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nixpkgs/pkgs/applications/science/math/sage/default.nix

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sage: 6.8 -> 8.0 This "un-breaks" sage while also updating it to 8.0. It compiles sage with its dependencies as one big pile, which is not the best approach but definately better than nothing for now. To be able to shrink the huge output pile a little, it also splits docs from the rest of the output.
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# TODO
# - consider writing a script to convert spkgs to nix packages, similar to vim
# or cabal2nix. This would allow a more efficient and "cleaner" build, greater
# flexibility and the possibility to select which dependencies to add and which
# to remove. It would also allow to use system packages for some dependencies
# and recompile others (optimized for the system) without recompiling everything.
# - add optdeps:
# - imagemagick
# - texlive full for documentation
# - ...
# - further seperate build outputs. Also maybe run `make doc`.
# Configure flags like --bindir and --libdir oculd also be used for that, see
# ./configure --help`.
# Other resources:
# - https://wiki.debian.org/DebianScience/Sage
# - https://github.com/cschwan/sage-on-gentoo
# - https://git.archlinux.org/svntogit/community.git/tree/trunk?h=packages/sagemath
{ stdenv
sage: 8.0 -> 8.1, fix sandbox build The sandboxed build was failing, because it relied heavily on /usr/bin/env. This is fixed with a lot of shebang patching (both to system packages and to sage-internal packages).
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, bash
sage: 6.8 -> 8.0 This "un-breaks" sage while also updating it to 8.0. It compiles sage with its dependencies as one big pile, which is not the best approach but definately better than nothing for now. To be able to shrink the huge output pile a little, it also splits docs from the rest of the output.
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, fetchurl
, perl
, gfortran
, python
, autoreconfHook
, gettext
sage: 6.1.1 -> 6.8
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, which
sage: 6.8 -> 8.0 This "un-breaks" sage while also updating it to 8.0. It compiles sage with its dependencies as one big pile, which is not the best approach but definately better than nothing for now. To be able to shrink the huge output pile a little, it also splits docs from the rest of the output.
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, texlive
sage: 8.0 -> 8.1, fix sandbox build The sandboxed build was failing, because it relied heavily on /usr/bin/env. This is fixed with a lot of shebang patching (both to system packages and to sage-internal packages).
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, texinfo
sage: 6.8 -> 8.0 This "un-breaks" sage while also updating it to 8.0. It compiles sage with its dependencies as one big pile, which is not the best approach but definately better than nothing for now. To be able to shrink the huge output pile a little, it also splits docs from the rest of the output.
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, hevea
Add expression for sage
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}:
stdenv.mkDerivation rec {
sage: 8.0 -> 8.1, fix sandbox build The sandboxed build was failing, because it relied heavily on /usr/bin/env. This is fixed with a lot of shebang patching (both to system packages and to sage-internal packages).
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version = "8.1";
sage: 6.8 -> 8.0 This "un-breaks" sage while also updating it to 8.0. It compiles sage with its dependencies as one big pile, which is not the best approach but definately better than nothing for now. To be able to shrink the huge output pile a little, it also splits docs from the rest of the output.
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name = "sage-${version}";
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sage: 8.0 -> 8.1, fix sandbox build The sandboxed build was failing, because it relied heavily on /usr/bin/env. This is fixed with a lot of shebang patching (both to system packages and to sage-internal packages).
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# Modified version of patchShebangs that patches to the sage-internal version if possible
# and falls back to the system version if not.
patchSageShebangs = ./patchSageShebangs.sh;
Add expression for sage
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src = fetchurl {
sage: 6.8 -> 8.0 This "un-breaks" sage while also updating it to 8.0. It compiles sage with its dependencies as one big pile, which is not the best approach but definately better than nothing for now. To be able to shrink the huge output pile a little, it also splits docs from the rest of the output.
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# Note that the source is *not* fetched from github, since that doesn't
