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nixpkgs/pkgs/development/python-modules/mahotas/disable-impure-tests.patch

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pythonPackages.mahotas: fix build, move expression See https://hydra.nixos.org/build/80828287 Moves `mahotas` out of `python-packages.nix` into its own file and fixes broken test cases by skipping them using nosetest's `@nottest` annotation. These tests broke from time to time in a sandbox and are therefore considered impure. Addresses #45960
2018-09-08 15:08:52 +01:00
diff --git a/mahotas/tests/test_colors.py b/mahotas/tests/test_colors.py
index 8a8183b..0d34c9f 100644
--- a/mahotas/tests/test_colors.py
+++ b/mahotas/tests/test_colors.py
@@ -2,7 +2,9 @@ import mahotas
import numpy as np
from mahotas.tests.utils import luispedro_jpg
from mahotas.colors import rgb2xyz, rgb2lab, xyz2rgb, rgb2grey, rgb2sepia
+from nose.tools import nottest
+@nottest
def test_colors():
f = luispedro_jpg()
lab = rgb2lab(f)
diff --git a/mahotas/tests/test_features_shape.py b/mahotas/tests/test_features_shape.py
index 462f467..2381793 100644
--- a/mahotas/tests/test_features_shape.py
+++ b/mahotas/tests/test_features_shape.py
@@ -2,6 +2,7 @@ import mahotas.features.shape
import numpy as np
import mahotas as mh
from mahotas.features.shape import roundness, eccentricity
+from nose.tools import nottest
def test_eccentricity():
D = mh.disk(32, 2)
@@ -29,6 +30,7 @@ def test_zeros():
I[8:4:12] = 1
assert eccentricity(I) == 0
+@nottest
def test_ellipse_axes():
Y,X = np.mgrid[:1024,:1024]
Y = Y/1024.
pythonPackages.mahotas: skip `test_moments.test_normalize` and `test_texture.test_haralick3d` testcase (#46793) As stated in #46368, this package seems to have issues with impure tests (reported in https://github.com/luispedro/mahotas/issues/97). Unfortunately the `release-18.09` job on Hydra fails at the attempt to build this package since `test_moments.test_normalize1` and `test_texture.test_haralick3d` breaks. Until the root cause is identified, we skip the disabled tests to ensure that the resulting package is not entirely broken (which can't be confirmed with `doCheck = false`). See https://hydra.nixos.org/job/nixos/release-18.09/nixpkgs.python27Packages.mahotas.x86_64-linux See https://hydra.nixos.org/job/nixos/release-18.09/nixpkgs.python36Packages.mahotas.x86_64-linux See https://logs.nix.ci/?key=nixos/nixpkgs.46793&attempt_id=b85a638d-dcb0-41d3-ab2a-9616a3bb0175 /cc @xeji @luispedro
2018-09-17 20:33:47 +01:00
diff --git a/mahotas/tests/test_moments.py b/mahotas/tests/test_moments.py
index 686c7c3..ba3487b 100644
--- a/mahotas/tests/test_moments.py
+++ b/mahotas/tests/test_moments.py
@@ -1,6 +1,7 @@
import numpy as np
import mahotas as mh
from mahotas.features.moments import moments
+from nose.tools import nottest
def _slow(A, p0, p1, cm):
c0,c1 = cm
@@ -28,7 +29,7 @@ def test_against_slow():
yield perform, 1, 2, (0, 0), A
yield perform, 1, 0, (0, 0), A
-
+@nottest
def test_normalize():
A,B = np.meshgrid(np.arange(128),np.arange(128))
for p0,p1 in [(1,1), (1,2), (2,1), (2,2)]:
diff --git a/mahotas/tests/test_texture.py b/mahotas/tests/test_texture.py
index 7e101ba..af1305d 100644
--- a/mahotas/tests/test_texture.py
+++ b/mahotas/tests/test_texture.py
@@ -2,7 +2,7 @@ import numpy as np
from mahotas.features import texture
import mahotas as mh
import mahotas.features._texture
-from nose.tools import raises
+from nose.tools import raises, nottest
def test__cooccurence():
cooccurence = mahotas.features._texture.cooccurence
@@ -149,6 +149,7 @@ def test_float_haralick():
A[2,2]=12
texture.haralick(A)
+@nottest
def test_haralick3d():
np.random.seed(22)
img = mahotas.stretch(255*np.random.rand(20,20,4))
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