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Merge pull request #127829 from veprbl/pr/snakemake_6_5_0

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Sandro 2021-06-24 22:46:26 +02:00 committed by GitHub
parent 6af4651562 e3678ae8a6
commit 1c8bc6c2f1
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4 changed files with 62 additions and 2 deletions
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7
pkgs/applications/science/misc/snakemake/default.nix
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@ -2,11 +2,12 @@
python3Packages.buildPythonApplication rec {
pname = "snakemake";
version = "6.0.5";
version = "6.5.0";
propagatedBuildInputs = with python3Packages; [
appdirs
ConfigArgParse
connection-pool
datrie
docutils
filelock
@ -19,13 +20,15 @@ python3Packages.buildPythonApplication rec {
ratelimiter
requests
smart-open
stopit
tabulate
toposort
wrapt
];
src = python3Packages.fetchPypi {
inherit pname version;
sha256 = "9441169034cce46086a8b45486d75175db645b932e766d28fed312ec837792d3";
sha256 = "b166ec74537e02553fcaf0ddcffc32dfdb9dcaa1260af297a56eded6a179b2ee";
};
doCheck = false; # Tests depend on Google Cloud credentials at ${HOME}/gcloud-service-key.json

27
pkgs/development/python-modules/connection-pool/default.nix Normal file
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@ -0,0 +1,27 @@
{ lib
, buildPythonPackage
, fetchPypi
, isPy3k
}:
buildPythonPackage rec {
pname = "connection-pool";
version = "0.0.3";
disabled = !isPy3k;
src = fetchPypi {
pname = "connection_pool";
inherit version;
sha256 = "bf429e7aef65921c69b4ed48f3d48d3eac1383b05d2df91884705842d974d0dc";
};
doCheck = false; # no tests
pythonImportsCheck = [ "connection_pool" ];
meta = with lib; {
description = "Thread-safe connection pool";
homepage = "https://github.com/zhouyl/ConnectionPool";
license = with licenses; [ mit ];
maintainers = with maintainers; [ veprbl ];
};
}

26
pkgs/development/python-modules/stopit/default.nix Normal file
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@ -0,0 +1,26 @@
{ lib
, buildPythonPackage
, fetchFromGitHub
}:
buildPythonPackage rec {
pname = "stopit";
version = "1.1.2";
# tests are missing from the PyPi tarball
src = fetchFromGitHub {
owner = "glenfant";
repo = pname;
rev = version;
sha256 = "sha256-uXJUA70JOGWT2NmS6S7fPrTWAJZ0mZ/hICahIUzjfbw=";
};
pythonImportsCheck = [ "stopit" ];
meta = with lib; {
description = "Raise asynchronous exceptions in other thread, control the timeout of blocks or callables with a context manager or a decorator";
homepage = "https://github.com/glenfant/stopit";
license = with licenses; [ mit ];
maintainers = with maintainers; [ veprbl ];
};
}

4
pkgs/top-level/python-packages.nix
View file

@ -1335,6 +1335,8 @@ in {
connect-box = callPackage ../development/python-modules/connect_box { };
connection-pool = callPackage ../development/python-modules/connection-pool { };
coqpit = callPackage ../development/python-modules/coqpit { };
cerberus = callPackage ../development/python-modules/cerberus { };
@ -8226,6 +8228,8 @@ in {
stone = callPackage ../development/python-modules/stone { };
stopit = callPackage ../development/python-modules/stopit { };
strategies = callPackage ../development/python-modules/strategies { };
stravalib = callPackage ../development/python-modules/stravalib { };