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python3Packages.pyvcf: remove

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This library was introduced as a dependency of "truvari" but is no
longer used.
Also, it can no longer be built due to the removal of "use_2to3".
This commit is contained in:
natsukium 2023-05-19 20:02:38 +09:00
parent 5e97a10756
commit 8e5964963f
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GPG key ID: 9EA45A31DB994C53
3 changed files with 1 additions and 35 deletions
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33
pkgs/development/python-modules/pyvcf/default.nix
View file

@ -1,33 +0,0 @@
{ lib
, buildPythonPackage
, fetchFromGitHub
, pytest
}:
buildPythonPackage rec {
pname = "PyVCF";
version = "0.6.8";
src = fetchFromGitHub {
owner = "jamescasbon";
repo = "PyVCF";
rev = "476169cd457ba0caa6b998b301a4d91e975251d9";
sha256 = "0qf9lwj7r2hjjp4bd4vc7nayrhblfm4qcqs4dbd43a6p4bj2jv5p";
};
nativeCheckInputs = [ pytest ];
meta = with lib; {
homepage = "https://pyvcf.readthedocs.io/en/latest/index.html";
description = "A VCF (Variant Call Format) Parser for Python, supporting version 4.0 and 4.1";
license = licenses.bsd3;
maintainers = with maintainers; [ scalavision ];
longDescription = ''
The intent of this module is to mimic the csv module in the Python stdlib,
as opposed to more flexible serialization formats like JSON or YAML.
vcf will attempt to parse the content of each record based on the data
types specified in the meta-information lines
'';
broken = true; # uses the 2to3 feature, that got removed in setuptools 0.58
};
}

1
pkgs/top-level/python-aliases.nix
View file

@ -251,6 +251,7 @@ mapAliases ({
pytorchWithCuda = torchWithCuda; # added 2022-09-30
pytorchWithoutCuda = torchWithoutCuda; # added 2022-09-30
pytwitchapi = twitchapi; # added 2022-03-07
pyvcf = throw "pyvcf has been removed, it was using setuptools 2to3 translation feature, which has been removed in setuptools 58"; # added 2023-05-19
PyVirtualDisplay = pyvirtualdisplay; # added 2023-02-19
qasm2image = throw "qasm2image is no longer maintained (since November 2018), and is not compatible with the latest pythonPackages.qiskit versions."; # added 2020-12-09
Quandl = quandl; # added 2023-02-19

2
pkgs/top-level/python-packages.nix
View file

@ -10043,8 +10043,6 @@ self: super: with self; {
pyvcd = callPackage ../development/python-modules/pyvcd { };
pyvcf = callPackage ../development/python-modules/pyvcf { };
pyvera = callPackage ../development/python-modules/pyvera { };
pyverilog = callPackage ../development/python-modules/pyverilog { };