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges graph Gviz IRanges RBGL Rsamtools RSQLite S4Vectors shiny VariantAnnotation XVector]; };
VariantTools = derive { name="VariantTools"; version="1.11.0"; sha256="1yyx9l6q3v4igm2ppnrsj9c7p4p0zpkqwjyf9d7b7rqvrk9yjyrv"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges gmapR IRanges Matrix Rsamtools rtracklayer S4Vectors VariantAnnotation]; };
Vega = derive { name="Vega"; version="1.17.0"; sha256="1c39112czlw9hgh9gmkwxhhz9kwki48k8lsfmy3hkzxqpxx61h01"; depends=[]; };
VegaMC = derive { name="VegaMC"; version="3.7.0"; sha256="046wly5sn4vwk3h4bcick8q5dpjrfjq393rqjl8y4v24iqynlyqd"; depends=[Biobase biomaRt genoset]; };
XBSeq = derive { name="XBSeq"; version="0.99.6"; sha256="1j8hwy2wi4vmc1nnc5xij578w445vqj0v6ngz06rlbdi5kb9k7ls"; depends=[Biobase BiocGenerics DESeq2 ggplot2 locfit matrixStats pracma]; };
XDE = derive { name="XDE"; version="2.15.0"; sha256="17i8zxb6q4wpsa8lymcnilmr39ip1a54h6rqyl3m7qa8xwb0gv50"; depends=[Biobase BiocGenerics genefilter gtools MergeMaid mvtnorm]; };
XVector = derive { name="XVector"; version="0.9.1"; sha256="0l5l45i7sx1j51s3wkab207qwbk77i8iazd26isf0yp3rsb84a4c"; depends=[BiocGenerics IRanges S4Vectors]; };
a4 = derive { name="a4"; version="1.17.0"; sha256="0pn0gm4xkngz72i92h58d0xbpcx04938x4vm0mqsilrjapchripj"; depends=[a4Base a4Classif a4Core a4Preproc a4Reporting]; };
@ -525,7 +531,7 @@ a4Reporting = derive { name="a4Reporting"; version="1.17.0"; sha256="1fpdkw048gv
aCGH = derive { name="aCGH"; version="1.47.0"; sha256="095arlryay4gdr6kva7vf9lcby60pyx5bs4vcx586zgwskzpb2ln"; depends=[Biobase cluster multtest survival]; };
acde = derive { name="acde"; version="0.99.5"; sha256="1bbsfr7a2sivb6dpn06hwj0i95wdlfxzba4a36pakx7nzn6nv76p"; depends=[boot]; };
adSplit = derive { name="adSplit"; version="1.39.0"; sha256="1jprbqwhksyp9jf05r5dbfzgn30xm16shqsf8yi9b3nr7z2swvwm"; depends=[AnnotationDbi Biobase cluster multtest]; };
affxparser = derive { name="affxparser"; version="1.41.4"; sha256="11l1d74qvsaknnfa4wwp1jb0v17hwbz5yc8fnvg5qqmdwnblrdjc"; depends=[]; };
affxparser = derive { name="affxparser"; version="1.41.5"; sha256="0naiv8z07zr1xjnmimx17awnsb9dryiz4w9jx17whrjwdpddx1p5"; depends=[]; };
affy = derive { name="affy"; version="1.47.1"; sha256="1c9ggyqhj65mj0nq9xsqfmzp4a5705qj67swjpk5bmqajxr390a3"; depends=[affyio Biobase BiocGenerics BiocInstaller preprocessCore zlibbioc]; };
affyContam = derive { name="affyContam"; version="1.27.0"; sha256="1hd9kchhdjcnkxlf6kcc59jb5a9v67671shvzprraa1lg4800j5x"; depends=[affy Biobase]; };
affyILM = derive { name="affyILM"; version="1.21.0"; sha256="1gvagg83p4vxp6q72s7camcg5lhxdfy7rmm3a2p2n29267xvcz5x"; depends=[affxparser affy Biobase gcrma]; };
@ -546,26 +552,26 @@ annmap = derive { name="annmap"; version="1.11.0"; sha256="0s0ifbwra3zczw9h0nqcs
annotate = derive { name="annotate"; version="1.47.0"; sha256="06nrzkl9g26rrnqvakwkn2yinvgka02a5iivhi9kgjk4g5plcmkw"; depends=[AnnotationDbi Biobase BiocGenerics DBI XML xtable]; };
annotationTools = derive { name="annotationTools"; version="1.43.0"; sha256="1dqs8f4p1ks03q0lfwm3hs116ahks39hk17knkqs492zcqr83qay"; depends=[Biobase]; };
anota = derive { name="anota"; version="1.17.0"; sha256="0grdmpdg03wqjs6rk558nvl8vvdi6my0jv06f3h364pk44hrijdn"; depends=[multtest qvalue]; };
antiProfiles = derive { name="antiProfiles"; version="1.9.0"; sha256="0jyrwk7h3qrka950yqhblavf40yjbyarimrf8d7zbq1kd3licfbf"; depends=[matrixStats]; };
antiProfiles = derive { name="antiProfiles"; version="1.9.1"; sha256="07gzl7wsvv3x7in7n1fwq4cm8bqhlrxwq6ra1k2556z9z8ad7y33"; depends=[locfit matrixStats]; };
apComplex = derive { name="apComplex"; version="2.35.0"; sha256="0h9vvz62fbnqqw2qz4kpcr0s40yj7swy0plkdaq51q04p41z016r"; depends=[graph RBGL Rgraphviz]; };
aroma_light = derive { name="aroma.light"; version="2.5.1"; sha256="0d48c2860gg2qpmqx5i0lzh2n8chb4jdq78f169vlynx49ix3kq7"; depends=[matrixStats R_methodsS3 R_oo R_utils]; };
aroma_light = derive { name="aroma.light"; version="2.5.2"; sha256="1dw3b06fq0da6ji13x42iqwwidx2ajg8q75svsd5y98dly8jniib"; depends=[matrixStats R_methodsS3 R_oo R_utils]; };
arrayMvout = derive { name="arrayMvout"; version="1.27.0"; sha256="1czqsd34d8rb9h4vwp2m6ficvi41gbdgrilgbl0fb01vlp79qq0k"; depends=[affy affyContam Biobase lumi mdqc parody simpleaffy]; };
arrayQuality = derive { name="arrayQuality"; version="1.47.0"; sha256="0f3wvvb1a78hzlxansjfh065vbyh2qk9vz3jna6294zc7k4r7wfb"; depends=[gridBase hexbin limma marray RColorBrewer]; };
arrayQualityMetrics = derive { name="arrayQualityMetrics"; version="3.25.0"; sha256="0h90j2fj87bvwj1cjy7qq5mnfy4jabqa8ijq23gp3p51qwyh84zr"; depends=[affy affyPLM beadarray Biobase Cairo genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG vsn XML]; };
attract = derive { name="attract"; version="1.21.0"; sha256="0kl2kgxvm9ix2lwcwilmzcjhxbhx99afn6g6608aq26649q3k2sz"; depends=[AnnotationDbi Biobase cluster GOstats limma]; };
ballgown = derive { name="ballgown"; version="2.1.0"; sha256="168bpcawi5g6vhwg16585qd6g1pp3kd4baldcd1yk9bkccxaj8xx"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; };
ballgown = derive { name="ballgown"; version="2.1.1"; sha256="0nb9xhcvdl9zpfix3rsr0dlm7f7smiabbzfiw50psw9mg8wki0dn"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; };
bamsignals = derive { name="bamsignals"; version="1.1.0"; sha256="1ga4swlqmjg4xnmkk16h0qjh3dpz7n0pra2233j4cz78cn8zvj3p"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; };
baySeq = derive { name="baySeq"; version="2.3.0"; sha256="1l0is5dcwip7babll7mpsahhj69v1j1d7caq64ak6qhb477pmak5"; depends=[abind GenomicRanges perm]; };
beadarray = derive { name="beadarray"; version="2.19.0"; sha256="0izc7i65j60k20a86hblkfq6vq2n855vi8qrn42p3gx27s28a20v"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 illuminaio IRanges limma reshape2]; };
beadarray = derive { name="beadarray"; version="2.19.1"; sha256="0al50lli8ckbr8cs38r6xr5v4rldf6xy7iwl5hbs5avxnibk3s8k"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 illuminaio IRanges limma reshape2]; };
beadarraySNP = derive { name="beadarraySNP"; version="1.35.0"; sha256="0g6ba4iynfgrm647d5vx6wk9pijg62bdvvz1afz9dimqvjlwybhc"; depends=[Biobase quantsmooth]; };
betr = derive { name="betr"; version="1.25.0"; sha256="0jd7r069jlfp5fj51xw8k6jpxq5kb364xi9331l06hwijp3msrk6"; depends=[Biobase limma mvtnorm]; };
bgafun = derive { name="bgafun"; version="1.31.0"; sha256="18wk42h1i06j3swlsac9vnkc7riimk7qap59lygji1p3zvy1nkpx"; depends=[ade4 made4 seqinr]; };
bgx = derive { name="bgx"; version="1.35.0"; sha256="1cawfanrxq82b24ny050hv4p607k2zhfxllgl8j1j9qm9n4yk4yk"; depends=[affy Biobase gcrma]; };
bigmemoryExtras = derive { name="bigmemoryExtras"; version="1.13.2"; sha256="0qmrpm4bir0si5xd5v8ih6wnwfprwp4q9hcxbylf1721v9m9wpwv"; depends=[bigmemory Biobase]; };
bioDist = derive { name="bioDist"; version="1.41.0"; sha256="14a18ky9x36fa8yx3kry23c0vfazxy0lg0j2zkdnr1irngc9wnw5"; depends=[Biobase KernSmooth]; };
bioassayR = derive { name="bioassayR"; version="1.7.3"; sha256="1m6b2l0y7acpwpb6jjmmhsxdjrrhqnas7c8a2xq50x88l9ks4v68"; depends=[BiocGenerics DBI Matrix rjson RSQLite XML]; };
bioassayR = derive { name="bioassayR"; version="1.7.7"; sha256="1pflygamq0l0pdps4ay3rl4f8c1njrb55lnl0p2z7mgpj6dbgvf8"; depends=[BiocGenerics DBI Matrix rjson RSQLite XML]; };
biocGraph = derive { name="biocGraph"; version="1.31.0"; sha256="069n4867pkygrsgfjp6arnnmcvlij03r1a2kbs9jgnpx4knck09i"; depends=[BiocGenerics geneplotter graph Rgraphviz]; };
biocViews = derive { name="biocViews"; version="1.37.7"; sha256="0d7gwbb9x23gr2h0pl72hzsm2jfj7s3dzbl66gmk6dc0bs7ibw42"; depends=[Biobase graph knitr RBGL RCurl RUnit XML]; };
biocViews = derive { name="biocViews"; version="1.37.10"; sha256="1wa9avvgmfvl44l7gfsg7ivbsylixh413ckc5p8xryax6scb2kzy"; depends=[Biobase graph knitr RBGL RCurl RUnit XML]; };
biomaRt = derive { name="biomaRt"; version="2.25.1"; sha256="1dk55qrfxyzgnjk90qy6mfgw04fpwfy4jkhwbmnpnky826mg7bwb"; depends=[AnnotationDbi RCurl XML]; };
biomvRCNS = derive { name="biomvRCNS"; version="1.9.1"; sha256="0ni7ncip0vx1ipyrgd2kkasw6cmxbr2ha2dsqb0bizyyf2981rnh"; depends=[GenomicRanges Gviz IRanges mvtnorm]; };
biosvd = derive { name="biosvd"; version="2.5.0"; sha256="0xnc3vpbj5p14w2fwql8vpz9lyvivq3kjmwsr62abn418ampa941"; depends=[Biobase BiocGenerics NMF]; };
@ -574,7 +580,7 @@ birta = derive { name="birta"; version="1.13.0"; sha256="01lrwg4naks85gcrlg3sk3p
birte = derive { name="birte"; version="1.3.0"; sha256="0azkl9x2hk826sdpw96ls868jf83yf1v79inyjg7xsilal2slqgf"; depends=[Biobase limma MASS nem Rcpp RcppArmadillo ridge]; };
blima = derive { name="blima"; version="1.3.0"; sha256="1i7njg1lw76717irmfbpy9pmv8hy7nzyini2wm6625cafizp5xq8"; depends=[beadarray Biobase BiocGenerics]; };
bridge = derive { name="bridge"; version="1.33.0"; sha256="06iz67amv80az14s8yim25jfsgbxhxbfifbqazsc78ip9gd7lfyv"; depends=[rama]; };
bsseq = derive { name="bsseq"; version="1.5.3"; sha256="1rdblq7xh5hbghr66iamnpc24yiqrnqfn7pr835m6wag6waxdc3i"; depends=[Biobase BiocGenerics data_table GenomeInfoDb GenomicRanges gtools IRanges locfit matrixStats S4Vectors scales SummarizedExperiment]; };
