From 17d2ff414d83095361c2070f1cdaf57c016af9c7 Mon Sep 17 00:00:00 2001
From: Yuri Aisaka <yuriaisaka@users.noreply.github.com>
Date: Fri, 5 May 2017 15:00:38 +0900
Subject: [PATCH] imagej: init at 150 (#25249)
* imagej: init at 150
* correcting for PR comments
---
lib/maintainers.nix | 1 +
pkgs/applications/graphics/imagej/default.nix | 48 +++++++++++++++++++
pkgs/top-level/all-packages.nix | 2 +
3 files changed, 51 insertions(+)
create mode 100644 pkgs/applications/graphics/imagej/default.nix
diff --git a/lib/maintainers.nix b/lib/maintainers.nix
index aca69cc85f2f..a477fb46b86a 100644
--- a/lib/maintainers.nix
+++ b/lib/maintainers.nix
@@ -575,6 +575,7 @@
yarr = "Dmitry V. <savraz@gmail.com>";
yochai = "Yochai <yochai@titat.info>";
yorickvp = "Yorick van Pelt <yorickvanpelt@gmail.com>";
+ yuriaisaka = "Yuri Aisaka <yuri.aisaka+nix@gmail.com>";
yurrriq = "Eric Bailey <eric@ericb.me>";
z77z = "Marco Maggesi <maggesi@math.unifi.it>";
zagy = "Christian Zagrodnick <cz@flyingcircus.io>";
diff --git a/pkgs/applications/graphics/imagej/default.nix b/pkgs/applications/graphics/imagej/default.nix
new file mode 100644
index 000000000000..673361c734e1
--- /dev/null
+++ b/pkgs/applications/graphics/imagej/default.nix
@@ -0,0 +1,48 @@
+{ stdenv, fetchurl, jre, unzip, makeWrapper }:
+
+# Note:
+# - User config dir is hard coded by upstream to $HOME/.imagej on linux systems
+# and to $HOME/Library/Preferences on macOS.
+# (The current trend appears to be to use $HOME/.config/imagej
+# on linux systems, but we here do not attempt to fix it.)
+
+let
+ imagej150 = stdenv.mkDerivation rec {
+ name = "imagej-${version}";
+ version = "150";
+
+ src = fetchurl {
+ url = "http://wsr.imagej.net/distros/cross-platform/ij150.zip";
+ sha256 = "97aba6fc5eb908f5160243aebcdc4965726693cb1353d9c0d71b8f5dd832cb7b";
+ };
+ buildInputs = [ unzip makeWrapper ];
+ inherit jre;
+
+ # JAR files that are intended to be used by other packages
+ # should go to $out/share/java.
+ # (Some uses ij.jar as a library not as a standalone program.)
+ installPhase = ''
+ mkdir -p $out/share/java
+ # Read permisssion suffices for the jar and others.
+ # Simple cp shall clear suid bits, if any.
+ cp ij.jar $out/share/java
+ cp -dR luts macros plugins $out/share
+ mkdir $out/bin
+ makeWrapper ${jre}/bin/java $out/bin/imagej \
+ --add-flags "-jar $out/share/java/ij.jar -ijpath $out/share"
+ '';
+ meta = with stdenv.lib; {
+ homepage = https://imagej.nih.gov/ij/;
+ description = "Image processing and analysis in Java";
+ longDescription = ''
+ ImageJ is a public domain Java image processing program
+ inspired by NIH Image for the Macintosh.
+ It runs on any computer with a Java 1.4 or later virtual machine.
+ '';
+ license = licenses.publicDomain;
+ platforms = with platforms; linux ++ darwin;
+ maintainers = with maintainers; [ yuriaisaka ];
+ };
+ };
+in
+ imagej150
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 5b5af2587d26..de8d9fd05cba 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -14284,6 +14284,8 @@ with pkgs;
inherit (perlPackages.override { pkgs = pkgs // { imagemagick = imagemagickBig;}; }) PerlMagick;
};
+ imagej = callPackage ../applications/graphics/imagej { };
+
imagemagick_light = imagemagick.override {
bzip2 = null;
zlib = null;