2017-03-07 05:33:04 +00:00
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{stdenv, fetchurl, jre, unzip, makeWrapper}:
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stdenv.mkDerivation rec {
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name = "snpeff-${version}";
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2018-03-12 05:03:44 +00:00
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version = "4.3q";
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2017-03-07 05:33:04 +00:00
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src = fetchurl {
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2018-03-12 05:03:44 +00:00
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url = "mirror://sourceforge/project/snpeff/snpEff_v4_3q_core.zip";
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sha256 = "0sxz8zy8wrzcy01hyb1cirwbxqyjw30a2x3q6p4l7zmw2szi7mn1";
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2017-03-07 05:33:04 +00:00
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};
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buildInputs = [ unzip jre makeWrapper ];
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2017-06-13 06:29:14 +01:00
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sourceRoot = "snpEff";
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2017-03-07 05:33:04 +00:00
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installPhase = ''
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mkdir -p $out/libexec/snpeff
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cp *.jar *.config $out/libexec/snpeff
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mkdir -p $out/bin
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makeWrapper ${jre}/bin/java $out/bin/snpeff --add-flags "-jar $out/libexec/snpeff/snpEff.jar"
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makeWrapper ${jre}/bin/java $out/bin/snpsift --add-flags "-jar $out/libexec/snpeff/SnpSift.jar"
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'';
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meta = with stdenv.lib; {
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description = "Genetic variant annotation and effect prediction toolbox.";
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license = licenses.lgpl3;
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homepage = http://snpeff.sourceforge.net/;
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maintainers = with maintainers; [ jbedo ];
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platforms = platforms.all;
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};
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}
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