bsseq = derive { name="bsseq"; version="1.5.4"; sha256="1hr9h4h099506id4xvh6xm9x40dv5hsiyz8rzj4dxxkq7095h9d1"; depends=[Biobase BiocGenerics data_table GenomeInfoDb GenomicRanges gtools IRanges locfit matrixStats S4Vectors scales SummarizedExperiment]; };
bumphunter = derive { name="bumphunter"; version="1.9.1"; sha256="0phq9dhrj8fa253a64vwfp75j85vp9142g5gmfy1g1n861xy8r26"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; };
caOmicsV = derive { name="caOmicsV"; version="0.99.2"; sha256="0y96f64m0liv53vbby866v1ga5nml1506pp6ff4ax7dbg0niiwwn"; depends=[bc3net igraph]; };
canceR = derive { name="canceR"; version="1.1.2"; sha256="07wikalgmf3vw2dzmri1ia80hfman53mynsk40y549qn8hjija1k"; depends=[Biobase cgdsr circlize Formula geNetClassifier GSEABase GSEAlm phenoTest plyr rpart RUnit survival tcltk2 tkrplot]; };
@ -599,19 +605,19 @@ cleaver = derive { name="cleaver"; version="1.7.0"; sha256="14vbdagy61imql6z2qaz
clippda = derive { name="clippda"; version="1.19.0"; sha256="1gd5b2n2qa9bv1n93vcdz8lg8kmn1lv923i3gzq8pcy7fbz7m5cs"; depends=[Biobase lattice limma rgl scatterplot3d statmod]; };
clipper = derive { name="clipper"; version="1.9.0"; sha256="0py5hdbf8wypw5r9r2d7b3239b83lyrybcvksrmiklv7snw9c2qx"; depends=[Biobase corpcor graph gRbase igraph KEGGgraph Matrix qpgraph RBGL Rcpp]; };
clonotypeR = derive { name="clonotypeR"; version="1.7.0"; sha256="1pwwjgln7r7035fdqqfb69fgql91cxfablbwid2m5xkdrwzpb57s"; depends=[]; };
clst = derive { name="clst"; version="1.17.0"; sha256="0wsn5ins5hz2xq866wh71b7jk4six5cy3hq5ff2a04n20asaiq4i"; depends=[lattice ROC]; };
clstutils = derive { name="clstutils"; version="1.17.0"; sha256="0bnqmmi5j0iy1zjxlj4b621d9llww4b2wvrq1vcqjm5wfrn7a372"; depends=[ape clst lattice rjson RSQLite]; };
clusterProfiler = derive { name="clusterProfiler"; version="2.3.3"; sha256="1hsqfl6dp5671y3sr0qxr01fra1b6y44a7jnc94mqdfabsm9a9vx"; depends=[AnnotationDbi DOSE ggplot2 GOSemSim KEGGREST magrittr plyr qvalue topGO]; };
clst = derive { name="clst"; version="1.17.1"; sha256="08gqxcjchzywvc67nfjmr2i1xxm71i1j00qxdq3zs6p9y4n65qa0"; depends=[lattice ROC]; };
clstutils = derive { name="clstutils"; version="1.17.1"; sha256="04gwj8mlbqd5l2nas146vk0vzad0z1y4225g935h9baspcmdh3f8"; depends=[ape clst lattice rjson RSQLite]; };
clusterProfiler = derive { name="clusterProfiler"; version="2.3.6"; sha256="1hfknmad6wix5ciwcfjn80s0y78966gfkifhxa6wxpkddmdhklqw"; depends=[AnnotationDbi DOSE ggplot2 GOSemSim KEGGREST magrittr plyr qvalue topGO]; };
clusterStab = derive { name="clusterStab"; version="1.41.0"; sha256="0sgj2k70fc3r3s19vxcx95z8s3a42yshl78swxp0qp55kidbhvdp"; depends=[Biobase]; };
cn_farms = derive { name="cn.farms"; version="1.17.0"; sha256="09xasmanimx3mzis786iwy2nvxqa5rzvrvrz1hpsiyh5y77yrbnb"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; };
cn_mops = derive { name="cn.mops"; version="1.15.0"; sha256="11yds13b65hnhaiqckphcl7hn9z85qv7jpwrp4knscl9y8bs3s78"; depends=[Biobase BiocGenerics GenomicRanges IRanges Rsamtools]; };
cn_mops = derive { name="cn.mops"; version="1.15.1"; sha256="03gr4i1vpyg6h3yyqrdjq1z1dzq9jzdazcrv9045v652qf4jbshr"; depends=[Biobase BiocGenerics GenomicRanges IRanges Rsamtools]; };
cnvGSA = derive { name="cnvGSA"; version="1.13.0"; sha256="1sswh1xwimki8ys08l2h95ajpnm5gr0bscvwilhjw4g2a0y7nibr"; depends=[brglm doParallel foreach GenomicRanges splitstackshape]; };
coGPS = derive { name="coGPS"; version="1.13.0"; sha256="160cf9ijn5crvhwbqldix1n36jrmn51085sr4whgm765si57wwb4"; depends=[]; };
coMET = derive { name="coMET"; version="1.1.0"; sha256="01baf156p0ldqhczrin2lsf4jir7158b0db5732jddnl5ayghsi3"; depends=[biomaRt colortools GenomicRanges ggbio ggplot2 gridExtra Gviz hash IRanges psych rtracklayer S4Vectors trackViewer]; };
coRNAi = derive { name="coRNAi"; version="1.19.0"; sha256="1vidwyq8rnkbi0pfbh3mk8m3qj8acwqn7q6jm35gahy4y3p0nq7x"; depends=[cellHTS2 gplots lattice limma locfit MASS]; };
cobindR = derive { name="cobindR"; version="1.7.1"; sha256="0mya51pynfdxfap3paylinqg10fpir7flsz1bng0sk34y15jnxbz"; depends=[BiocGenerics biomaRt Biostrings BSgenome gmp gplots IRanges mclust rtfbs seqinr yaml]; };
codelink = derive { name="codelink"; version="1.37.0"; sha256="10s8x9j034j9vl7hv9w8ws4kihmw632b177ckiq0gsy2k63iampk"; depends=[annotate Biobase BiocGenerics limma]; };
cogena = derive { name="cogena"; version="1.1.2"; sha256="0qjcjh65hbllmqzjnmr4vwgn7scs6lfb7g4pxka4w3r2ca444a0v"; depends=[amap Biobase biwt class cluster corrplot devtools doParallel fastcluster foreach ggplot2 gplots kohonen mclust reshape2]; };
codelink = derive { name="codelink"; version="1.37.4"; sha256="0rn2cbjgb7f9yypdrvk5ahgpghd3pn45pb183rs9fdywivys9a0v"; depends=[annotate Biobase BiocGenerics limma]; };
cogena = derive { name="cogena"; version="1.1.3"; sha256="074knrfvnhf4fp98dypwzjsp9z15lj7xlgm1wfmnijcwrwf5566p"; depends=[amap Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots igraph kohonen mclust reshape2 STRINGdb]; };
compEpiTools = derive { name="compEpiTools"; version="1.3.4"; sha256="0y12sn2dh0x2y7nghkh6dm98b4ilg41694shw3m0fcgaz22c30kp"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges gplots IRanges methylPipe Rsamtools S4Vectors topGO XVector]; };
compcodeR = derive { name="compcodeR"; version="1.5.3"; sha256="0208sxff40mjizr47zf6yf87irnnjm0gizdk9h5frbizdxl2i9nn"; depends=[caTools edgeR gdata ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS modeest ROCR sm stringr vioplot]; };
conumee = derive { name="conumee"; version="1.1.0"; sha256="1sxl5m7yfqbzg76n06y1jcv0v75y7wf3ad66zw8v004nz84diaix"; depends=[DNAcopy GenomeInfoDb GenomicRanges IRanges minfi rtracklayer]; };
@ -622,7 +628,7 @@ cosmiq = derive { name="cosmiq"; version="1.3.0"; sha256="1868sxwlmaqas3w3nrw4bv
cpvSNP = derive { name="cpvSNP"; version="1.1.0"; sha256="066y409zfz0bway990ygck5lf0vzl6whh212v4rpis1l9bzfv434"; depends=[BiocParallel corpcor GenomicFeatures ggplot2 GSEABase plyr]; };
cqn = derive { name="cqn"; version="1.15.1"; sha256="1g1ip7lxs82qq0qbhnx90hxmjiypc76p1sgx7yvj5nmp6wp1m5xy"; depends=[mclust nor1mix preprocessCore quantreg]; };
crlmm = derive { name="crlmm"; version="1.27.0"; sha256="16i3ijqhwp6c2dshk8r7idrjwga3sm1qcafqz9gl4q6b04s5jvym"; depends=[affyio Biobase BiocGenerics ellipse ff foreach illuminaio lattice matrixStats mvtnorm oligoClasses preprocessCore RcppEigen SNPchip VGAM]; };
csaw = derive { name="csaw"; version="1.3.7"; sha256="0bislfi25l4m5rviccp8nx5ilw9804h4dfxc928a8mxhc8piqgzx"; depends=[AnnotationDbi edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges limma Rsamtools S4Vectors SummarizedExperiment]; };
csaw = derive { name="csaw"; version="1.3.9"; sha256="10ad0nflzy5ygq7rcn5swpdhxd4rr4y65759pvhji17scsinhswp"; depends=[AnnotationDbi edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges limma Rsamtools S4Vectors SummarizedExperiment]; };
ctc = derive { name="ctc"; version="1.43.0"; sha256="139rxdvyvv3wvlc5q3581y5hkjkd5smxvb606mlxjb8lww4qmcj8"; depends=[amap]; };
cummeRbund = derive { name="cummeRbund"; version="2.11.1"; sha256="0nd1a9wi2qvvdhfvkb18ql82bfzhz6fivc7wdfv90mibrd7ypb2a"; depends=[Biobase BiocGenerics fastcluster ggplot2 Gviz plyr reshape2 RSQLite rtracklayer]; };
customProDB = derive { name="customProDB"; version="1.9.4"; sha256="0ws620i6s9p477zfns0m6qpzzhrsivjziv2gv3gmy19dhfh0ln08"; depends=[AnnotationDbi biomaRt Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr RCurl Rsamtools RSQLite rtracklayer stringr VariantAnnotation]; };
@ -630,35 +636,37 @@ cycle = derive { name="cycle"; version="1.23.0"; sha256="1fpn41xgnvn77m2bga3j70h
cytofkit = derive { name="cytofkit"; version="1.1.1"; sha256="0kzy6ylijyypsii5vl77r0wl2s2rhnvj98qbiy96ziijfjmjmfcc"; depends=[Biobase e1071 flowCore ggplot2 gplots reshape Rtsne vegan]; };
daMA = derive { name="daMA"; version="1.41.0"; sha256="0jfp6kxzys0w8vv8fr5shki79rimiagylvkz5avg2idvzgs2q1w8"; depends=[MASS]; };
dagLogo = derive { name="dagLogo"; version="1.7.1"; sha256="1mqxhdwiaq9szg5krhxndr1wgl77cgxxxq271a5n53srkbfh77s4"; depends=[biomaRt Biostrings grImport motifStack pheatmap]; };
ddCt = derive { name="ddCt"; version="1.24.1"; sha256="0am65cwrhy0xijxfg1709rwvdjammdfz4y2g7cyd83d7chfaznxa"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; };
ddCt = derive { name="ddCt"; version="1.24.2"; sha256="06cg2q8sg2685z7salbfyq2xb1mya3avgjrdmi6nw88rr8pxz0w7"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; };
ddgraph = derive { name="ddgraph"; version="1.13.0"; sha256="1krdxmcjrhbw5gdrg68m41m1mhb5q0ijmqhxbvvxzqm3wyh8v2g1"; depends=[bnlearn graph gtools MASS pcalg plotrix RColorBrewer Rcpp]; };
deepSNV = derive { name="deepSNV"; version="1.15.3"; sha256="1sg4swpna7h4lmpzmqg1x4lqmyx1xq0fckz43gpvpk5s8li6j62h"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; };
deltaGseg = derive { name="deltaGseg"; version="1.9.0"; sha256="0y8fw4gxmhsr5xrbg1k0s8207mhj6dmlbbmny2dn66c1qlg2bh24"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; };