# the upstream folder with all the source tarballs of the spkgs.
# If those are not present they are fetched at build time, which breaks
# when building in a sandbox (and probably only works if you install the
# latest sage version).
urls = [
"http://mirrors.mit.edu/sage/src/sage-${version}.tar.gz"
"ftp://ftp.fu-berlin.de/unix/misc/sage/src/sage-${version}.tar.gz"
"http://sagemath.polytechnic.edu.na/src/sage-${version}.tar.gz"
"ftp://ftp.sun.ac.za/pub/mirrors/www.sagemath.org/src/sage-${version}.tar.gz"
"http://sagemath.mirror.ac.za/src/sage-${version}.tar.gz"
"http://ftp.leg.uct.ac.za/pub/packages/sage/src/sage-${version}.tar.gz"
"http://mirror.ufs.ac.za/sagemath/src/sage-${version}.tar.gz"
"http://mirrors-usa.go-parts.com/sage/sagemath/src/sage-${version}.tar.gz"
"http://www.cecm.sfu.ca/sage/src/sage-${version}.tar.gz"
"http://files.sagemath.org/src/sage-${version}.tar.gz"
"http://mirrors.xmission.com/sage/src/sage-${version}.tar.gz"
"http://sagemath.c3sl.ufpr.br/src/sage-${version}.tar.gz"
"http://linorg.usp.br/sage/src/sage-${version}.tar.gz"
"http://mirror.hust.edu.cn/sagemath/src/sage-${version}.tar.gz"
"http://ftp.iitm.ac.in/sage/src/sage-${version}.tar.gz"
"http://ftp.kaist.ac.kr/sage/src/sage-${version}.tar.gz"
"http://ftp.riken.jp/sagemath/src/sage-${version}.tar.gz"
"http://mirrors.tuna.tsinghua.edu.cn/sagemath/src/sage-${version}.tar.gz"
"http://mirrors.ustc.edu.cn/sagemath/src/sage-${version}.tar.gz"
"http://ftp.tsukuba.wide.ad.jp/software/sage/src/sage-${version}.tar.gz"
"http://ftp.yz.yamagata-u.ac.jp/pub/math/sage/src/sage-${version}.tar.gz"
"http://mirror.yandex.ru/mirrors/sage.math.washington.edu/src/sage-${version}.tar.gz"
"http://mirror.aarnet.edu.au/pub/sage/src/sage-${version}.tar.gz"
"http://sage.mirror.garr.it/mirrors/sage/src/sage-${version}.tar.gz"
"http://www.mirrorservice.org/sites/www.sagemath.org/src/sage-${version}.tar.gz"
"http://mirror.switch.ch/mirror/sagemath/src/sage-${version}.tar.gz"
"https://mirrors.up.pt/pub/sage/src/sage-${version}.tar.gz"
"http://www-ftp.lip6.fr/pub/math/sagemath/src/sage-${version}.tar.gz"
"http://ftp.ntua.gr/pub/sagemath/src/sage-${version}.tar.gz"
];
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sha256 = "1cpcs1mr0yii64s152xmxyd450bfzjb22jjj0zh9y3n6g9alzpyq";
Add expression for sage
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};
sage: 6.8 -> 8.0 This "un-breaks" sage while also updating it to 8.0. It compiles sage with its dependencies as one big pile, which is not the best approach but definately better than nothing for now. To be able to shrink the huge output pile a little, it also splits docs from the rest of the output.
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postPatch = ''
substituteAllInPlace src/bin/sage-env
sage: 8.0 -> 8.1, fix sandbox build The sandboxed build was failing, because it relied heavily on /usr/bin/env. This is fixed with a lot of shebang patching (both to system packages and to sage-internal packages).
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bash=${bash} substituteAllInPlace build/bin/sage-spkg
sage: 6.8 -> 8.0 This "un-breaks" sage while also updating it to 8.0. It compiles sage with its dependencies as one big pile, which is not the best approach but definately better than nothing for now. To be able to shrink the huge output pile a little, it also splits docs from the rest of the output.
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'';
sage: 6.1.1 -> 6.8
2015-09-18 14:56:05 +01:00
sage: 6.8 -> 8.0 This "un-breaks" sage while also updating it to 8.0. It compiles sage with its dependencies as one big pile, which is not the best approach but definately better than nothing for now. To be able to shrink the huge output pile a little, it also splits docs from the rest of the output.
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installPhase = ''
# Sage installs during first `make`, `make install` is no-op and just takes time.
'';
outputs = [ "out" "doc" ];
buildInputs = [
sage: 8.0 -> 8.1, fix sandbox build The sandboxed build was failing, because it relied heavily on /usr/bin/env. This is fixed with a lot of shebang patching (both to system packages and to sage-internal packages).
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bash # needed for the build
sage: 6.8 -> 8.0 This "un-breaks" sage while also updating it to 8.0. It compiles sage with its dependencies as one big pile, which is not the best approach but definately better than nothing for now. To be able to shrink the huge output pile a little, it also splits docs from the rest of the output.
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perl # needed for the build
python # needed for the build
sage: 8.0 -> 8.1, fix sandbox build The sandboxed build was failing, because it relied heavily on /usr/bin/env. This is fixed with a lot of shebang patching (both to system packages and to sage-internal packages).
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gfortran # needed to build giac, openblas
sage: 6.8 -> 8.0 This "un-breaks" sage while also updating it to 8.0. It compiles sage with its dependencies as one big pile, which is not the best approach but definately better than nothing for now. To be able to shrink the huge output pile a little, it also splits docs from the rest of the output.
