2018-04-11 10:33:26 +01:00
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{ stdenv
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2018-07-12 21:31:52 +01:00
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, lib
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2018-04-11 10:33:26 +01:00
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, fetchurl
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, unzip
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2017-12-04 18:53:36 +00:00
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, makeDesktopItem
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2018-04-11 10:33:26 +01:00
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, jre
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}:
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2017-12-04 18:53:36 +00:00
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let
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desktopItem = makeDesktopItem {
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name = "jmol";
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exec = "jmol";
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desktopName = "JMol";
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genericName = "Molecular Modeler";
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mimeType = "chemical/x-pdb;chemical/x-mdl-molfile;chemical/x-mol2;chemical/seq-aa-fasta;chemical/seq-na-fasta;chemical/x-xyz;chemical/x-mdl-sdf;";
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categories = "Graphics;Education;Science;Chemistry;";
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};
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in
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2018-04-11 10:33:26 +01:00
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stdenv.mkDerivation rec {
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2020-11-28 06:51:19 +00:00
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version = "14.31.18";
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2018-04-11 10:33:26 +01:00
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pname = "jmol";
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2019-02-06 11:25:25 +00:00
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src = let
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2018-07-12 21:31:52 +01:00
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baseVersion = "${lib.versions.major version}.${lib.versions.minor version}";
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in fetchurl {
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2018-04-11 10:33:26 +01:00
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url = "mirror://sourceforge/jmol/Jmol/Version%20${baseVersion}/Jmol%20${version}/Jmol-${version}-binary.tar.gz";
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2020-11-28 06:51:19 +00:00
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sha256 = "0hkc7c08azbw3k91ygwz6r5y4yw6k8l7h4gcq5p71knd5k1fa5jd";
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2018-04-11 10:33:26 +01:00
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};
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2017-12-04 18:53:36 +00:00
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patchPhase = ''
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sed -i -e "4s:.*:command=${jre}/bin/java:" -e "10s:.*:jarpath=$out/share/jmol/Jmol.jar:" -e "11,21d" jmol
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'';
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2018-04-11 10:33:26 +01:00
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installPhase = ''
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2017-12-04 18:53:36 +00:00
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mkdir -p "$out/share/jmol" "$out/bin"
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2018-04-11 10:33:26 +01:00
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${unzip}/bin/unzip jsmol.zip -d "$out/share/"
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cp *.jar jmol.sh "$out/share/jmol"
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2017-12-04 18:53:36 +00:00
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cp -r ${desktopItem}/share/applications $out/share
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cp jmol $out/bin
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2018-04-11 10:33:26 +01:00
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'';
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enableParallelBuilding = true;
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2021-01-11 07:54:33 +00:00
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meta = with lib; {
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2018-04-11 10:33:26 +01:00
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description = "A Java 3D viewer for chemical structures";
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2020-04-01 02:11:51 +01:00
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homepage = "https://sourceforge.net/projects/jmol";
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2018-04-11 10:33:26 +01:00
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license = licenses.lgpl2;
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platforms = platforms.all;
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2020-11-17 19:41:33 +00:00
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maintainers = with maintainers; [ mounium ] ++ teams.sage.members;
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2018-04-11 10:33:26 +01:00
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};
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}
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