derfinder = derive { name="derfinder"; version="1.3.2"; sha256="11syvmgfw7sdl9p5sl0b0q9kkk37xdqil8qz70l0p9m9j1z385sq"; depends=[AnnotationDbi BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; };
derfinderHelper = derive { name="derfinderHelper"; version="1.3.0"; sha256="0hgj1adh82w2b1gdw6zh8hxij4n5a0bsild66cpb0i8cny8a3ayj"; depends=[IRanges Matrix S4Vectors]; };
derfinderPlot = derive { name="derfinderPlot"; version="1.3.2"; sha256="1fhgq1nr4qxv6l1qf1g92gw6c9h47i92ybxcr9m88kqp53y6flj4"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer reshape2 scales]; };
derfinder = derive { name="derfinder"; version="1.3.3"; sha256="11npavkr27f3c48bp40vgn9klgmpqs2w17gl96qn5g1y2gyvrhk5"; depends=[AnnotationDbi BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; };
derfinderHelper = derive { name="derfinderHelper"; version="1.3.1"; sha256="03kijh42x1v4ix4gxs1729rifwckaz9npcrd9b3j6xsizx97b4cr"; depends=[IRanges Matrix S4Vectors]; };
derfinderPlot = derive { name="derfinderPlot"; version="1.3.4"; sha256="1f7x609sknmbn8gsxq75073vfr0qd0k9j7gfi0fxvgnm5f4lkizx"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer reshape2 scales]; };
dexus = derive { name="dexus"; version="1.9.0"; sha256="1xnjs6gmzkdj1snwakq73bz8ypnxzzxh8ki9wv0ljfbfwv1j7z53"; depends=[BiocGenerics]; };
diffGeneAnalysis = derive { name="diffGeneAnalysis"; version="1.51.0"; sha256="1k5as63cd87nnigc0yzaxvhskpnbr7l1ym2bqc57zsm3bwh8xxwb"; depends=[minpack_lm]; };
diffHic = derive { name="diffHic"; version="1.1.7"; sha256="1h6qlvk7bbdfi0lg86kbd4milp3imgkq79w73gf1am4knpplks1g"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges IRanges limma locfit rhdf5 Rsamtools S4Vectors]; };
diffHic = derive { name="diffHic"; version="1.1.9"; sha256="0azagkb87v2lxmb5bvjqc9bz8pqnn1a9j3p5r4v8izpqwq23hf75"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges IRanges limma locfit rhdf5 Rsamtools S4Vectors]; };
diggit = derive { name="diggit"; version="1.1.1"; sha256="0c3zy1d9bzb6asa4clgq738h7dj6md55gclwa244qyx857b58rqv"; depends=[Biobase ks viper]; };
dks = derive { name="dks"; version="1.15.0"; sha256="1d66jfca6q8ni5vz5zh7fmxwh3y0yvl2p7gal7w55py6wvyssnl3"; depends=[cubature]; };
domainsignatures = derive { name="domainsignatures"; version="1.29.0"; sha256="1wkypbm5ldwx8y2n16fajf450pwv6zipjdk0176a5rqihaflz80l"; depends=[AnnotationDbi biomaRt prada]; };
dualKS = derive { name="dualKS"; version="1.29.0"; sha256="1a2wb137x98nmdm8dvnl4msl89mlyvm8f1kqzr6jhdj4wjv2hrg1"; depends=[affy Biobase]; };
dyebias = derive { name="dyebias"; version="1.27.0"; sha256="095qcnri2g19m363ipdi31xgn20b51mbfv5mgkk21m6fww1npc92"; depends=[Biobase marray]; };
easyRNASeq = derive { name="easyRNASeq"; version="2.5.2"; sha256="142chhn3p8c22vm9mky2mx32s6d09by99fmrck87nglg0w8l2n9j"; depends=[Biobase BiocGenerics biomaRt Biostrings DESeq edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD Rsamtools S4Vectors ShortRead SummarizedExperiment]; };
easyRNASeq = derive { name="easyRNASeq"; version="2.5.5"; sha256="0g2n3ayl06bn8khf5pail119i1611nq71vvqfkdh0v30nj9rsbw2"; depends=[Biobase BiocGenerics BiocParallel biomaRt Biostrings DESeq edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD Rsamtools S4Vectors ShortRead SummarizedExperiment]; };
ecolitk = derive { name="ecolitk"; version="1.41.0"; sha256="0jga35q98bidqjlqynq0cack4gwsm3hw34vgns67v37krjs4hn9f"; depends=[Biobase]; };
edge = derive { name="edge"; version="2.1.0"; sha256="1xxz8qyagrfr92ldaxlgb8dfpm6nx3lyk6fa4dl0m8yvlr6lw2fa"; depends=[Biobase MASS qvalue snm sva]; };
edgeR = derive { name="edgeR"; version="3.11.2"; sha256="0df181xjga322phjinlffl0j2mg61pq4p8h3sxx3xz100c6xrahr"; depends=[limma]; };
eiR = derive { name="eiR"; version="1.9.1"; sha256="01wkz9lc6gi1a98q02c6zyzfsnkk52px60xg3lawp2419dvj2ww3"; depends=[BH BiocGenerics ChemmineR DBI digest RCurl RUnit snow snowfall]; };
eisa = derive { name="eisa"; version="1.21.0"; sha256="03366q5qj4wdfm4d9lwysmgz3bgwc53zynw2cmsj7w3yg6dj63km"; depends=[AnnotationDbi Biobase BiocGenerics Category DBI genefilter isa2]; };
ensemblVEP = derive { name="ensemblVEP"; version="1.9.2"; sha256="10xjxafm97jnk7dfi0j1ahyd6hp45r5rpfr206fbiipcq3ha2p9h"; depends=[BiocGenerics Biostrings GenomicRanges VariantAnnotation]; };
ensembldb = derive { name="ensembldb"; version="1.1.3"; sha256="1vp4bb3i5jw8kmxz1784wxwh2i9m344xhssfv5w4i2k9lx2anqrs"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics DBI GenomeInfoDb GenomicFeatures GenomicRanges Rsamtools RSQLite rtracklayer S4Vectors]; };
epigenomix = derive { name="epigenomix"; version="1.9.1"; sha256="0jr0ly6sd818yhcpqk685y7fb4q8dd80w18qpwpypgf4ysymv36y"; depends=[beadarray Biobase BiocGenerics GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; };
epivizr = derive { name="epivizr"; version="1.7.7"; sha256="00hjvpg6vr0kd1nhyr3dfjqyxy8jfgfkv0lainj48w7lr9ld7y9w"; depends=[Biobase GenomeInfoDb GenomicFeatures GenomicRanges httpuv mime OrganismDbi R6 rjson rtracklayer S4Vectors SummarizedExperiment]; };
erccdashboard = derive { name="erccdashboard"; version="1.3.0"; sha256="06jvrlp0sfnkrcmyach1q0ry4pzyv2frzg4c0swr193vxv4mx14w"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr QuasiSeq qvalue reshape2 ROCR scales stringr]; };
ensembldb = derive { name="ensembldb"; version="1.1.5"; sha256="1q32pcg07lgzzavcgx5843ljchklgbscw0qgifrs6d1hidbldjvq"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics DBI GenomeInfoDb GenomicFeatures GenomicRanges Rsamtools RSQLite rtracklayer S4Vectors]; };
epigenomix = derive { name="epigenomix"; version="1.9.2"; sha256="0l7pa2nyllf7imapbxqavyg3h0ba3wc1bhrhz7a7bc8rr8qyq0w1"; depends=[beadarray Biobase BiocGenerics GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; };
epivizr = derive { name="epivizr"; version="1.7.8"; sha256="01z80dbahjbf60d71hiqai5h5i546hvl2j737b4xjca9017g2wsg"; depends=[Biobase GenomeInfoDb GenomicFeatures GenomicRanges httpuv mime OrganismDbi R6 rjson rtracklayer S4Vectors SummarizedExperiment]; };
erccdashboard = derive { name="erccdashboard"; version="1.3.1"; sha256="10ya8gzd9z3b7kwm9yf7v1cbxpqi1r7ghxwy1sg6b646gf3g580v"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr QuasiSeq qvalue reshape2 ROCR scales stringr]; };
erma = derive { name="erma"; version="0.1.2"; sha256="046m88bjfkv8xkmz8il6l0zbp0wcr7n6wvsv2lavcyl09qnjghs0"; depends=[BiocGenerics GenomicFiles GenomicRanges ggplot2 rtracklayer S4Vectors]; };
exomeCopy = derive { name="exomeCopy"; version="1.15.0"; sha256="1047k3whc8pjcrvb10dmykbc3c7ah4fgzsiqxw7asp4ksiqpj5ii"; depends=[GenomeInfoDb GenomicRanges IRanges Rsamtools]; };
exomePeak = derive { name="exomePeak"; version="1.9.0"; sha256="05bdwp8msi9i0hi505pwm4lxa8m0syrws934418sgfhfldlh5sip"; depends=[GenomicFeatures Rsamtools rtracklayer]; };
exomePeak = derive { name="exomePeak"; version="1.9.1"; sha256="1lvzr8zsa61vj5qhd4yh9n8vmfw759b8gbpp6q9yxz1py1ky16y6"; depends=[GenomicAlignments GenomicFeatures Rsamtools rtracklayer]; };
explorase = derive { name="explorase"; version="1.33.0"; sha256="0405q21ivvchmb37jksv46kwxgbmyiavznizn39asv6wrsvw62az"; depends=[limma rggobi RGtk2]; };
fCI = derive { name="fCI"; version="0.99.10"; sha256="1gknc8pqznxkgdgc403s59xl6x9s8cdb5iql0q88kk8jcqc2fgyl"; depends=[FNN gtools psych rgl VennDiagram zoo]; };
fabia = derive { name="fabia"; version="2.15.0"; sha256="1631f6q30cxzaw7vqjacr44hwzrjbvk0sw3v41zagpbqbbr11swx"; depends=[Biobase]; };
facopy = derive { name="facopy"; version="1.3.0"; sha256="0nm7jds5c4p471qyzv61byl61frwnf71kkvcdrc876168bd6s9y3"; depends=[annotate cgdsr coin data_table DOSE FactoMineR ggplot2 GOstats graphite gridExtra igraph IRanges MASS nnet reshape2 Rgraphviz scales]; };
factDesign = derive { name="factDesign"; version="1.45.0"; sha256="08d7ma718s8rdbmk00jdbwn9d1g431iaff7hc4ra421drl95yql1"; depends=[Biobase]; };
@ -668,7 +676,7 @@ fastseg = derive { name="fastseg"; version="1.15.0"; sha256="12a308lr292nisf0k0w
fdrame = derive { name="fdrame"; version="1.41.0"; sha256="1zmspa2mm7scv5lx83171hdn48y9vify58jcr6nxw15nj4lqbmsd"; depends=[]; };
ffpe = derive { name="ffpe"; version="1.13.0"; sha256="0444g47cg6ci1lflmz84vjms0p918iaz65cm6whxx4z3pfjc55ls"; depends=[affy Biobase BiocGenerics lumi methylumi sfsmisc TTR]; };
flagme = derive { name="flagme"; version="1.25.0"; sha256="0jj8rba2ggimwm709m2c78rpccvp9q8hx83c026pgmrryjv8qbzc"; depends=[CAMERA gplots MASS SparseM xcms]; };
flipflop = derive { name="flipflop"; version="1.7.2"; sha256="0clwqz14lxg9m4jasjwksvs0afhv9rna2p8h91rgip5d3nhmjsp5"; depends=[GenomicRanges IRanges Matrix]; };
flipflop = derive { name="flipflop"; version="1.7.3"; sha256="0731qxr479y1acarxd16m0bdy3q0qwgbyrlvp20dvyqs4b5qfj56"; depends=[GenomicRanges IRanges Matrix]; };
flowBeads = derive { name="flowBeads"; version="1.7.0"; sha256="1knzfj14hwggvc41bba2chrjnl709bh2wxwv268mw18crc1gs140"; depends=[Biobase flowCore knitr rrcov xtable]; };
flowBin = derive { name="flowBin"; version="1.5.0"; sha256="1728qzxpssh44ayk5bgjwdwzb98xalzciq7pzlcwg1yqgyxz81xv"; depends=[BiocGenerics class flowCore flowFP limma snow]; };