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autoreconfHook # needed to configure sage with prefix
gettext # needed to build the singular spkg
hevea # needed to build the docs of the giac spkg
which # needed in configure of mpir
# needed to build the docs of the giac spkg
sage: 8.0 -> 8.1, fix sandbox build The sandboxed build was failing, because it relied heavily on /usr/bin/env. This is fixed with a lot of shebang patching (both to system packages and to sage-internal packages).
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texinfo # needed to build maxima
sage: 6.8 -> 8.0 This "un-breaks" sage while also updating it to 8.0. It compiles sage with its dependencies as one big pile, which is not the best approach but definately better than nothing for now. To be able to shrink the huge output pile a little, it also splits docs from the rest of the output.
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(texlive.combine { inherit (texlive)
scheme-basic
collection-pstricks # needed by giac
times # font needed by giac
stmaryrd # needed by giac
babel-greek # optional for giac, otherwise throws a bunch of latex command not founds
;
})
];
sage: 8.0 -> 8.1, fix sandbox build The sandboxed build was failing, because it relied heavily on /usr/bin/env. This is fixed with a lot of shebang patching (both to system packages and to sage-internal packages).
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nativeBuildInputs = [ gfortran perl which ];
sage: 6.8 -> 8.0 This "un-breaks" sage while also updating it to 8.0. It compiles sage with its dependencies as one big pile, which is not the best approach but definately better than nothing for now. To be able to shrink the huge output pile a little, it also splits docs from the rest of the output.
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patches = [
# fix usages of /bin/rm
./spkg-singular.patch
# help python find the crypt library
sage: 8.0 -> 8.1, fix sandbox build The sandboxed build was failing, because it relied heavily on /usr/bin/env. This is fixed with a lot of shebang patching (both to system packages and to sage-internal packages).
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# patches python3 and indirectly python2, since those installation files are symlinked
./spkg-python.patch
sage: 6.8 -> 8.0 This "un-breaks" sage while also updating it to 8.0. It compiles sage with its dependencies as one big pile, which is not the best approach but definately better than nothing for now. To be able to shrink the huge output pile a little, it also splits docs from the rest of the output.
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# fix usages of /usr/bin/perl
./spkg-git.patch
# fix usages of /bin/cp and add necessary argument to function call
./spkg-giac.patch
# environment
./env.patch
sage: 8.0 -> 8.1, fix sandbox build The sandboxed build was failing, because it relied heavily on /usr/bin/env. This is fixed with a lot of shebang patching (both to system packages and to sage-internal packages).
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# adjust wrapper shebang and patch shebangs after each spkg build
./shebangs.patch
sage: 6.8 -> 8.0 This "un-breaks" sage while also updating it to 8.0. It compiles sage with its dependencies as one big pile, which is not the best approach but definately better than nothing for now. To be able to shrink the huge output pile a little, it also splits docs from the rest of the output.
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];
Add expression for sage
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enableParallelBuilding = true;
sage: 6.8 -> 8.0 This "un-breaks" sage while also updating it to 8.0. It compiles sage with its dependencies as one big pile, which is not the best approach but definately better than nothing for now. To be able to shrink the huge output pile a little, it also splits docs from the rest of the output.
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hardeningDisable = [
"format" # needed to build palp, for lines like `printf(ctime(&_NFL->TIME))`
# TODO could be patched with `sed s|printf(ctime(\(.*\)))|%s... or fixed upstream
];
sage: fix build closes #17842
2016-08-29 13:46:51 +01:00
Add expression for sage
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preConfigure = ''
export SAGE_NUM_THREADS=$NIX_BUILD_CORES
sage: 6.1.1 -> 6.8
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export SAGE_ATLAS_ARCH=fast
sage: 6.8 -> 8.0 This "un-breaks" sage while also updating it to 8.0. It compiles sage with its dependencies as one big pile, which is not the best approach but definately better than nothing for now. To be able to shrink the huge output pile a little, it also splits docs from the rest of the output.
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export HOME=$out/sage-home
mkdir -p $out/sage-home
mkdir -p "$out"
# we need to keep the source around
dir="$PWD"
cd ..
mv "$dir" "$out/sage-root"
cd "$out/sage-root" # build in target dir, since `make` is also `make install`
'';
# for reference: http://doc.sagemath.org/html/en/installation/source.html
preBuild = ''
# TODO do this conditionally
export SAGE_SPKG_INSTALL_DOCS='no'
sage: 8.0 -> 8.1, fix sandbox build The sandboxed build was failing, because it relied heavily on /usr/bin/env. This is fixed with a lot of shebang patching (both to system packages and to sage-internal packages).
