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star: init at 2.5.3a

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Arcadio Rubio García 2018-01-22 18:27:50 +00:00
parent 1d47908879
commit 72d675b23c
3 changed files with 37 additions and 0 deletions
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1
lib/maintainers.nix
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@ -55,6 +55,7 @@
antonxy = "Anton Schirg <anton.schirg@posteo.de>";
apeschar = "Albert Peschar <albert@peschar.net>";
apeyroux = "Alexandre Peyroux <alex@px.io>";
arcadio = "Arcadio Rubio García <arc@well.ox.ac.uk>";
ardumont = "Antoine R. Dumont <eniotna.t@gmail.com>";
aristid = "Aristid Breitkreuz <aristidb@gmail.com>";
arobyn = "Alexei Robyn <shados@shados.net>";

34
pkgs/applications/science/biology/star/default.nix Normal file
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@ -0,0 +1,34 @@
{ stdenv, fetchFromGitHub, zlib }:
stdenv.mkDerivation rec {
name = "star-${version}";
version = "2.5.3a";
src = fetchFromGitHub {
repo = "STAR";
owner = "alexdobin";
rev = version;
sha256 = "1fd9xl7i1zxgsxn2qf6gz8s42g2djm29qmp6qb35d8nnxh8ns54x";
};
sourceRoot = "source/source";
postPatch = "sed 's:/bin/rm:rm:g' -i Makefile";
buildInputs = [ zlib ];
buildPhase = "make STAR STARlong";
installPhase = ''
mkdir -p $out/bin
cp STAR STARlong $out/bin
'';
meta = with stdenv.lib; {
description = "Spliced Transcripts Alignment to a Reference";
homepage = https://github.com/alexdobin/STAR;
license = licenses.gpl3Plus;
platforms = platforms.linux;
maintainers = [ maintainers.arcadio ];
};
}

2
pkgs/top-level/all-packages.nix
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@ -18962,6 +18962,8 @@ with pkgs;
snpeff = callPackage ../applications/science/biology/snpeff/default.nix { };
star = callPackage ../applications/science/biology/star { };
varscan = callPackage ../applications/science/biology/varscan/default.nix { };
bwa = callPackage ../applications/science/biology/bwa/default.nix { };