flowCHIC = derive { name="flowCHIC"; version="1.3.0"; sha256="1g6kkmcja3am6dawdkmhyz9pl9xqivnp95zqxh8vd3a4la0ysazb"; depends=[EBImage flowCore ggplot2 hexbin vegan]; };
@ -682,7 +690,7 @@ flowFP = derive { name="flowFP"; version="1.27.0"; sha256="15n57slfn0z4vzqhk38mf
flowFit = derive { name="flowFit"; version="1.7.0"; sha256="079ygak8ysjh44l3gmvlc89x4argw15mlq380j77n19d3wqai8r9"; depends=[flowCore flowViz gplots kza minpack_lm]; };
flowMap = derive { name="flowMap"; version="1.7.0"; sha256="030dv51xwskrc97kkm72wxbfsq1qj4fy9nknvxaydn3y1r2wakcs"; depends=[abind ade4 doParallel Matrix reshape2 scales]; };
flowMatch = derive { name="flowMatch"; version="1.5.0"; sha256="1b81aik86m4y8n8khz7kxy2ibky7i06s9jzm4pydh41ypv6h0wv9"; depends=[Biobase flowCore Rcpp]; };
flowMeans = derive { name="flowMeans"; version="1.23.0"; sha256="0y7dkfz0wjgmyjvsvqcqb9m59xq8bzd8bcp06dd6pgvb33aqlqr4"; depends=[Biobase feature flowCore rrcov]; };
flowMeans = derive { name="flowMeans"; version="1.28.0"; sha256="038flcv69xn1yiflzl336xfjm93ca6ksgx55aj01inrnf6ks2696"; depends=[Biobase feature flowCore rrcov]; };
flowMerge = derive { name="flowMerge"; version="2.17.0"; sha256="1sc7xqp4vkgc84by4vmbj0iy0vsrwadglwxbziigjai0ijsgrvfn"; depends=[feature flowClust flowCore foreach graph Rgraphviz rrcov snow]; };
flowPeaks = derive { name="flowPeaks"; version="1.11.0"; sha256="0ib9mgfq8lmakw2g0hj0dc75ifllpf5s9yfpkq3p5f6qqa8gncqw"; depends=[]; };
flowPlots = derive { name="flowPlots"; version="1.17.0"; sha256="1y4g2kjdha6qn79cyb9mxkkj33wd2jndrpnpd1p0x1pvnjlyxhas"; depends=[]; };
@ -694,7 +702,7 @@ flowType = derive { name="flowType"; version="2.7.0"; sha256="0zrwf7h62jd5xgs0kq
flowUtils = derive { name="flowUtils"; version="1.33.0"; sha256="0r7l8fbi3p1y7ql60czlqhxx4l0fzxv50phwkr5w85jxxldk2pjm"; depends=[Biobase corpcor flowCore flowViz graph RUnit XML]; };
flowVS = derive { name="flowVS"; version="1.1.0"; sha256="0g1zmcr1wd3xccx2z1akwk177innzrngmxc5r4hjanl37l0skrpq"; depends=[flowCore flowStats flowViz]; };
flowViz = derive { name="flowViz"; version="1.33.2"; sha256="11qbpf0yw1gjzgw3pb7mnqfvwd60nms4cwrwag8h36a5whfd158c"; depends=[Biobase flowCore hexbin IDPmisc KernSmooth lattice latticeExtra MASS RColorBrewer]; };
flowWorkspace = derive { name="flowWorkspace"; version="3.15.6"; sha256="111a5kvcz3hyw7269fg6b0885g63f8r02dkzfidfcq2pg4n2sa8w"; depends=[BH Biobase BiocGenerics data_table flowCore flowViz graph gridExtra lattice latticeExtra ncdfFlow plyr RBGL RColorBrewer Rcpp Rgraphviz stringr XML]; };
flowWorkspace = derive { name="flowWorkspace"; version="3.15.12"; sha256="1fw5xg93x92acg2vimp6ks9sxqkqc4vbkghvj4shagnck2zjs0dw"; depends=[BH Biobase BiocGenerics data_table dplyr flowCore flowViz graph gridExtra lattice latticeExtra ncdfFlow plyr RBGL RColorBrewer Rcpp Rgraphviz stringr XML]; };
flowcatchR = derive { name="flowcatchR"; version="1.3.0"; sha256="0zgbnfh3sq6s8y81al379lrif67w5xffc6n3fd5y8bp2wmdqmx8b"; depends=[abind BiocParallel colorRamps EBImage rgl]; };
fmcsR = derive { name="fmcsR"; version="1.11.4"; sha256="1ah1gyrhcyv4kqxi4n8yj14mgjh6v9l820k5hzb7fwbw74kh2pa5"; depends=[BiocGenerics ChemmineR RUnit]; };
focalCall = derive { name="focalCall"; version="1.3.0"; sha256="1g3vk72xnzy2vsjjq7dnmmxiy29qg2bqij1iim9psb2zd6w387r5"; depends=[CGHcall]; };
@ -710,7 +718,7 @@ gaggle = derive { name="gaggle"; version="1.37.0"; sha256="1429xffj08m3dgfp6z34n
gaia = derive { name="gaia"; version="2.13.0"; sha256="10vpz16plzi651aj1f5h3iwz6nzrrdnl9sgx3sgv5wmks2haqij4"; depends=[]; };
gaucho = derive { name="gaucho"; version="1.5.0"; sha256="0kl8fw1n6dkqmrjp0xri3w2fhx25llrjag7j50m2xh371zfw9chc"; depends=[GA graph heatmap_plus png Rgraphviz]; };
gcrma = derive { name="gcrma"; version="2.41.0"; sha256="03ncgd26hmj4l0mnnif1cf5qg99ir66d0mafx7wamrr930m17v8x"; depends=[affy affyio Biobase BiocInstaller Biostrings XVector]; };
gdsfmt = derive { name="gdsfmt"; version="1.5.1"; sha256="04pp9lw0548243k6almy4ckwv7sd805b7kkp87dq3z087h7287s7"; depends=[]; };
gdsfmt = derive { name="gdsfmt"; version="1.5.6"; sha256="0xncblhsfzwzxmki0mir6khpjb4d5sjc452br8jq0hp9khl9j937"; depends=[]; };
geNetClassifier = derive { name="geNetClassifier"; version="1.9.2"; sha256="04k1j2hqbs75k250i8b17bb8b84mij0hyb3yk1jl1368mpn5vmhc"; depends=[Biobase e1071 EBarrays minet]; };
geecc = derive { name="geecc"; version="1.3.0"; sha256="0s955yg31papyny42nnqq711hawk5nn3dqgsf24ldz93vjiif9dr"; depends=[gplots hypergea MASS]; };
genArise = derive { name="genArise"; version="1.45.0"; sha256="07xyy6wa22sa0ziqvy1dvpmpq11j56aw70kvj834da003yvabmg1"; depends=[locfit tkrplot xtable]; };
@ -720,8 +728,8 @@ genefilter = derive { name="genefilter"; version="1.51.0"; sha256="0zrav2zw7v67i
genefu = derive { name="genefu"; version="1.19.0"; sha256="05rzq0dy4v7z57zqdg9v2csj3ncv2n76igbz2a9nvjpmqrgfcqlc"; depends=[amap biomaRt mclust survcomp]; };
geneplotter = derive { name="geneplotter"; version="1.47.0"; sha256="03vl60rhhfh8imp0ihx83gq9r64gdnh2gjdm7pzi4yc03afqgaw8"; depends=[annotate AnnotationDbi Biobase BiocGenerics lattice RColorBrewer]; };
genoCN = derive { name="genoCN"; version="1.21.0"; sha256="10q16kch3gn6phx1zk3aii87f4liy5l6mp0kvjf29x6aam11l7c7"; depends=[]; };
genomation = derive { name="genomation"; version="1.1.4"; sha256="1217xm5rqngag4r2r95z7wxwmdlassghwkxqpljqnangix4c0h96"; depends=[GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges plyr readr reshape2 Rsamtools rtracklayer]; };
genomeIntervals = derive { name="genomeIntervals"; version="1.25.0"; sha256="1dy71hdqw02kv5rqa80w4bfbn247hj6fqqsc12qimk3l60z38rpr"; depends=[BiocGenerics intervals]; };
genomation = derive { name="genomation"; version="1.1.5"; sha256="0x4pgs7g46giv6z92hqa0fgq3fbw5p2jm5h8qzbwsvir3y7fnf79"; depends=[GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges plyr readr reshape2 Rsamtools rtracklayer]; };
genomeIntervals = derive { name="genomeIntervals"; version="1.25.2"; sha256="145xg7pjihfg6qmjfmswf33hkxsnq8ml02x6s6y90giyxlmjqisk"; depends=[BiocGenerics GenomeInfoDb GenomicRanges intervals IRanges S4Vectors]; };
genomes = derive { name="genomes"; version="2.15.0"; sha256="1a172fz97b6xg4w91dcjbdr9kx0grzf71qn2j7zlyz52dcqppybb"; depends=[Biostrings GenomicRanges IRanges RCurl XML]; };
genoset = derive { name="genoset"; version="1.23.2"; sha256="0j23ym7v47fv2f2j25hfc4xh1113614ixdd1accx9gindbqf72cl"; depends=[Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
gespeR = derive { name="gespeR"; version="1.1.0"; sha256="0hp2pw4z5kgj4av339v7r43is082c47ms422pwwa5f2pljijz2z6"; depends=[Biobase biomaRt cellHTS2 doParallel foreach ggplot2 glmnet Matrix reshape2]; };
@ -736,17 +744,17 @@ goseq = derive { name="goseq"; version="1.21.1"; sha256="175xg4qyy2iq9vmxsvd120q
gpls = derive { name="gpls"; version="1.41.0"; sha256="050db8ag8wpngfkw686r9vjvdgbpz0slrdnmkb0vcm5ijzm172b2"; depends=[]; };
gprege = derive { name="gprege"; version="1.13.0"; sha256="0z27521mjn5ipjq8wi3fbh2qw4k1q694l8268f8lypr9f357i1q4"; depends=[gptk]; };
graph = derive { name="graph"; version="1.47.2"; sha256="0db15kd5qf993qdbr7dl2wbw6bgyg3kiqvd1iziqdq6d2vvbpzbj"; depends=[BiocGenerics]; };
graphite = derive { name="graphite"; version="1.15.0"; sha256="1nzyrc3cwy35m7ijr5pjanvw868yw2d7sl9h3ns8w70af8ih6z14"; depends=[AnnotationDbi BiocGenerics graph]; };
graphite = derive { name="graphite"; version="1.15.1"; sha256="1q3ybshd9yxivs1b5vj659c45qa8bf7r1dy3idg8g7glh9f2bgnl"; depends=[AnnotationDbi BiocGenerics graph]; };
groHMM = derive { name="groHMM"; version="1.3.0"; sha256="0kx574xs0k51wwkvm6rbrrgr76ziwkkyqhiy076yzfsfkm3d1jvf"; depends=[GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; };
gtrellis = derive { name="gtrellis"; version="1.1.0"; sha256="0cr4p22h0xh18pbr1jnz9dr6nv1q5a2bnx4nq5pz9jnn70lg7384"; depends=[circlize GetoptLong]; };
gwascat = derive { name="gwascat"; version="2.1.3"; sha256="0wjl53zfrn6adwlfrqxj3nqndg753pi03dsm7xxjv7x2rkx1z1k8"; depends=[AnnotationHub BiocGenerics Biostrings GenomeInfoDb GenomicRanges gQTLstats Gviz IRanges Rsamtools rtracklayer S4Vectors snpStats VariantAnnotation]; };
gtrellis = derive { name="gtrellis"; version="1.1.1"; sha256="17jflcq97a3a7k735klj6pphn6ixyshggwi0n7b45jgkqi9j5s08"; depends=[circlize GetoptLong]; };
gwascat = derive { name="gwascat"; version="2.1.4"; sha256="13hvh6rvlh13n9dxx9g1q68qz4mxsvv4sh0kc1931b3vz2mfs0m0"; depends=[AnnotationHub BiocGenerics Biostrings GenomeInfoDb GenomicRanges gQTLstats Gviz IRanges Rsamtools rtracklayer S4Vectors snpStats VariantAnnotation]; };
h5vc = derive { name="h5vc"; version="2.3.0"; sha256="1cl00k13x03sm60gfkxmaf6ba9kw4186cnik08zn446fipxqypla"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges reshape rhdf5 Rsamtools S4Vectors]; };
hapFabia = derive { name="hapFabia"; version="1.11.0"; sha256="1jbj1bxqmvldpbbyq6d854srvzsr14jva1711zn4387b407knz7w"; depends=[Biobase fabia]; };
hiAnnotator = derive { name="hiAnnotator"; version="1.3.2"; sha256="104d6wp331dvsdk5p9l7m70xr9jrwx0nzlrapi95c0p1nr3wr7bl"; depends=[BSgenome dplyr foreach GenomicRanges ggplot2 iterators rtracklayer scales]; };