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# symlink python to make sure the shebangs are patched to the sage path
# while still being able to use python before building it
# (this is important because otherwise sage will try to install python
# packages globally later on)
ln -s "${python}/bin/python2" $out/bin/python2
ln -s "$out/bin/python2" $out/bin/python
touch $out/bin/python3
bash $patchSageShebangs .
sage: 6.8 -> 8.0 This "un-breaks" sage while also updating it to 8.0. It compiles sage with its dependencies as one big pile, which is not the best approach but definately better than nothing for now. To be able to shrink the huge output pile a little, it also splits docs from the rest of the output.
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'';
postBuild = ''
rm -r "$out/sage-root/upstream" # don't keep the sources of all the spkgs
rm -r "$out/sage-root/src/build"
rm -rf "$out/sage-root/src/.git"
rm -r "$out/sage-root/logs"
# Fix dependency cycle between out and doc
sage: 8.0 -> 8.1, fix sandbox build The sandboxed build was failing, because it relied heavily on /usr/bin/env. This is fixed with a lot of shebang patching (both to system packages and to sage-internal packages).
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rm -f "$out/sage-root/config.log"
sage: 6.8 -> 8.0 This "un-breaks" sage while also updating it to 8.0. It compiles sage with its dependencies as one big pile, which is not the best approach but definately better than nothing for now. To be able to shrink the huge output pile a little, it also splits docs from the rest of the output.
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rm -f "$out/sage-root/config.status"
rm -f "$out/sage-root/build/make/Makefile-auto"
rm -f "$out/sage-home/.sage/gap/libgap-workspace-"*
sage: 8.0 -> 8.1, fix sandbox build The sandboxed build was failing, because it relied heavily on /usr/bin/env. This is fixed with a lot of shebang patching (both to system packages and to sage-internal packages).
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# Make sure all shebangs are properly patched
bash $patchSageShebangs $out
Add expression for sage
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'';
sage: 6.8 -> 8.0 This "un-breaks" sage while also updating it to 8.0. It compiles sage with its dependencies as one big pile, which is not the best approach but definately better than nothing for now. To be able to shrink the huge output pile a little, it also splits docs from the rest of the output.
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# TODO there are some doctest failures, which seem harmless.
# We should figure out a way to fix the failures or ignore only those tests.
doCheck = false;
sage: fix TeX Live input The Sage derivation had texLive, the old TeX Live packaging which is now marked as broken, as a build input. This replaces it by the current TeX Live packaging. However, the build remains broken. One of the problems can be solved by patching the hashbangs at the beginning of build scripts, but the build still gets stuck while building ncurses.
2016-08-08 03:01:39 +01:00
sage: 6.8 -> 8.0 This "un-breaks" sage while also updating it to 8.0. It compiles sage with its dependencies as one big pile, which is not the best approach but definately better than nothing for now. To be able to shrink the huge output pile a little, it also splits docs from the rest of the output.
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checkTarget = "ptestalllong"; # all long tests in parallell
preCheck = ''
export SAGE_TIMEOUT=0 # no timeout
export SAGE_TIMEOUT_LONG=0 # no timeout
'';
sage: 6.1.1 -> 6.8
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Add expression for sage
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meta = {
pkgs: refactor needless quoting of homepage meta attribute (#27809) * pkgs: refactor needless quoting of homepage meta attribute A lot of packages are needlessly quoting the homepage meta attribute (about 1400, 22%), this commit refactors all of those instances. * pkgs: Fixing some links that were wrongfully unquoted in the previous commit * Fixed some instances
2017-08-01 21:03:30 +01:00
homepage = http://www.sagemath.org;
sage: fix meta information Correct homagepage, description, and license.
2014-11-02 19:55:02 +00:00
description = "A free open source mathematics software system";
sage: 6.8 -> 8.0 This "un-breaks" sage while also updating it to 8.0. It compiles sage with its dependencies as one big pile, which is not the best approach but definately better than nothing for now. To be able to shrink the huge output pile a little, it also splits docs from the rest of the output.
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# taken from the homepage
longDescription = ''
SageMath is a free open-source mathematics software system licensed under the GPL. It builds on top of many existing open-source packages: NumPy, SciPy, matplotlib, Sympy, Maxima, GAP, FLINT, R and many more. Access their combined power through a common, Python-based language or directly via interfaces or wrappers.
Mission: Creating a viable free open source alternative to Magma, Maple, Mathematica and Matlab.
'';
sage: fix meta information Correct homagepage, description, and license.
2014-11-02 19:55:02 +00:00
license = stdenv.lib.licenses.gpl2Plus;
Restrict platforms to what is known to work.
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platforms = stdenv.lib.platforms.linux;
sage: 6.8 -> 8.0 This "un-breaks" sage while also updating it to 8.0. It compiles sage with its dependencies as one big pile, which is not the best approach but definately better than nothing for now. To be able to shrink the huge output pile a little, it also splits docs from the rest of the output.
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maintainers = with stdenv.lib.maintainers; [ timokau ];
Add expression for sage
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};
}
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