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Merge pull request #5727 from michelk/rPackages

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rPackages: overall update
This commit is contained in:
Peter Simons 2015-01-22 11:38:38 +01:00
parent 100c6e85ad 4a3be6c787
commit 0e214778de
2 changed files with 994 additions and 910 deletions
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1870
pkgs/development/r-modules/cran-packages.nix
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34
pkgs/development/r-modules/default.nix
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@ -221,7 +221,7 @@ let
libamtrack = [ pkgs.gsl ];
mixcat = [ pkgs.gsl ];
outbreaker = [ pkgs.gsl ];
pcaPA = [ pkgs.gsl ];
#pcaPA = [ pkgs.gsl ];
ridge = [ pkgs.gsl ];
simplexreg = [ pkgs.gsl ];
stsm = [ pkgs.gsl ];
@ -283,10 +283,10 @@ let
PopGenome = [ pkgs.zlib ];
RJaCGH = [ pkgs.zlib ];
RcppCNPy = [ pkgs.zlib ];
Rniftilib = [ pkgs.zlib ];
WhopGenome = [ pkgs.zlib ];
devEMF = [ pkgs.zlib ];
gdsfmt = [ pkgs.zlib ];
#Rniftilib = [ pkgs.zlib ];
#WhopGenome = [ pkgs.zlib ];
#devEMF = [ pkgs.zlib ];
#gdsfmt = [ pkgs.zlib ];
rbamtools = [ pkgs.zlib ];
rmatio = [ pkgs.zlib ];
RVowpalWabbit = [ pkgs.zlib pkgs.boost ];
@ -311,7 +311,7 @@ let
gmatrix = [ pkgs.cudatoolkit ];
WideLM = [ pkgs.cudatoolkit ];
RCurl = [ pkgs.curl ];
Rgnuplot = [ pkgs.gnuplot ];
#Rgnuplot = [ pkgs.gnuplot ];
R2SWF = [ pkgs.pkgconfig ];
RGtk2 = [ pkgs.pkgconfig ];
RProtoBuf = [ pkgs.pkgconfig ];
@ -393,7 +393,7 @@ let
"LS2Wstat"
"MAR1"
"MTurkR"
"MVPARTwrap"
#"MVPARTwrap"
"MareyMap"
"MergeGUI"
"Meth27QC"
@ -405,8 +405,8 @@ let
"PBSadmb"
"PBSmodelling"
"PCPS"
"PKmodelFinder"
"PoMoS"
#"PKmodelFinder"
#"PoMoS"
"PopGenReport"
"PredictABEL"
"PrevMap"
@ -432,7 +432,7 @@ let
"RcmdrPlugin_KMggplot2"
"RcmdrPlugin_MA"
"RcmdrPlugin_MPAStats"
"RcmdrPlugin_NMBU"
#"RcmdrPlugin_NMBU"
"RcmdrPlugin_ROC"
"RcmdrPlugin_SCDA"
"RcmdrPlugin_SLC"
@ -474,7 +474,7 @@ let
"TestScorer"
"VIMGUI"
"VecStatGraphs3D"
"VisuClust"
#"VisuClust"
"WMCapacity"
"accrual"
"ade4TkGUI"
@ -644,7 +644,7 @@ let
"rmongodb" # jsonlite.so: undefined symbol: XXX
"rnoaa" # jsonlite.so: undefined symbol: XXX
"RSiteCatalyst" # jsonlite.so: undefined symbol: XXX
"RSocrata" # jsonlite.so: undefined symbol: XXX
#"RSocrata" # jsonlite.so: undefined symbol: XXX
"rsunlight" # jsonlite.so: undefined symbol: XXX
"rWBclimate" # jsonlite.so: undefined symbol: XXX
"SGP" # jsonlite.so: undefined symbol: XXX
@ -722,7 +722,7 @@ let
"gRapHD" # requires graph
"msSurv" # requires graph
"PairViz" # requires graph
"ddepn" # requires graph, and genefilter
#"ddepn" # requires graph, and genefilter
"iRefR" # requires graph, and RBGL
"pcalg" # requires graph, and RBGL
"protiq" # requires graph, and RBGL
@ -765,7 +765,7 @@ let
"metaMA" # requires limma
"plmDE" # requires limma
"SQDA" # requires limma
"RPPanalyzer" # requires limma, and Biobase
#"RPPanalyzer" # requires limma, and Biobase
"PerfMeas" # requires limma, graph, and RBGL
"rLindo" # requires LINDO API
"magma" # requires MAGMA
@ -802,7 +802,7 @@ let
"crmn" # requires pcaMethods, and Biobase
"imputeLCMD" # requires pcaMethods, and impute
"MEET" # requires pcaMethods, and seqLogo
"SigTree" # requires phyloseq
#"SigTree" # requires phyloseq
"saps" # requires piano, and survcomp
"smart" # requires PMA
"surveillance" # requires polyCub
@ -823,7 +823,7 @@ let
"PKgraph" # requires rggobi
"SeqGrapheR" # requires rggobi
"branchLars" # requires Rgraphviz
"gcExplorer" # requires Rgraphviz
#"gcExplorer" # requires Rgraphviz
"hasseDiagram" # requires Rgraphviz
"hpoPlot" # requires Rgraphviz
"strum" # requires Rgraphviz
@ -891,7 +891,7 @@ let
"rsig" # requires survcomp
"leapp" # requires sva
"ttScreening" # requires sva, and limma
"ENA" # requires WGCNA
#"ENA" # requires WGCNA
"GOGANPA" # requires WGCNA
"nettools" # requires WGCNA
"rneos" # requires XMLRPC