2019-01-10 23:28:28 +00:00
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{ stdenv, lib, makeWrapper, fetchzip, jre }:
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stdenv.mkDerivation rec {
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2019-08-15 13:41:18 +01:00
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pname = "bftools";
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2019-01-10 23:28:28 +00:00
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version = "5.9.2";
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src = fetchzip {
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url = "http://downloads.openmicroscopy.org/bio-formats/${version}/artifacts/bftools.zip";
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sha256 = "08lmbg3kfxh17q6548il0i2h3f9a6ch8r0r067p14dajhzfpjyqj";
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};
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installPhase = ''
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find . -maxdepth 1 -perm -111 -type f -not -name "*.sh" \
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-exec install -vD {} "$out"/bin/{} \;
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mkdir $out/libexec
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mkdir -p $out/share/java
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cp ./*.sh $out/libexec
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cp ./*.jar $out/share/java
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for file in $out/bin/*; do
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substituteInPlace $file --replace "\$BF_DIR" $out/libexec
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done
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substituteInPlace $out/libexec/bf.sh --replace "\$BF_JAR_DIR" $out/share/java
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'';
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postFixup = ''
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wrapProgram $out/libexec/bf.sh --prefix PATH : "${lib.makeBinPath [ jre ]}"
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'';
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nativeBuildInputs = [ makeWrapper ];
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meta = with stdenv.lib; {
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description = "A bundle of scripts for using Bio-Formats on the command line with bioformats_package.jar already included";
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license = licenses.gpl2;
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platforms = platforms.all;
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homepage = https://www.openmicroscopy.org/bio-formats/;
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maintainers = [ maintainers.tbenst ];
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};
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}
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