Merge pull request #127601 from tfmoraes/python3Package-dask-2021.06.1

pkgs/development/python-modules/dask/default.nix

@@ -2,7 +2,6 @@
 , stdenv
 , bokeh
 , buildPythonPackage
-, fetchpatch
 , fetchFromGitHub
 , fsspec
 , pytestCheckHook
@@ -21,14 +20,14 @@
 
 buildPythonPackage rec {
   pname = "dask";
-  version = "2021.03.0";
+  version = "2021.06.1";
   disabled = pythonOlder "3.5";
 
   src = fetchFromGitHub {
     owner = "dask";
     repo = pname;
     rev = version;
-    sha256 = "LACv7lWpQULQknNGX/9vH9ckLsypbqKDGnsNBgKT1eI=";
+    sha256 = "sha256-wrUqLSmlKhd0NSjWBwbow8aX53ZBTgl2n4lEmvxC3bs=";
   };
 
   propagatedBuildInputs = [
@@ -54,16 +53,6 @@ buildPythonPackage rec {
 
   dontUseSetuptoolsCheck = true;
 
-  patches = [
-    # dask dataframe cannot be imported in sandboxed builds
-    # See https://github.com/dask/dask/pull/7601
-    (fetchpatch {
-      url = "https://github.com/dask/dask/commit/9ce5b0d258cecb3ef38fd844135ad1f7ac3cea5f.patch";
-      sha256 = "sha256-1EVRYwAdTSEEH9jp+UOnrijzezZN3iYR6q6ieYJM3kY=";
-      name = "fix-dask-dataframe-imports-in-sandbox.patch";
-    })
-  ];
-
   postPatch = ''
     # versioneer hack to set version of github package
     echo "def get_versions(): return {'dirty': False, 'error': None, 'full-revisionid': None, 'version': '${version}'}" > dask/_version.py
@@ -82,6 +71,12 @@ buildPythonPackage rec {
     # this test requires features of python3Packages.psutil that are
     # blocked in sandboxed-builds
     "test_auto_blocksize_csv"
+  ] ++ [
+    # A deprecation warning from newer sqlalchemy versions makes these tests
+    # to fail https://github.com/dask/dask/issues/7406
+    "test_sql"
+    # Test interrupt fails intermittently https://github.com/dask/dask/issues/2192
+    "test_interrupt"
   ];
 
   __darwinAllowLocalNetworking = true;

pkgs/development/python-modules/datashader/default.nix

@@ -24,11 +24,11 @@
 
 buildPythonPackage rec {
   pname = "datashader";
-  version = "0.12.1";
+  version = "0.13.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "a135612876dc3e4b16ccb9ddb70de50519825c8c1be251b49aefa550bcf8a39a";
+    sha256 = "sha256-6JscHm1QjDmXOLLa83qhAvY/xwvlPM6duQ1lSxnCVV8=";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/distributed/default.nix

@@ -20,13 +20,13 @@
 
 buildPythonPackage rec {
   pname = "distributed";
-  version = "2021.3.0";
+  version = "2021.6.1";
   disabled = pythonOlder "3.6";
 
   # get full repository need conftest.py to run tests
   src = fetchPypi {
     inherit pname version;
-    sha256 = "sha256-Qn/n4Ee7rXQTxl1X5W+k1rHPkh/SBqPSyquUv5FTw9s=";
+    sha256 = "sha256-Z79h/WAio5diX2myChx8HPAWe2RB4Ajw7Ybch4XUYFc=";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/intake/default.nix

@@ -73,6 +73,7 @@ buildPythonPackage rec {
 
     # broken test
     "test_read_pattern"
+    "test_remote_arr"
   ];
 
   meta = with lib; {

pkgs/development/python-modules/streamz/default.nix

@@ -1,4 +1,7 @@
-{ lib, buildPythonPackage, fetchPypi
+{ lib
+, buildPythonPackage
+, fetchPypi
+, fetchpatch
 , confluent-kafka
 , distributed
 , flaky
@@ -22,6 +25,14 @@ buildPythonPackage rec {
     sha256 = "04446ece273c041506b1642bd3d8380367a8372196be4d6d6d03faafadc590b2";
   };
 
+  patches = [
+    # Fix apply import from dask
+    (fetchpatch {
+      url = "https://patch-diff.githubusercontent.com/raw/python-streamz/streamz/pull/423.patch";
+      sha256 = "sha256-CR+uRvzaFu9WQ633tbvX3gAnudhlVN6VvmxKiR37diw=";
+    })
+  ];
+
   propagatedBuildInputs = [
     networkx
     tornado
@@ -46,6 +57,7 @@ buildPythonPackage rec {
   checkPhase = ''
     pytest --deselect=streamz/tests/test_sources.py::test_tcp_async \
       --deselect=streamz/tests/test_sources.py::test_tcp \
+      --deselect=streamz/tests/test_core.py::test_partition_timeout \
       --ignore=streamz/tests/test_kafka.py
   '';
 

pkgs/development/python-modules/sunpy/default.nix

@@ -31,12 +31,12 @@
 
 buildPythonPackage rec {
   pname = "sunpy";
-  version = "2.1.2";
+  version = "3.0.0";
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "8bbc440e606a4f3fcbd1441150d81da6f0208adace9dc06f6afd2c9cb7c08908";
+    sha256 = "sha256-N/DAvnO+S9E4tndEWpiG84P3FCFwxYNdGFxbxUVsTx8=";
   };
 
   nativeBuildInputs = [
@@ -74,9 +74,12 @@ buildPythonPackage rec {
 
   # darwin has write permission issues
   doCheck = stdenv.isLinux;
+
   # ignore documentation tests
   checkPhase = ''
-    PY_IGNORE_IMPORTMISMATCH=1 HOME=$(mktemp -d) pytest sunpy -k 'not rst'
+    PY_IGNORE_IMPORTMISMATCH=1 HOME=$(mktemp -d) pytest sunpy -k 'not rst' \
+    --deselect=sunpy/tests/tests/test_self_test.py::test_main_nonexisting_module \
+    --deselect=sunpy/tests/tests/test_self_test.py::test_main_stdlib_module
   '';
 
   meta = with lib; {