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snakemake: 5.4.4 -> 5.7.4 (#72929)

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(#72929)
This commit is contained in:
Dmitry Kalinkin 2019-11-12 18:46:56 -05:00 committed by Renaud
parent 6e4a22449d
commit 93ee8095b0
2 changed files with 8 additions and 10 deletions
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16
pkgs/applications/science/misc/snakemake/default.nix
View file

@ -1,28 +1,26 @@
{
stdenv
, python
}:
{ stdenv, python3Packages }:
python.buildPythonPackage rec {
python3Packages.buildPythonApplication rec {
pname = "snakemake";
version = "5.4.4";
version = "5.7.4";
propagatedBuildInputs = with python; [
propagatedBuildInputs = with python3Packages; [
appdirs
ConfigArgParse
datrie
docutils
GitPython
jsonschema
psutil
pyyaml
ratelimiter
requests
wrapt
];
src = python.fetchPypi {
src = python3Packages.fetchPypi {
inherit pname version;
sha256 = "157323e0e1be34302edbbf399b2acbe25a4291bceffd47a0469963a970c9375f";
sha256 = "11f2f00c505d928b91332056667d49c96ed1694bf78e798ce27613948d44a2a2";
};
doCheck = false; # Tests depend on Google Cloud credentials at ${HOME}/gcloud-service-key.json

2
pkgs/top-level/all-packages.nix
View file

@ -10339,7 +10339,7 @@ in
smc = callPackage ../tools/misc/smc { };
snakemake = callPackage ../applications/science/misc/snakemake { python = python3Packages; };
snakemake = callPackage ../applications/science/misc/snakemake { };
snore = callPackage ../tools/misc/snore { };