hiReadsProcessor = derive { name="hiReadsProcessor"; version="1.3.0"; sha256="16gcjaiw8j82y5wzcbhh3yjym8xi4dqsf30i64ah6rb30i3bk716"; depends=[BiocGenerics BiocParallel Biostrings GenomicAlignments GenomicRanges hiAnnotator plyr rSFFreader sonicLength xlsx]; };
hierGWAS = derive { name="hierGWAS"; version="0.99.2"; sha256="1i3ykpslp79y1v156bja971z3g3v1yb7bb2w26gv1p1kd8f57s6d"; depends=[fastcluster fmsb glmnet hlr]; };
hierGWAS = derive { name="hierGWAS"; version="0.99.2"; sha256="1i3ykpslp79y1v156bja971z3g3v1yb7bb2w26gv1p1kd8f57s6d"; depends=[fastcluster fmsb glmnet]; };
hopach = derive { name="hopach"; version="2.29.0"; sha256="08hfq74s3a4q94awhw6fiwlfnnv3rhkfpz56jbcyp6bi6y1rrp9d"; depends=[Biobase BiocGenerics cluster]; };
hpar = derive { name="hpar"; version="1.11.0"; sha256="025hdmb70h2zf4g06spfdm09ni3i4qc21c2hp0mjdp3b2y2f9g9r"; depends=[]; };
hpar = derive { name="hpar"; version="1.11.1"; sha256="1a00li932y6bgv9a9avpbyxm7h6fxjfgj3gazf0kh1zc5w0r2r1g"; depends=[]; };
htSeqTools = derive { name="htSeqTools"; version="1.15.1"; sha256="0pv6csw7bgknjm0q42hrf3x22bx3xs0xm9hq9i46plwglq6c8kvn"; depends=[Biobase BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges MASS]; };
hyperdraw = derive { name="hyperdraw"; version="1.21.0"; sha256="0w1rcaw5fysj257c8ybcvmrdayvkcmfl670ysg2wcp8nrgv6z7vg"; depends=[graph hypergraph Rgraphviz]; };
hypergraph = derive { name="hypergraph"; version="1.41.0"; sha256="06fvmda8x81bv5bn21pmvpfx9ni01l23q1ph9rh3qj803mwa0d72"; depends=[graph]; };
@ -766,7 +774,7 @@ impute = derive { name="impute"; version="1.43.0"; sha256="1wp02zd2vgpkalz830kah
inSilicoDb = derive { name="inSilicoDb"; version="2.5.0"; sha256="1w5irx042z8if0pnvw9ra4a0hm0m1nbc2s9l2j59ww9l2qhj8hiq"; depends=[Biobase RCurl rjson]; };
inSilicoMerging = derive { name="inSilicoMerging"; version="1.13.0"; sha256="0zaqwachxn3anbjyn0akv0n2djg08475cdxz7c44ja635r1f6y1j"; depends=[Biobase]; };
intansv = derive { name="intansv"; version="1.9.0"; sha256="0vb5hls1yyw0x0ff2xcjmxplg0gar9g9xvs1bqw96bf9akcr12r9"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; };
interactiveDisplay = derive { name="interactiveDisplay"; version="1.7.1"; sha256="0xqghsy7s7m2xkngsqjzxrfvs7jy2bqprvx4qm2a8d24q392abs0"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; };
interactiveDisplay = derive { name="interactiveDisplay"; version="1.7.2"; sha256="1ql4qr5m1xsn3z57p2ndfc4b0zmxgjj0d3gb937ikfljm43jkwyk"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; };
interactiveDisplayBase = derive { name="interactiveDisplayBase"; version="1.7.0"; sha256="0032ljfx6pj0c11imfhxsxvrcn3gwyb6j29xl8xv48x8z44r0vas"; depends=[BiocGenerics shiny]; };
inveRsion = derive { name="inveRsion"; version="1.17.0"; sha256="1km1h75dh5q505x1ddlhvyqxy4c10wvlviiz2l8sv3g3m9mbd26h"; depends=[haplo_stats]; };
iontree = derive { name="iontree"; version="1.15.0"; sha256="0frq4f357n5w08nwz3m7s0hv858kgcnlvxb4907yrg1b11zpfvmm"; depends=[rJava RSQLite XML]; };
@ -779,14 +787,14 @@ kebabs = derive { name="kebabs"; version="1.3.3"; sha256="10pnr5fd2ni4w69qp30q81
keggorthology = derive { name="keggorthology"; version="2.21.0"; sha256="1d3dz61llgmdnyqxqwv03pacfs97lzynzpjpmn7grf7bbpybjk2q"; depends=[AnnotationDbi DBI graph]; };
lapmix = derive { name="lapmix"; version="1.35.0"; sha256="1sps41l210h782bry6n8h55ghnlqn7s5dx0bx2805y5izz01linm"; depends=[Biobase]; };
les = derive { name="les"; version="1.19.0"; sha256="1b3zcvflwyybrh9pf33a0fn5qz6918sszjf0n666iqd3hh7zph8z"; depends=[boot fdrtool gplots RColorBrewer]; };
limma = derive { name="limma"; version="3.25.9"; sha256="19kzyja25bchvcnbl8g2xfzi1rypja44312g94qssiyanlw1i2bp"; depends=[]; };
limma = derive { name="limma"; version="3.25.12"; sha256="1gl13qnbj4w2bzdxf1ml603r1ccyq0wv1ynlrgb8j9sa7z228ri9"; depends=[]; };
limmaGUI = derive { name="limmaGUI"; version="1.45.0"; sha256="05pqzb5nq3paddq2zw80gvdaf8rvynga8zs24rwzjpz3ylakqngr"; depends=[AnnotationDbi BiocInstaller gcrma limma R2HTML tkrplot xtable]; };
lmdme = derive { name="lmdme"; version="1.11.0"; sha256="0j41rfvbhz31vniax7njnslxd94lws4jjfv3hc2s1ihxnj41dcma"; depends=[limma pls]; };
logicFS = derive { name="logicFS"; version="1.39.0"; sha256="1sz4bxsg76437j42i6cpbqvj5a35q7dwhya4yh1gmknqjrrcrv56"; depends=[LogicReg mcbiopi]; };
logitT = derive { name="logitT"; version="1.27.0"; sha256="13gglwkvwrc5xr44ynz10qzyksry0wamk9mjlsfb18c2ncbnyypq"; depends=[affy]; };
lol = derive { name="lol"; version="1.17.1"; sha256="0adj2bg8akb3z0w3wqj6bdlypf9c587k5c2npx0l21hgy4qv7p8k"; depends=[Matrix penalized]; };
lpNet = derive { name="lpNet"; version="2.1.1"; sha256="15v3mpxrm1qq3hnwwnahziafpy83b35i69qyggdvzszwg1cpn5vi"; depends=[lpSolve nem]; };
lumi = derive { name="lumi"; version="2.21.1"; sha256="16cg8zsfvw4fc51zr27ymp7a0qc59y0cvp2j7bsfw6ip0avmgkgk"; depends=[affy annotate AnnotationDbi Biobase DBI GenomicFeatures GenomicRanges KernSmooth lattice MASS methylumi mgcv nleqslv preprocessCore RSQLite]; };
lpNet = derive { name="lpNet"; version="2.1.2"; sha256="0qy2ardh00gf3xkhqphvmdsnsxa4pjrdpcxpjs53nw68bcsbgy9g"; depends=[lpSolve nem]; };
lumi = derive { name="lumi"; version="2.21.2"; sha256="0nfkzf11lnpvyqng8ns6nf23qkap04fir8cbqngnzm6yddfk33dq"; depends=[affy annotate AnnotationDbi Biobase DBI GenomicFeatures GenomicRanges KernSmooth lattice MASS methylumi mgcv nleqslv preprocessCore RSQLite]; };
mAPKL = derive { name="mAPKL"; version="1.1.0"; sha256="1knjvwd0z4i70py0dqcngz56j78ylhcxsw8dyxj80ns5jzsdppbx"; depends=[AnnotationDbi apcluster Biobase clusterSim e1071 igraph limma multtest parmigene]; };
mBPCR = derive { name="mBPCR"; version="1.23.0"; sha256="0c0idj213l8gwxkh9sb03dr4jhlbwvkpghldccbjrqnk4jqs4zpp"; depends=[Biobase oligoClasses SNPchip]; };
mQTL_NMR = derive { name="mQTL.NMR"; version="1.3.0"; sha256="05q3p6pxi5x89z3zyrvdv5p2lzwr3as3zwcg8k0zm70liyczqcbx"; depends=[GenABEL MASS outliers qtl]; };
@ -819,16 +827,16 @@ metaseqR = derive { name="metaseqR"; version="1.9.0"; sha256="0p8bpnjm73jkng2xry
methVisual = derive { name="methVisual"; version="1.21.0"; sha256="18kin1ibcc4ilfh59qgb0zilhvhvs0a1gmbg0lbvj2r0kbsk1ryy"; depends=[Biostrings ca gridBase gsubfn IRanges plotrix sqldf]; };
methyAnalysis = derive { name="methyAnalysis"; version="1.11.0"; sha256="0ka0svxvb76j0xkdx4pbwf2cyplihh45mb953csrapyh5r6hxwkn"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt genefilter GenomeInfoDb GenomicFeatures GenomicRanges genoset Gviz IRanges lumi methylumi rtracklayer S4Vectors VariantAnnotation]; };
methylMnM = derive { name="methylMnM"; version="1.7.0"; sha256="08y13kkmafn2h55wwkgs1mpskb4i2wpxzzgjdr9gb3ns06qc9799"; depends=[edgeR statmod]; };
methylPipe = derive { name="methylPipe"; version="1.3.3"; sha256="1skds6ac2s2grb3s5ay0b6j91qmpag8cmqqh0plnqjvh5zdsi733"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; };
methylumi = derive { name="methylumi"; version="2.15.1"; sha256="02bgqja3zzd3ps8a2r6k9whdvnzi4h44vjmrjgqljmmr40pspqqw"; depends=[annotate AnnotationDbi Biobase BiocGenerics genefilter GenomeInfoDb GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; };
methylPipe = derive { name="methylPipe"; version="1.3.4"; sha256="17y9xsvl6wgm7kn8g35h3zh7bcqhy7qp2lia6dzx609i04a9br9f"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; };
methylumi = derive { name="methylumi"; version="2.15.2"; sha256="174hikk5flwylifv7n8n67aps4np06klw240bdzfr347r8yrvikp"; depends=[annotate AnnotationDbi Biobase BiocGenerics genefilter GenomeInfoDb GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; };
mgsa = derive { name="mgsa"; version="1.17.0"; sha256="1nic4bgk3g3j2l6vr3i3msmid2bz0n7bq8f8zq26n45sr37wb4wq"; depends=[gplots]; };
miRNApath = derive { name="miRNApath"; version="1.29.0"; sha256="07r37gzn0y5cp4awj2i638i2cn019rnp7b4hnaqi3gc71sdzb25c"; depends=[]; };
miRNAtap = derive { name="miRNAtap"; version="1.3.0"; sha256="0hmnhbbai04wp8hxrpgq04czfx2c49aihq7iiz86x9hzlj6xhgn6"; depends=[AnnotationDbi DBI plyr RSQLite sqldf stringr]; };
microRNA = derive { name="microRNA"; version="1.27.0"; sha256="1akq1yxc03v7jmpypmr8a9lx5h2nfdjp1y0433lyffbd49wia2gm"; depends=[Biostrings]; };
minet = derive { name="minet"; version="3.27.0"; sha256="1wnn3nlpa0ymk465ax2s65i3w9xplhwssvng9qs7p3v2z72p9nqp"; depends=[infotheo]; };
minfi = derive { name="minfi"; version="1.15.7"; sha256="09v8flkn0ja1q9glzfa5bsaflvx7w240w38fp59dgknz4xr1zp3r"; depends=[beanplot Biobase BiocGenerics Biostrings bumphunter genefilter GenomeInfoDb GenomicRanges GEOquery illuminaio IRanges lattice limma MASS matrixStats mclust mixOmics nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; };
minfi = derive { name="minfi"; version="1.15.9"; sha256="1q21b57iw8lbzbjq96qmlmccijz0apr9clasrz4nbmbgyn97gba2"; depends=[beanplot Biobase BiocGenerics Biostrings bumphunter genefilter GenomeInfoDb GenomicRanges GEOquery illuminaio IRanges lattice limma MASS matrixStats mclust mixOmics nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; };
mirIntegrator = derive { name="mirIntegrator"; version="0.99.5"; sha256="0r8l1lgf9rdxnr0dvc8r05ahjf3q0r4syy9mzx4p3f04s0c78q3h"; depends=[AnnotationDbi ggplot2 graph Rgraphviz ROntoTools]; };
