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python.pkgs.nibabel: fix build and run tests

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Robert Schütz 2019-01-17 20:25:35 +01:00 committed by Frederik Rietdijk
parent 567cbef598
commit 2fee113398
1 changed files with 20 additions and 10 deletions
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30
pkgs/development/python-modules/nibabel/default.nix
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@ -1,9 +1,12 @@
{ stdenv
{ lib
, buildPythonPackage
, fetchPypi
, isPy3k
, numpy
, nose
, six
, bz2file
, nose
, mock
}:
buildPythonPackage rec {
@ -17,17 +20,24 @@ buildPythonPackage rec {
propagatedBuildInputs = [
numpy
nose
six
];
] ++ lib.optional (!isPy3k) bz2file;
# Failing tests
# nibabel.tests.test_minc1.test_old_namespace
# nibabel.gifti.tests.test_parse_gifti_fast.test_parse_dataarrays
# nibabel.gifti.tests.test_giftiio.test_read_deprecated
doCheck = false;
checkInputs = [ nose mock ];
meta = with stdenv.lib; {
checkPhase = let
excludeTests = lib.optionals isPy3k [
# https://github.com/nipy/nibabel/issues/691
"nibabel.gifti.tests.test_giftiio.test_read_deprecated"
"nibabel.gifti.tests.test_parse_gifti_fast.test_parse_dataarrays"
"nibabel.tests.test_minc1.test_old_namespace"
];
# TODO: Add --with-doctest once all doctests pass
in ''
nosetests ${lib.concatMapStrings (test: "-e '${test}' ") excludeTests}
'';
meta = with lib; {
homepage = http://nipy.org/nibabel/;
description = "Access a multitude of neuroimaging data formats";
license = licenses.mit;