forked from mirrors/nixpkgs
python3Packages.pyvcf: remove
This library was introduced as a dependency of "truvari" but is no longer used. Also, it can no longer be built due to the removal of "use_2to3".
This commit is contained in:
parent
5e97a10756
commit
8e5964963f
|
@ -1,33 +0,0 @@
|
|||
{ lib
|
||||
, buildPythonPackage
|
||||
, fetchFromGitHub
|
||||
, pytest
|
||||
}:
|
||||
|
||||
buildPythonPackage rec {
|
||||
pname = "PyVCF";
|
||||
version = "0.6.8";
|
||||
|
||||
src = fetchFromGitHub {
|
||||
owner = "jamescasbon";
|
||||
repo = "PyVCF";
|
||||
rev = "476169cd457ba0caa6b998b301a4d91e975251d9";
|
||||
sha256 = "0qf9lwj7r2hjjp4bd4vc7nayrhblfm4qcqs4dbd43a6p4bj2jv5p";
|
||||
};
|
||||
|
||||
nativeCheckInputs = [ pytest ];
|
||||
|
||||
meta = with lib; {
|
||||
homepage = "https://pyvcf.readthedocs.io/en/latest/index.html";
|
||||
description = "A VCF (Variant Call Format) Parser for Python, supporting version 4.0 and 4.1";
|
||||
license = licenses.bsd3;
|
||||
maintainers = with maintainers; [ scalavision ];
|
||||
longDescription = ''
|
||||
The intent of this module is to mimic the csv module in the Python stdlib,
|
||||
as opposed to more flexible serialization formats like JSON or YAML.
|
||||
vcf will attempt to parse the content of each record based on the data
|
||||
types specified in the meta-information lines
|
||||
'';
|
||||
broken = true; # uses the 2to3 feature, that got removed in setuptools 0.58
|
||||
};
|
||||
}
|
|
@ -251,6 +251,7 @@ mapAliases ({
|
|||
pytorchWithCuda = torchWithCuda; # added 2022-09-30
|
||||
pytorchWithoutCuda = torchWithoutCuda; # added 2022-09-30
|
||||
pytwitchapi = twitchapi; # added 2022-03-07
|
||||
pyvcf = throw "pyvcf has been removed, it was using setuptools 2to3 translation feature, which has been removed in setuptools 58"; # added 2023-05-19
|
||||
PyVirtualDisplay = pyvirtualdisplay; # added 2023-02-19
|
||||
qasm2image = throw "qasm2image is no longer maintained (since November 2018), and is not compatible with the latest pythonPackages.qiskit versions."; # added 2020-12-09
|
||||
Quandl = quandl; # added 2023-02-19
|
||||
|
|
|
@ -10043,8 +10043,6 @@ self: super: with self; {
|
|||
|
||||
pyvcd = callPackage ../development/python-modules/pyvcd { };
|
||||
|
||||
pyvcf = callPackage ../development/python-modules/pyvcf { };
|
||||
|
||||
pyvera = callPackage ../development/python-modules/pyvera { };
|
||||
|
||||
pyverilog = callPackage ../development/python-modules/pyverilog { };
|
||||
|
|
Loading…
Reference in a new issue