missMethyl = derive { name="missMethyl"; version="1.3.1"; sha256="07l7jnw5ixlhhphrxhalkh50swc8jr4pfkgvzf33hiid4g9jkqsk"; depends=[limma methylumi minfi ruv statmod stringr]; };
missMethyl = derive { name="missMethyl"; version="1.3.2"; sha256="05xk70z813jgwz9darqwh0f9ybycq9krig486b3751dd0xnjgmcq"; depends=[limma methylumi minfi ruv statmod stringr]; };
mitoODE = derive { name="mitoODE"; version="1.7.0"; sha256="182ifqh1g1yz8rbsxdqgk4hzlz3dwy0d03iklbg39cxy6qhgxqg4"; depends=[KernSmooth MASS minpack_lm]; };
mmnet = derive { name="mmnet"; version="1.7.0"; sha256="0za8a3j2fzyi15hd7l3ccw5qy3lyl7vihbcbixaw2kb81hmpphsa"; depends=[Biobase biom flexmix ggplot2 igraph KEGGREST Matrix plyr RCurl reshape2 RJSONIO stringr XML]; };
mogsa = derive { name="mogsa"; version="1.1.3"; sha256="0rzqlm0c4skjgic334nfd2s7p0xk86mv1zbwjk036nwf5lnmdd0i"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; };
@ -841,11 +849,11 @@ msmsEDA = derive { name="msmsEDA"; version="1.7.0"; sha256="1hywj0vvrqq1zg62gr1r
msmsTests = derive { name="msmsTests"; version="1.7.0"; sha256="1qvi91shpy02irppq6g6lq43sp3rk2j7n1nfnm2p9767rdhbj13b"; depends=[edgeR msmsEDA MSnbase qvalue]; };
mtbls2 = derive { name="mtbls2"; version="0.99.8"; sha256="0x5slfyn6gq5bhvpi820g93q2xzs8hb3s5yw4inpra0wpdmnvmkz"; depends=[]; };
multiscan = derive { name="multiscan"; version="1.29.0"; sha256="0rp1nc8vjr8b0v9bcwrnsvdfklan0zc2cilrmwz1ikz0k5gnc0sq"; depends=[Biobase]; };
multtest = derive { name="multtest"; version="2.25.1"; sha256="07ywm87prs1lyndwdsccswfhfz28ahasalwhn95vdkk50r7d3drf"; depends=[Biobase BiocGenerics MASS survival]; };
multtest = derive { name="multtest"; version="2.25.2"; sha256="1gby3am0rp62lsijhbr8yx8y457yhrv2ghdb41kl53r59mw8ba4z"; depends=[Biobase BiocGenerics MASS survival]; };
muscle = derive { name="muscle"; version="3.11.0"; sha256="1s3apdcd0qj08bswn7smj7b93yv9qar7wrzyfkp5z3m16jgz979x"; depends=[Biostrings]; };
mvGST = derive { name="mvGST"; version="1.3.0"; sha256="1chskyx9hgymxg57p6y98rw743lapssx18axvl0r9f2zsmmfz9bn"; depends=[annotate AnnotationDbi GOstats gProfileR graph Rgraphviz stringr topGO]; };
mygene = derive { name="mygene"; version="1.4.0"; sha256="1f1nqf2h679z6j9pshc393qygdygs3s4spz2n7iwr56aqkbnccf6"; depends=[GenomicFeatures Hmisc httr jsonlite S4Vectors sqldf]; };
mzID = derive { name="mzID"; version="1.7.0"; sha256="0gkkyxb7zk0c8ynddxxv7bym2lzpn8yn1ww6xf9bp9ax1zc021wk"; depends=[doParallel foreach iterators plyr XML]; };
mygene = derive { name="mygene"; version="1.5.1"; sha256="0f1ck375fqbz3ydjjg9qd9av8jbpc840nv3j83qic8g3r2pck8ij"; depends=[GenomicFeatures Hmisc httr jsonlite S4Vectors sqldf]; };
mzID = derive { name="mzID"; version="1.7.1"; sha256="1pp0zfffz91g16y1kr81mbham64g00mm3q539ykj5az34g5q1fcm"; depends=[doParallel foreach iterators plyr ProtGenerics XML]; };
mzR = derive { name="mzR"; version="2.3.1"; sha256="19piyqgdxpi777nd4860d6mp0g4zzcf3wf7q7ilm99jqav9lfrn8"; depends=[Biobase BiocGenerics ProtGenerics Rcpp zlibbioc]; };
ncdfFlow = derive { name="ncdfFlow"; version="2.15.2"; sha256="0s65c26r6q8di73iwpkrx4g3d9dy6v18vna7yy7di5vsgy0phr9l"; depends=[BH Biobase flowCore flowViz Rcpp RcppArmadillo zlibbioc]; };
neaGUI = derive { name="neaGUI"; version="1.7.0"; sha256="198b0vrr5qp66z4sccwy6rh8sjxpw3qjkdryygg1baxq91ra76p1"; depends=[hwriter]; };
@ -861,14 +869,14 @@ npGSEA = derive { name="npGSEA"; version="1.5.1"; sha256="0yh0cj6sj4r8sqv8xszpzw
nucleR = derive { name="nucleR"; version="2.1.0"; sha256="0w9hmrahbk14gijv1ngps70m5f9lijbqr1lgpdbrjcqn7ff96yrq"; depends=[Biobase BiocGenerics GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; };
nudge = derive { name="nudge"; version="1.35.0"; sha256="1135k3nz8613vrib7fxmn669f31h5k1szy0r20qwmji28806arrk"; depends=[]; };
occugene = derive { name="occugene"; version="1.29.0"; sha256="1vlm93r8xxp4dl8yv3hcg618vc5s7wbn7kcw4qpk8kyqaqcjqw2r"; depends=[]; };
oligo = derive { name="oligo"; version="1.33.0"; sha256="0110j0lv1n1m81z3lvyqb5y0zzjda34i5xb5rm0n1s641f5cw82v"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; };
oligo = derive { name="oligo"; version="1.33.1"; sha256="1vi1jy6nb34sg4hhqwirddg1rgm6rhf3mx1fcjq8blfx9mz6nvzb"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; };
oligoClasses = derive { name="oligoClasses"; version="1.31.1"; sha256="0likyfm4xq6s34l9pj7n3my04zrfvrhrcwd1ydbg7jpss2piy4lm"; depends=[affyio Biobase BiocGenerics BiocInstaller Biostrings ff foreach GenomicRanges IRanges RSQLite S4Vectors SummarizedExperiment]; };
omicade4 = derive { name="omicade4"; version="1.9.3"; sha256="00dr419qd563d75srypc02j6m5v281995mrh0r6fylz5bmi9bbks"; depends=[ade4 made4]; };
oneChannelGUI = derive { name="oneChannelGUI"; version="1.35.0"; sha256="1diclgl4zkzzyz705cyqx983bw4zqw03rx7fn9515w0ifl0bk1r4"; depends=[affylmGUI Biobase Biostrings chimera IRanges Rsamtools siggenes tkrplot tkWidgets]; };
ontoCAT = derive { name="ontoCAT"; version="1.21.0"; sha256="10d0a0fxg2h9gf6d1jbilxxg8irbqb1k526689qkdn2zh0qjvv04"; depends=[rJava]; };
openCyto = derive { name="openCyto"; version="1.7.0"; sha256="11hhgxfwl6z7s6dzvr9bs3px21mwwv0b203snv6xgzan4wh11iyw"; depends=[Biobase clue data_table flowClust flowCore flowStats flowViz flowWorkspace graph gtools ks lattice MASS ncdfFlow plyr R_utils RBGL RColorBrewer Rcpp rrcov]; };
oposSOM = derive { name="oposSOM"; version="1.5.1"; sha256="055ya0xvld0c7sl0s9cz7zmpw3ayqbskbya730cskzw5nz104lpg"; depends=[ape Biobase biomaRt fastICA fdrtool igraph KernSmooth pixmap scatterplot3d som]; };
pRoloc = derive { name="pRoloc"; version="1.9.2"; sha256="1q9xaxz8if6ihs5a3ihbk2ayil1fxs8s34ij7gw7sv8hy6pvpm9s"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class e1071 FNN ggplot2 gtools kernlab knitr lattice MASS mclust MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; };
openCyto = derive { name="openCyto"; version="1.7.2"; sha256="1x92yam7zdmsf6x0xqydwz70qmh3gzzi64mbiwrihr8abcjmhjhd"; depends=[Biobase clue data_table flowClust flowCore flowStats flowViz flowWorkspace graph gtools ks lattice MASS ncdfFlow plyr R_utils RBGL RColorBrewer Rcpp rrcov]; };
oposSOM = derive { name="oposSOM"; version="1.5.2"; sha256="0zvclv05sfgk0mq169igaqhqmx2hqj3iwrxrjgryy276xjywhxcr"; depends=[ape Biobase biomaRt fastICA fdrtool igraph KernSmooth pixmap scatterplot3d som]; };
pRoloc = derive { name="pRoloc"; version="1.9.3"; sha256="09pi362w1vfcx6fsr6bbsjqq9wq93dzhw0myavxsj11g3pnqh66n"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class e1071 FNN ggplot2 gtools kernlab knitr lattice MASS mclust MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; };
pRolocGUI = derive { name="pRolocGUI"; version="1.3.0"; sha256="1k7r8fhj4fqizk1w76mfcdd9sj3y7vxiq3kzfrkbk674gl1jsgmq"; depends=[MSnbase pRoloc shiny]; };
paircompviz = derive { name="paircompviz"; version="1.7.0"; sha256="0sf80ji20q6kaqw2747an9b51xxwhl55yj5y7q6j68gif1ndkzl4"; depends=[Rgraphviz]; };
pandaR = derive { name="pandaR"; version="1.1.0"; sha256="03aa0s1mifq5hyg4xshbjqz9javphgb11135zvfg8cqdq34dzg4m"; depends=[]; };
@ -900,7 +908,7 @@ plier = derive { name="plier"; version="1.39.0"; sha256="0ws919mrm8q719ssmxsxb4m
plrs = derive { name="plrs"; version="1.9.0"; sha256="1lwnzbq2f75zh191g8zjljajq1qypvi2abzjsq5vfyqr3jnzpah8"; depends=[Biobase BiocGenerics CGHbase ic_infer marray quadprog Rcsdp]; };
plw = derive { name="plw"; version="1.29.0"; sha256="0rc31452gnzxxz5rwg932i680xx8azdvailn4id6fnkr5xqr1d5a"; depends=[affy MASS]; };
pmm = derive { name="pmm"; version="1.1.0"; sha256="05vix8j0rpvnyfkdb043d24vrbpdvkjmb8cqpqbg0knja178c8cg"; depends=[lme4]; };
podkat = derive { name="podkat"; version="1.1.2"; sha256="1jqb55mnys66grhkx9d5yzf4c6x1vb0g0arfibv7ayzlsgw1cwxx"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rsamtools]; };
podkat = derive { name="podkat"; version="1.1.3"; sha256="0q2in4lbd1y421gn0758kv54i5c92hxlhi14pr70n2jbk2izqf4d"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rsamtools]; };
polyester = derive { name="polyester"; version="1.5.0"; sha256="1qpnabv5c7wi1qw8lp3nvnv4dass7g6chz6blyg3k572p0zhzm47"; depends=[Biostrings IRanges limma logspline S4Vectors]; };
ppiStats = derive { name="ppiStats"; version="1.35.0"; sha256="10c3lnipwnpg0j938c1hxz1qgysc4n56lmsw7n6cra57zkr0whxj"; depends=[Biobase Category graph lattice RColorBrewer ScISI]; };
prada = derive { name="prada"; version="1.45.0"; sha256="140fv2yrgdf9ab26k14n0l6yd03vidi5y3dn4d1ybkyc66rx8xpa"; depends=[Biobase BiocGenerics MASS RColorBrewer rrcov]; };
@ -915,7 +923,7 @@ proteoQC = derive { name="proteoQC"; version="1.5.0"; sha256="1khhy7y1w8pyccc3x1
puma = derive { name="puma"; version="3.11.0"; sha256="1dgi08p70fifsa42gj4jd1651d8laq03fa52qvicsmwkjxxyd83w"; depends=[affy affyio Biobase mclust oligo]; };
pvac = derive { name="pvac"; version="1.17.0"; sha256="0r9p96lp15883xix9gbr36pcjy7zg8yniag257mps58xagld0162"; depends=[affy Biobase]; };
pvca = derive { name="pvca"; version="1.9.0"; sha256="1xi72iwarx3784l5hjf7vmwindsz4fbah5g9y2a2fllr5mjh421b"; depends=[Biobase lme4 Matrix vsn]; };
pwOmics = derive { name="pwOmics"; version="1.1.7"; sha256="1750jxrdb801ipzkr8y2zkgr79bzxxzsnyvcj4jamifljv49gz5c"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots igraph rBiopaxParser STRINGdb]; };
pwOmics = derive { name="pwOmics"; version="1.1.8"; sha256="0nayswisdia4p4vxnzf5zgcgpld53rfcb3v7yrxyak4adp0d3lqd"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots igraph rBiopaxParser STRINGdb]; };
qcmetrics = derive { name="qcmetrics"; version="1.7.0"; sha256="1qrhl7w131yzkvck9ifqf966lmh8f9y9xlmrg2g3dgh29vgww54b"; depends=[Biobase knitr Nozzle_R1 pander S4Vectors xtable]; };
qpcrNorm = derive { name="qpcrNorm"; version="1.27.0"; sha256="0lmk9ksfrrw8zvhq20kg3kv0aqr8wx342nmw7zxvjv7l8z3d33sf"; depends=[affy Biobase limma]; };
qpgraph = derive { name="qpgraph"; version="2.3.3"; sha256="1ykijxsg8yc3d1k9ip0p0zqrv75l9ps6q7h1naqw9sjhk6nqwf0g"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; };
@ -933,7 +941,7 @@ rMAT = derive { name="rMAT"; version="3.19.0"; sha256="0nhmf1hbiqwzb9035405f8asn
rRDP = derive { name="rRDP"; version="1.3.0"; sha256="0q373nfs4ynjnmq9rp0c0ficnnylwb2gf1j0bzlnxcd2cwz215zv"; depends=[Biostrings]; };
rSFFreader = derive { name="rSFFreader"; version="0.17.1"; sha256="105qlrjq4777k4ps2h7gmr2ywix9skrylhg4ds3dw0pi6n9a4w8n"; depends=[Biostrings IRanges S4Vectors ShortRead XVector]; };
rTANDEM = derive { name="rTANDEM"; version="1.9.0"; sha256="08r73kv83w8rfglbqf2zvczj4yix7sfhvrz93wk22nry04jfgccr"; depends=[data_table Rcpp XML]; };
rTRM = derive { name="rTRM"; version="1.7.0"; sha256="0lqzxcgz36dsvqlx218cc9h785vw3czxsq93z388adraw7i0r55x"; depends=[AnnotationDbi igraph RSQLite]; };
rTRM = derive { name="rTRM"; version="1.7.1"; sha256="06p38i0hif1kjsy4xa88jhfl5giprq8gfa15zh1yv1qdqhaf1v1m"; depends=[AnnotationDbi DBI igraph RSQLite]; };
rTRMui = derive { name="rTRMui"; version="1.7.0"; sha256="132cm40hxhb4apdidifbw90jyxhlz0dqxgqsr6awv8q6dy9jpfw4"; depends=[MotifDb rTRM shiny]; };
rain = derive { name="rain"; version="1.3.0"; sha256="0ak8wbhsglnylzy1jzh9hb2yxqjzmspvj98x10vf3qmgbqc30i4y"; depends=[gmp multtest]; };
rama = derive { name="rama"; version="1.43.0"; sha256="1siqzb0b9j51b06aijz85xn6c9v4dqvcw7scmrlfpf18dihqaig1"; depends=[]; };
@ -941,27 +949,28 @@ randPack = derive { name="randPack"; version="1.15.0"; sha256="0m9729h3fia15rcgx
rbsurv = derive { name="rbsurv"; version="2.27.0"; sha256="1v97vrralg445zn8s3km7vmhlxhkv8bdwcj90fyvd6kfk7gm4xc7"; depends=[Biobase survival]; };
rcellminer = derive { name="rcellminer"; version="1.1.1"; sha256="04ddqp6kxsdhanp7xfifhcvm8hirb915wl15m2qzwx5xy4l97vry"; depends=[Biobase fingerprint gplots rcdk shiny stringr]; };
reb = derive { name="reb"; version="1.47.0"; sha256="1lxl4mzfz9b7hmq4fd7bsplxmknb8a3ffwdpddik3wry8rpqzmsd"; depends=[Biobase idiogram]; };
regionReport = derive { name="regionReport"; version="1.3.4"; sha256="0n5l83izk4xr59f1npp1rwhghn4g19yy8wn2h7q2pb4hwdqa3sfd"; depends=[bumphunter derfinder derfinderPlot devtools GenomeInfoDb GenomicRanges ggbio ggplot2 gridExtra IRanges knitcitations knitr knitrBootstrap mgcv RColorBrewer rmarkdown whisker]; };
regionReport = derive { name="regionReport"; version="1.3.8"; sha256="0gpifx0x2khqacmmxpxps09scdqfm4n0fns2jx0v54iabhswgafj"; depends=[bumphunter derfinder derfinderPlot devtools GenomeInfoDb GenomicRanges ggbio ggplot2 gridExtra IRanges knitcitations knitr knitrBootstrap mgcv RColorBrewer rmarkdown whisker]; };
regioneR = derive { name="regioneR"; version="1.1.1"; sha256="1wylrkqiv5lc9rw3mc1by88ckx437jwhlgyg5kasvpry003rm72c"; depends=[BSgenome GenomicRanges memoise rtracklayer]; };
rfPred = derive { name="rfPred"; version="1.7.0"; sha256="0k1z7bqdjmm668kipz8c74kd9k1vw2pcjbirxdi88clrclz3i47y"; depends=[data_table GenomicRanges IRanges Rsamtools]; };
rgsepd = derive { name="rgsepd"; version="1.1.0"; sha256="1rvzlzh43j3sj2vrhmg13hl4wq3bg9hml3xq2dpx28lapynywm41"; depends=[AnnotationDbi biomaRt DESeq2 GenomicRanges goseq gplots hash]; };
rhdf5 = derive { name="rhdf5"; version="2.13.1"; sha256="01ldm91wq6klcs2djpy95m5gvspql2b35q51ba9p5017h3brvrqm"; depends=[zlibbioc]; };
rhdf5 = derive { name="rhdf5"; version="2.13.4"; sha256="0vby0cpsc22jrq37p3sxj6f3q0l238d28lx0p558mh8nks9fkai1"; depends=[zlibbioc]; };
riboSeqR = derive { name="riboSeqR"; version="1.3.0"; sha256="0jlh5q1hkxkfvy496hlbwfkl17k36n304yiyz9f0azq5kv7jz1y2"; depends=[abind GenomicRanges]; };
rnaSeqMap = derive { name="rnaSeqMap"; version="2.27.0"; sha256="1638vikgizcgg4bpfm61ak98smwy74dk5hyx73qjbisd49zvy5nk"; depends=[Biobase DBI DESeq edgeR GenomicAlignments GenomicRanges IRanges Rsamtools]; };
roar = derive { name="roar"; version="1.5.1"; sha256="1r4m95lw27rrdzfxi52llx50i3vm7k7br198k573ycmm6p941fwk"; depends=[GenomicAlignments GenomicRanges rtracklayer S4Vectors SummarizedExperiment]; };
rols = derive { name="rols"; version="1.11.2"; sha256="0mzw65knb7y41zamvnx2j3pl10b48y6xb4ajc7297dgf23v8bxms"; depends=[Biobase XML]; };
rpx = derive { name="rpx"; version="1.5.0"; sha256="1348x8jzc0bjxhyzi5yjrhx0v8jxd3x7slidjzi924aqbnn7shs0"; depends=[RCurl XML]; };
rnaseqcomp = derive { name="rnaseqcomp"; version="0.99.3"; sha256="0gyz91ayyr1834hr6jg1bnjiiiw4k75j3kn5pfmw9q8v9vg2fcsj"; depends=[RColorBrewer]; };
roar = derive { name="roar"; version="1.5.2"; sha256="0g0ylr49dvnbyb1kwj20hrh3y3x49n4rbdvg7mpdg1byrygcli3c"; depends=[GenomicAlignments GenomicRanges rtracklayer S4Vectors SummarizedExperiment]; };
rols = derive { name="rols"; version="1.11.6"; sha256="0wgzvwfq677dkqzzcq071xbh6v47vkcrzw66ch1vg348pcj58z0f"; depends=[Biobase XML]; };
rpx = derive { name="rpx"; version="1.5.1"; sha256="048qldpx4zsp55jkr8g8vljiyidm9kzv4p1vwh1983y38qbz882v"; depends=[RCurl XML]; };
rqubic = derive { name="rqubic"; version="1.15.0"; sha256="19n613m7x48wkrfrhnd0ab9018m5dd7rf08qjbgphakwycssfgcw"; depends=[biclust Biobase BiocGenerics]; };
rsbml = derive { name="rsbml"; version="2.27.0"; sha256="10qmv5gpgqffnr5wqh7zik0l2d1cg0c0m3xak4r4bqmsd1y4dw01"; depends=[BiocGenerics graph]; };
rtracklayer = derive { name="rtracklayer"; version="1.29.10"; sha256="04p3hpxf5jnyfjh5pign7r4k47pzl9m0g84cq93p8cb2jgywc97a"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl Rsamtools S4Vectors XML XVector zlibbioc]; };
rtracklayer = derive { name="rtracklayer"; version="1.29.12"; sha256="0gz3284d5cy3n0hr5w7x86lraryfi2jdg1yzj2jg6cq0hgga40c1"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl Rsamtools S4Vectors XML XVector zlibbioc]; };
sRAP = derive { name="sRAP"; version="1.9.0"; sha256="0rvnq41gns4ccr6gnfw0xbbi2c2wjl14qh0yr7wj7s4yrxzqr866"; depends=[gplots pls qvalue ROCR WriteXLS]; };
sSeq = derive { name="sSeq"; version="1.7.0"; sha256="0wcw77cz47wklwsrwwimwryqmyc0lrd9mk2aawk0vx1zkqci1yca"; depends=[caTools RColorBrewer]; };
safe = derive { name="safe"; version="3.9.0"; sha256="0x1gdzpgrm4m2m64h6y5rayp64j6ckxlr081d3w46zvfb935294a"; depends=[AnnotationDbi Biobase SparseM]; };
sagenhaft = derive { name="sagenhaft"; version="1.39.0"; sha256="1jr4pi4qz5sapigx5lwrvaw2cjbm03hpisc0kf20id8q8sg4wqqw"; depends=[SparseM]; };
sagenhaft = derive { name="sagenhaft"; version="1.39.1"; sha256="15aimbx6wn4il0jp12df1q2j7rfrifk84gk3khl6qkzwjd4k58c6"; depends=[SparseM]; };
sangerseqR = derive { name="sangerseqR"; version="1.5.0"; sha256="0wiqaqzn6n63k1389nqj35k5wn93bq7c99gayblwjrhks0y9fll0"; depends=[Biostrings shiny]; };
sapFinder = derive { name="sapFinder"; version="1.7.0"; sha256="1xg3scw5ijm1z2l4ha4ik52s97vr10plr9ifs9rdk2l6vh8na6kh"; depends=[pheatmap Rcpp rTANDEM]; };
saps = derive { name="saps"; version="2.1.0"; sha256="0r6525n8ksxaa5dcvs9419bca1v369251psvwphfsdnfa4xg2n14"; depends=[piano reshape2 survcomp survival]; };
savR = derive { name="savR"; version="1.7.3"; sha256="0jm5fc4zf4iqdq2qzzigal5r69mllzdx578ixxb9c3hxi55161mc"; depends=[ggplot2 gridExtra reshape2 scales XML]; };
savR = derive { name="savR"; version="1.7.4"; sha256="1v0rzrh27yl0fx5gcwb04yq2vln3ngisg59614qmmdppc36qf5k6"; depends=[ggplot2 gridExtra reshape2 scales XML]; };
scsR = derive { name="scsR"; version="1.5.0"; sha256="1n9clp1ldspxbrv4chihv1xhw2fmys13p884cmn037xhwv5b7j3r"; depends=[BiocGenerics Biostrings ggplot2 hash IRanges plyr RColorBrewer sqldf STRINGdb]; };
segmentSeq = derive { name="segmentSeq"; version="2.3.1"; sha256="005b9a7rhhhcpkac8xyvl9lbzgwjbfpqr49wyn0i9j99v9zw1lfv"; depends=[baySeq GenomicRanges IRanges S4Vectors ShortRead]; };
seq2pathway = derive { name="seq2pathway"; version="1.1.2"; sha256="1ghanxmfs99h8w2fxn6im3ml7brhhx131k7djbvsm695lvxgqm7a"; depends=[biomaRt GenomicRanges GSA nnet WGCNA]; };
@ -970,7 +979,7 @@ seqLogo = derive { name="seqLogo"; version="1.35.0"; sha256="1fwg6v536kqgmmjfk3c
seqPattern = derive { name="seqPattern"; version="1.1.1"; sha256="0lshbskj928c2n7gi6kf22id6rarmbby5ffrlxir0zihh7g7yfxz"; depends=[Biostrings GenomicRanges IRanges KernSmooth plotrix]; };
seqTools = derive { name="seqTools"; version="1.3.0"; sha256="17n8mz93jx7ggf6w3hm92r9mb224w2spwsyr85amny6x8xrxr7k7"; depends=[zlibbioc]; };
seqbias = derive { name="seqbias"; version="1.17.0"; sha256="02zlj9nmwhjjmbfw499pf1szpair7ahbijvf6ci30z2g805l1qsk"; depends=[Biostrings GenomicRanges Rsamtools zlibbioc]; };
seqplots = derive { name="seqplots"; version="1.5.1"; sha256="0xwhrln6bmsfv4rrnnr8mih2dvchxxv7kxdj9mwmwrnsh9ghk4qr"; depends=[Biostrings BSgenome Cairo class DBI digest DT fields GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges jsonlite kohonen plotrix reshape2 RSQLite rtracklayer S4Vectors shiny]; };
seqplots = derive { name="seqplots"; version="1.6.0"; sha256="1mxllx6v87mk2vm5za97dhyfbwxdmmg1ly39vzacavldlc7hqkgc"; depends=[Biostrings BSgenome Cairo class DBI digest DT fields GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges jsonlite kohonen plotrix reshape2 RSQLite rtracklayer S4Vectors shiny]; };
shinyMethyl = derive { name="shinyMethyl"; version="1.3.0"; sha256="03wfpaprrg6czkik0xxwq7hkwgdqm3z7frl6vpcq333chnv3nl5z"; depends=[BiocGenerics matrixStats minfi RColorBrewer shiny]; };
shinyTANDEM = derive { name="shinyTANDEM"; version="1.7.0"; sha256="18fl4kjwhbxnnhifa9kxz6j73pri0kfw08mgrryzdpqbd2p7x70y"; depends=[mixtools rTANDEM shiny xtable]; };
sigPathway = derive { name="sigPathway"; version="1.37.0"; sha256="1gkkpgibj3snpzs33c4k09b7q029s3jjch7slx7ljaqhdzldbpw4"; depends=[]; };
@ -985,8 +994,8 @@ sizepower = derive { name="sizepower"; version="1.39.0"; sha256="1xw2r7m2hlg9r5i
skewr = derive { name="skewr"; version="1.1.0"; sha256="1dd7vn4d7zffvmy1ic139qc5rp647wyw4jqlyy6kc2vil0w8368q"; depends=[IRanges methylumi minfi mixsmsn RColorBrewer wateRmelon]; };
snapCGH = derive { name="snapCGH"; version="1.39.0"; sha256="11xdijl28mn7znjdv1qgj5z5hhf7xnnpg79pnxr5kj17b06w5509"; depends=[aCGH cluster DNAcopy GLAD limma tilingArray]; };
snm = derive { name="snm"; version="1.17.0"; sha256="0ckn29nymlml8ldxqq5la1h3bwm2h2c2zcr2sjs5plxl2fga4a0l"; depends=[corpcor lme4]; };
snpStats = derive { name="snpStats"; version="1.19.0"; sha256="0m42vqjsqh2bjkn5vd5hm4q5r0pi9znxi2qzxxh0c9iai8wjjsca"; depends=[BiocGenerics Matrix survival zlibbioc]; };
soGGi = derive { name="soGGi"; version="1.1.1"; sha256="17kq195xgsfq5fxvkyfxhkx1rcx4wp0115043snmxhp0vfpp36qv"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; };
snpStats = derive { name="snpStats"; version="1.19.1"; sha256="1i4v737mrjjp8b24mihiv53ifgjcs7gaf9c4h2ling6gpasf39z8"; depends=[BiocGenerics Matrix survival zlibbioc]; };
soGGi = derive { name="soGGi"; version="1.1.2"; sha256="0vqsdlnbdimz1y2q37ycddc3ifykbr9d0hsg47kqh5wjzgsrl4h7"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; };
spade = derive { name="spade"; version="1.17.0"; sha256="02ba8ybgcldjmfsxywb0q7drm5nyhg6i72brvbrcgsq2ni0b7cpf"; depends=[Biobase flowCore igraph Rclusterpp]; };
specL = derive { name="specL"; version="1.3.3"; sha256="17067na171pn55w7znyhrn9bcibjpk7spvdw5l6gzrr5slh49qg8"; depends=[DBI protViz Rcpp RSQLite seqinr]; };
spikeLI = derive { name="spikeLI"; version="2.29.0"; sha256="1f7in8zcbdz9i1cqdhvdcjl6g71vhz9hgd8whc0x9nf12qa87l7p"; depends=[]; };
@ -1007,7 +1016,7 @@ survcomp = derive { name="survcomp"; version="1.19.0"; sha256="1czy90l49f0c31kh9
sva = derive { name="sva"; version="3.15.0"; sha256="0bskn3famgz24kjaz4lrrm94vw07g5d2103h9gh5qzhajdsc2d03"; depends=[genefilter mgcv]; };
switchBox = derive { name="switchBox"; version="1.3.0"; sha256="0bnb1wqxl3rv8w5rm0jw3x22yy8q27j11hpqnd792fvsz8ssr5h1"; depends=[]; };
synapter = derive { name="synapter"; version="1.11.0"; sha256="05gv788mx1bzizr07cg5cw98i4xm3qdh8hpys4xvr06as7q65h2g"; depends=[Biobase BiocParallel Biostrings cleaver hwriter knitr lattice MSnbase multtest qvalue RColorBrewer]; };
systemPipeR = derive { name="systemPipeR"; version="1.3.4"; sha256="16sn8svmxz9yfhhdl3kwq3hgk80rmirz2g4c8z8i9dib3i8i3sia"; depends=[annotate BatchJobs BiocGenerics Biostrings DESeq2 edgeR GenomicRanges ggplot2 GOstats limma pheatmap rjson Rsamtools ShortRead SummarizedExperiment VariantAnnotation]; };
systemPipeR = derive { name="systemPipeR"; version="1.3.11"; sha256="1ssxavb1dwfma6dvd6jp4vnh4xz1nns0d14ccrrslssnch8knn3g"; depends=[annotate BatchJobs BiocGenerics Biostrings DESeq2 edgeR GenomicRanges ggplot2 GOstats limma pheatmap rjson Rsamtools ShortRead SummarizedExperiment VariantAnnotation]; };
tRanslatome = derive { name="tRanslatome"; version="1.7.0"; sha256="1pcr1ghwkmkpsbkqh85yninvgb2za2vdsnax5bjkdj60wfj0d5bc"; depends=[anota Biobase DESeq edgeR GOSemSim gplots Heatplus limma plotrix RankProd samr sigPathway topGO]; };
ternarynet = derive { name="ternarynet"; version="1.13.0"; sha256="13pnzzlfzgkvqn323xhjvbaqzrk2fjq440ff9hjf09a53g14q7li"; depends=[igraph]; };
tigre = derive { name="tigre"; version="1.23.0"; sha256="177phidn72rcghb4mqfcr2wbfx5pz2vdw6jh7ahnki7s5q6fkldl"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; };
@ -1015,9 +1024,9 @@ tilingArray = derive { name="tilingArray"; version="1.47.0"; sha256="1l7ldbzzjxa
timecourse = derive { name="timecourse"; version="1.41.0"; sha256="1jpbjh4dg71zyhy8vghzqvmkg17aw7azdbhn101j8rdfsf90i8mx"; depends=[Biobase limma marray MASS]; };
tkWidgets = derive { name="tkWidgets"; version="1.47.0"; sha256="08vhxl7bdhnx0vk8pkm4bxjy9jvg42wy8nhlp04fyjkylfs5d58r"; depends=[DynDoc widgetTools]; };
topGO = derive { name="topGO"; version="2.21.0"; sha256="0hhglb4zqbjwqywn37h3klz7qgkypl2zmv1afibxjn70xc6wxq46"; depends=[AnnotationDbi Biobase BiocGenerics graph lattice SparseM]; };
trackViewer = derive { name="trackViewer"; version="1.5.1"; sha256="16xjh6k1v1pp29g2x2n8ywaapf7wgj2l4klmmspa3f8gkzlmxgwz"; depends=[GenomicAlignments GenomicFeatures GenomicRanges Gviz gWidgetstcltk pbapply Rsamtools rtracklayer scales]; };
trackViewer = derive { name="trackViewer"; version="1.5.2"; sha256="0kr6mkim32khr5zqm7wzrv03g9fvn4imxr0b7h8jl7sl896hv5ks"; depends=[GenomicAlignments GenomicFeatures GenomicRanges Gviz gWidgetstcltk pbapply Rsamtools rtracklayer scales]; };
tracktables = derive { name="tracktables"; version="1.3.0"; sha256="125z9b0rjvrrbg91bdzqrf3rrw0aajivpyxd1m9k1gcs6jmsaaj3"; depends=[GenomicRanges IRanges RColorBrewer Rsamtools stringr tractor_base XML XVector]; };
triform = derive { name="triform"; version="1.11.2"; sha256="11vsg3ki9dyl8vpi1q1p0cilhnvz076lk55w6ld4k53sp2h3q0r4"; depends=[BiocGenerics IRanges yaml]; };
triform = derive { name="triform"; version="1.11.3"; sha256="0j8arzd9zbd37kzz1ndr6ljzz21h7bi33p0iqzy83l5ifidd4kaj"; depends=[BiocGenerics IRanges yaml]; };
trigger = derive { name="trigger"; version="1.15.0"; sha256="1gsvp2rvry8pg9wfl9rggjfjxd0dcq3lrfkygfsl4jqcwnankpvc"; depends=[corpcor qtl qvalue sva]; };
trio = derive { name="trio"; version="3.7.1"; sha256="1g3q1pvqq2kp1vck9c7sj000inw5b7q0wvd14yr8096mm6ax8zka"; depends=[]; };
triplex = derive { name="triplex"; version="1.9.0"; sha256="0a7pyazg2vmk8229x6lvvxcvplj07drqrlvn9cra5ckqhflm3san"; depends=[Biostrings GenomicRanges IRanges S4Vectors XVector]; };
@ -1027,7 +1036,7 @@ twilight = derive { name="twilight"; version="1.45.0"; sha256="0dzgapk34jzxhdadr
unifiedWMWqPCR = derive { name="unifiedWMWqPCR"; version="1.5.0"; sha256="055yvgwqjh91cf8d2hsacnbzq2z9c911cy3qd206azqlr6qyjiip"; depends=[BiocGenerics HTqPCR]; };
vbmp = derive { name="vbmp"; version="1.37.0"; sha256="1i4akvqrwj1r0ahi4vjxl7q780sa5bryj3rd2c5wg0ifd5l95h6s"; depends=[]; };
viper = derive { name="viper"; version="1.5.1"; sha256="0494601adg93i5gwam73x4x3m7vfg25xly6v2gj4aclaq9v6fpyf"; depends=[Biobase e1071 KernSmooth mixtools]; };
vsn = derive { name="vsn"; version="3.37.1"; sha256="0qya4csz1vhvshnzrml6d9fbxqrdp2ckh4f38izcbj53y3hhilf9"; depends=[affy Biobase lattice limma]; };
vsn = derive { name="vsn"; version="3.37.3"; sha256="09mzv7l5j20sx14m63q9ycpacrh2zayywiyckglfgndpc8v9wp08"; depends=[affy Biobase ggplot2 hexbin lattice limma]; };
vtpnet = derive { name="vtpnet"; version="0.9.0"; sha256="0gbs4pdwy88pjwsn3r2yspnfscz127awhlwym6g1lk8sxkb4mjxc"; depends=[doParallel foreach GenomicRanges graph gwascat]; };
wateRmelon = derive { name="wateRmelon"; version="1.9.0"; sha256="1lgadzv28j5qqqqsrjzakxmyj1q9j0hps3waa2nn9r7dq4cvallh"; depends=[limma lumi matrixStats methylumi ROC]; };
wavClusteR = derive { name="wavClusteR"; version="2.3.1"; sha256="0cfh1jiyzs1fijp8p3f4vysvrm7xhrriqdyjrms81pldka4kfv6y"; depends=[Biostrings foreach GenomicFeatures GenomicRanges ggplot2 Hmisc IRanges mclust Rsamtools rtracklayer seqinr stringr wmtsa]; };

1065
pkgs/development/r-modules/cran-packages.nix
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File diff suppressed because it is too large Load diff

3
pkgs/development/r-modules/default.nix
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@ -417,7 +417,6 @@ let
"BEQI2"
"betapart"
"betaper"
"BHMSMAfMRI"
"BiodiversityR"
"BioGeoBEARS"
"bio_infer"
@ -607,7 +606,6 @@ let
"rgl"
"RHRV"
"rich"
"ringscale"
"rioja"
"ripa"
"rite"
@ -1155,7 +1153,6 @@ let
"immunoClust" # build is broken
"imputeR" # depends on broken package nlopt-2.4.2
"in2extRemes" # depends on broken package nlopt-2.4.2
"incReg" # depends on broken package nlopt-2.4.2
"inferference" # depends on broken package nlopt-2.4.2
"influence_ME" # depends on broken package nlopt-2.4.2
"inSilicoMerging" # build is broken